1. Patterns in the longitudinal oropharyngeal microbiome evolution related to ventilator-associated pneumonia.
- Author
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Sommerstein R, Merz TM, Berger S, Kraemer JG, Marschall J, and Hilty M
- Subjects
- Adolescent, Adult, Aged, Case-Control Studies, Enterobacteriaceae classification, Enterobacteriaceae isolation & purification, Enterobacteriaceae Infections microbiology, Female, Haemophilus influenzae classification, Haemophilus influenzae isolation & purification, High-Throughput Nucleotide Sequencing, Humans, Longitudinal Studies, Male, Middle Aged, Prospective Studies, RNA, Ribosomal, 16S genetics, Respiration, Artificial adverse effects, Young Adult, Intensive Care Units, Microbiota, Oropharynx microbiology, Pneumonia, Ventilator-Associated microbiology, Trachea microbiology
- Abstract
Background: The aim of the study was to evaluate the composition and the temporal evolution of the oropharyngeal microbiome in antibiotic-naïve patients requiring mechanical ventilation and to gain new insights into the pathogenesis of ventilator-associated pneumonia (VAP)., Methods: Prospective, observational single-center nested case-control study. Patients with acute critical illness and anticipated duration of mechanical ventilation > 4 days were eligible. We took oropharyngeal swabs (and if available, tracheal secretions) daily, starting at the day of intubation. The microbiota was characterized by 16S rRNA high-throughput sequencing and compared between patients developing VAP versus controls., Results: Five patients developed VAP. In three patient the causative pathogens were Enterobacteriaceae and in two Haemophilus influenzae . Locally weighted polynomial regression suggested that the within diversity (=alpha) was lower in Enterobacteriaceae VAP patients between days two to five of mechanical ventilation when compared to controls. Detection of Enterobacteriaceae in the oropharynx occurred on day two of follow-up and consisted of a single operational taxonomic unit in 2/3 patients with enterobacterial VAP., Conclusions: In acutely-ill patients who developed enterobacterial VAP the causative pathogen gained access to the oropharynx early after starting mechanical ventilation and outgrew the commensal members of the microbiome. Whether a specific pattern of the oropharyngeal microbiome between days three to five of mechanical ventilation may predict VAP enterobacterial VAP has to be evaluated in further studies., Competing Interests: Competing interestsThe authors declare that they have no competing interests.
- Published
- 2019
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