1. Genome-wide Profiling of Genetic Synthetic Lethality Identifies CDK12 as a Novel Determinant of PARP1/2 Inhibitor Sensitivity
- Author
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Kerry Fenwick, Iwanka Kozarewa, James Campbell, Alan Ashworth, I. Bajrami, Asha Konde, J. Frankum, Farah L. Rehman, David Sims, Rachel Brough, Christopher J. Lord, Rowan E. Miller, R. Rafiq, Rachael Natrajan, Sean D. Hooper, Lina Chen, and Ioannis Assiotis
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Cancer Research ,endocrine system diseases ,Nude ,Poly (ADP-Ribose) Polymerase-1 ,Synthetic lethality ,Piperazines ,chemistry.chemical_compound ,Mice ,Random Allocation ,0302 clinical medicine ,PARP1 ,RNA, Small Interfering ,Enzyme Inhibitors ,Cancer ,Genetics ,Ovarian Neoplasms ,0303 health sciences ,Genome ,Immunohistochemistry ,Cyclin-Dependent Kinases ,3. Good health ,Ovarian Cancer ,Replication fork arrest ,Oncology ,5.1 Pharmaceuticals ,030220 oncology & carcinogenesis ,Female ,Poly(ADP-ribose) Polymerases ,Development of treatments and therapeutic interventions ,Human ,DNA repair ,Oncology and Carcinogenesis ,Cystadenocarcinoma ,Mice, Nude ,Biology ,Poly(ADP-ribose) Polymerase Inhibitors ,Small Interfering ,Article ,Olaparib ,03 medical and health sciences ,Rare Diseases ,Breast Cancer ,Animals ,Humans ,Oncology & Carcinogenesis ,Gene ,Germ-Line Mutation ,030304 developmental biology ,Genome, Human ,Gene Expression Profiling ,Human Genome ,Serous ,Survival Analysis ,Xenograft Model Antitumor Assays ,Cystadenocarcinoma, Serous ,Gene expression profiling ,Orphan Drug ,Good Health and Well Being ,chemistry ,Phthalazines ,RNA ,Homologous recombination ,Genome-Wide Association Study - Abstract
Small-molecule inhibitors of PARP1/2, such as olaparib, have been proposed to serve as a synthetic lethal therapy for cancers that harbor BRCA1 or BRCA2 mutations. Indeed, in clinical trials, PARP1/2 inhibitors elicit sustained antitumor responses in patients with germline BRCA gene mutations. In hypothesizing that additional genetic determinants might direct use of these drugs, we conducted a genome-wide synthetic lethal screen for candidate olaparib sensitivity genes. In support of this hypothesis, the set of identified genes included known determinants of olaparib sensitivity, such as BRCA1, RAD51, and Fanconi's anemia susceptibility genes. In addition, the set included genes implicated in established networks of DNA repair, DNA cohesion, and chromatin remodeling, none of which were known previously to confer sensitivity to PARP1/2 inhibition. Notably, integration of the list of candidate sensitivity genes with data from tumor DNA sequencing studies identified CDK12 deficiency as a clinically relevant biomarker of PARP1/2 inhibitor sensitivity. In models of high-grade serous ovarian cancer (HGS-OVCa), CDK12 attenuation was sufficient to confer sensitivity to PARP1/2 inhibition, suppression of DNA repair via homologous recombination, and reduced expression of BRCA1. As one of only nine genes known to be significantly mutated in HGS-OVCa, CDK12 has properties that should confirm interest in its use as a biomarker, particularly in ongoing clinical trials of PARP1/2 inhibitors and other agents that trigger replication fork arrest. Cancer Res; 74(1); 287–97. ©2013 AACR.
- Published
- 2014
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