1. Genetically Encoded Sensor Enables Endogenous RNA Imaging with Conformation-Switching Induced Fluorogenic Proteins
- Author
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Xia Chu, Wen-Jing Zhou, Fenglin Wang, Hua Li, Ke-Ke Zhang, and Jian-Hui Jiang
- Subjects
Protein Conformation ,Survivin ,Green Fluorescent Proteins ,Cell ,Endogeny ,Biochemistry ,Catalysis ,Colloid and Surface Chemistry ,Cell Line, Tumor ,medicine ,Humans ,Fluorescent protein ,RNA, Messenger ,Mitosis ,Sensor system ,Messenger RNA ,Chemistry ,Optical Imaging ,Nucleic Acid Hybridization ,RNA ,General Chemistry ,Aptamers, Nucleotide ,Cell biology ,medicine.anatomical_structure ,RNA, Long Noncoding - Abstract
Genetically encoded molecular tools are crucial for live cell RNA imaging, and few are available for endogenous RNA imaging. We develop a new genetically encoded sensor using conformation switching RNA induced fluorogenic proteins that enable multicolor and signal-amplified imaging of endogenous RNAs. The sensor system is designed with an RNA sensing module and a degron-fused fluorescent protein reporter. Target RNA induces conformation switching of the RNA sensing module to form RNA aptamers that stabilize the degron-fused protein for fluorogenic imaging. This sensor is demonstrated for high-contrast imaging of survivin mRNA abundance and dynamics in live cells. Moreover, the sensor system is extended to a multicolor palette by screening fluorogenic proteins of distinct colors, and engineered into a signal amplifier using the split fluorescent protein design. The sensor is further exploited for imaging lncRNA MALAT-1 and its translocation dynamics during mitosis. Our sensor system can afford a valuable platform for RNA imaging in biomedical research and clinical theranostics.
- Published
- 2021
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