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1. Influence of sample variance on the phylogenetic reconstruction of protein sequences

Author

Ivo Provaznik, Helena Skutkova, and René Kizek

Subjects
Phylogenetic tree, business.industry, Phylogenetics, Quantitative Biology::Populations and Evolution, Pattern recognition, Sample variance, Artificial intelligence, business, Neighbor joining, Phylogenetic reconstruction, Mathematics
Abstract

This study deals with the influence of sample variance of evolutionary distance estimation on phylogeny reconstruction of protein sequences. We modified the currently used methods by more precise calculation of the sample variance depending on the type of sequences and the used evolutionary model to eliminate this influence.

Published
2011
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