1. Profiling the circulating miRNAs in mice exposed to gram-positive and gram-negative bacteria by Illumina small RNA deep sequencing
- Author
-
Tsu-Hsiang Lu, Chia-Jung Wu, Ching-Hua Hsieh, Johnson Chia-Shen Yang, Yi-Chun Chen, Siou-Ling Tzeng, Yi-Chan Wu, Shao-Chun Wu, and Cheng-Shyuan Rau
- Subjects
Male ,Small RNA ,Staphylococcus aureus ,Gram-negative bacteria ,Endocrinology, Diabetes and Metabolism ,Gram-positive bacteria ,Clinical Biochemistry ,Biology ,medicine.disease_cause ,Staphylococcal infections ,Deep sequencing ,Mice ,medicine ,Escherichia coli ,Animals ,Pharmacology (medical) ,Molecular Biology ,Pathogen ,Escherichia coli Infections ,Biochemistry, medical ,microRNAs (miRNAs) ,Research ,Gene Expression Profiling ,Biochemistry (medical) ,High-Throughput Nucleotide Sequencing ,Cell Biology ,General Medicine ,Staphylococcal Infections ,biology.organism_classification ,medicine.disease ,Molecular biology ,Small RNA deep sequencing ,Mice, Inbred C57BL ,MicroRNAs ,Circulating microRNAs ,Bacteria - Abstract
Background We profiled the expression of circulating microRNAs (miRNAs) in mice using Illumina small RNA deep sequencing in order to identify the miRNAs that may potentially be used as biomarkers to distinguish between gram-negative and gram-positive bacterial infections. Results Recombinant-specific gram-negative pathogen Escherichia coli (Xen14) and gram-positive pathogen Staphylococcus aureus (Xen29) were used to induce bacterial infection in mice at a concentration of 1 × 108 bacteria/100 μL of phosphate buffered saline (PBS). Small RNA libraries generated from the serum of mice after exposure to PBS, Xen14, Xen29, and Xen14 + Xen29 via the routes of subcutaneous injection (I), cut wound (C), or under grafted skin (S) were analyzed using an Illumina HiSeq2000 Sequencer. Following exposure to gram-negative bacteria alone, no differentially expressed miRNA was found in the injection, cut, or skin graft models. Exposure to mixed bacteria induced a similar expression pattern of the circulating miRNAs to that induced by gram-positive bacterial infection. Upon gram-positive bacterial infection, 9 miRNAs (mir-193b-3p, mir-133a-1-3p, mir-133a-2-3p, mir-133a-1-5p, mir-133b-3p, mir-434-3p, mir-127-3p, mir-676-3p, mir-215-5p) showed upregulation greater than 4-fold with a p-value
- Published
- 2015