1. The relationship between the minor allele content and Alzheimer's disease.
- Author
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Chen, Hongyao, Lei, Xiaoyun, Yuan, Dejian, and Huang, Shi
- Subjects
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ALZHEIMER'S disease , *ALLELES , *GENE expression , *SINGLE nucleotide polymorphisms , *NEURODEGENERATION - Abstract
Alzheimer's disease (AD) is a chronic neurodegenerative disease. The genetic risk factors of AD remain better understood. Using previously published dataset of common single nucleotide polymorphisms (SNPs), we studied the association between the minor allele content (MAC) in an individual and AD. We found that AD patients have higher average MAC values than matched controls. We identified a risk prediction model that could predict 2.19% of AD cases. We also identified 49 genes whose expression levels correlated with both MAC and AD. By pathway and process enrichment analyses, these genes were found in pathways or processes closely related to AD. Our study suggests that AD may be linked with too many genetic variations over a threshold. The method of correlations with both MAC and traits appears to be effective in high efficiency identification of target genes for complex traits. • The relationship between the minor allele content (MAC) and Alzheimer's disease was studied at the genome-wide level. • AD patients have higher average MAC values than matched controls in two independent datasets. • An optimal MA set has been obtained that can be used to predict 2.19% of AD cases. • A set of 49 target genes were identified using correlation of gene expression with both MAC and phenotypes. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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