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Thiswork describes the combined use of synchrotron X-ray diffraction anddensity functional theory (DFT) calculations to understand the cocrystalformation or phase separation in 2D monolayers capable of halogenbonding. The solid monolayer structure of 1,4-diiodobenzene (DIB)has been determined by X-ray synchrotron diffraction. The mixing behaviorof DIB with 4,4′-bipyridyl (BPY) has also been studied andinterestingly is found to phase-separate rather than form a cocrystal,as observed in the bulk. DFT calculations are used to establish theunderlying origin of this interesting behavior. The DFT calculationsare demonstrated to agree well with the recently proposed monolayerstructure for the cocrystal of BPY and 1,4-diiodotetrafluorobenzene(DITFB) (the perfluorinated analogue of DIB), where halogen bondinghas also been identified by diffraction. Here we have calculated anestimate of the halogen bond strength by DFT calculations for theDITFB/BPY cocrystal monolayer, which is found to be ∼20 kJ/mol.Computationally, we find that the nonfluorinated DIB and BPY are notexpected to form a halogen-bonded cocrystal in a 2D layer; for thispair of species, phase separation of the components is calculatedto be lower energy, in good agreement with the diffraction results. [ABSTRACT FROM AUTHOR]

This work presents an experimental picture of molecular ballistic diffusion on a surface, a process that is difficult to pinpoint because it generally occurs on very short length scales. By combining neutron time-of-flight data with molecular dynamics simulations and density functional theory calculations, we provide a complete description of the ballistic translations and rotations of a polyaromatic hydrocarbon (PAH) adsorbed on the basal plane of graphite. Pyrene, C 16 H 10 , adsorbed on graphite is a unique system, where at relative surface coverages of about 10-20% its mean free path matches the experimentally accessible time/space scale of neutron time-of-flight spectroscopy (IN6 at the Institut Laue-Langevin). The comparison between the diffusive behavior of large and small PAHs such as pyrene and benzene adsorbed on graphite brings a strong experimental indication that the interaction between molecules is the dominating mechanism in the surface diffusion of polyaromatic hydrocarbons adsorbed on graphite.

Mass transport at a surface is a key factor in heterogeneous catalysis. The rate is determined by excitation across a translational barrier and depends on the energy landscape and the coupling to the thermal bath of the surface. Here we use helium spin-echo spectroscopy to track the microscopic motion of benzene adsorbed on Cu(001) at low coverage (θ ∼ 0.07 ML). Specifically, our combined experimental and computational data determine both the absolute rate and mechanism of the molecular motion. The observed rate is significantly higher by a factor of 3.0 ± 0.1 than is possible in a conventional, point-particle model and can be understood only by including additional molecular (rotational) coordinates. We argue that the effect can be described as an entropic contribution that enhances the population of molecules in the transition state. The process is generally relevant to molecular systems and illustrates the importance of the pre-exponential factor alongside the activation barrier in studies of surface kinetics.

The motion of adsorbate molecules across surfaces is fundamental to self-assembly, material growth, and heterogeneous catalysis. Recent Scanning Tunneling Microscopy studies have demonstrated the electron-induced long-range surface-migration of ethylene, benzene, and related molecules, moving tens of Angstroms across Si(100). We present a model of the previously unexplained long-range recoil of chemisorbed ethylene across the surface of silicon. The molecular dynamics reveal two key elements for directed long-range migration: first 'ballistic' motion that causes the molecule to leave the ab initio slab of the surface traveling 3-8 Å above it out of range of its roughness, and thereafter skipping-stone 'bounces' that transport it further to the observed long distances. Using a previously tested Impulsive Two-State model, we predict comparable long-range recoil of atomic chlorine following electron-induced dissociation of chlorophenyl chemisorbed at Cu(110).

Self-assembled monolayers of sulfur-containing heterocycles and linear oligomers containing thiophene groups have been widely employed in organic electronic applications. Here, we investigate the dynamics of isolated thiophene molecules on Cu(111) by combining helium spin-echo (HeSE) spectroscopy with density functional theory calculations. We show that the thiophene/Cu(111) system displays a rich array of aperiodic dynamical phenomena that include jump diffusion between adjacent atop sites over a 59-62 meV barrier and activated rotation around a sulfur-copper anchor, two processes that have been observed previously for related systems. In addition, we present experimental evidence for a new, weakly activated process, the flapping of the molecular ring. Repulsive inter-adsorbate interactions and an exceptionally high friction coefficient of 5 ± 2 ps(-1) are also observed. These experiments demonstrate the versatility of the HeSE technique, and the quantitative information extracted in a detailed analysis provides an ideal benchmark for state-of-the-art theoretical techniques including nonlocal adsorbate-substrate interactions.