1. Simulating flow of DNA suspension using dissipative particle dynamics
- Author
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Xi-Jun Fan, Xuhong Wu, Nhan Phan-Thien, Teng Yong Ng, and Shuo Chen
- Subjects
Fluid Flow and Transfer Processes ,Physics ,Quantitative Biology::Biomolecules ,Microchannel ,Computer simulation ,Mechanical Engineering ,Schmidt number ,Microfluidics ,Dissipative particle dynamics ,Computational Mechanics ,Dissipation ,Condensed Matter Physics ,Open-channel flow ,Physics::Fluid Dynamics ,Condensed Matter::Soft Condensed Matter ,Mechanics of Materials ,Statistical physics ,Suspension (vehicle) - Abstract
We simulate DNA suspension microchannel flows using the dissipative particle dynamics (DPD) method. Two developments make this simulation more realistic. One is to improve the dynamic characteristics of a DPD system by modifying the weighting function of the dissipative force and increasing its cutoff radius, so that the Schmidt number can be increased to a practical level. Another is to set up a wormlike chain model in the DPD framework, according to the measured extension properties of a DNA molecule in uniform flows. This chain model is then used to study flows of a DNA suspension through microchannels. Interesting results on the conformation evolution of DNA molecules passing through the microchannels, including periodic contraction-diffusion microchannels, are reported.
- Published
- 2006
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