1. A blinded international study on the reliability of genetic testing for GGGGCC-repeat expansions in C9orf72 reveals marked differences in results among 14 laboratories
- Author
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Akimoto, C, Volk, AE, van Blitterswijk, M, Van den Broeck, M, Leblond, CS, Lumbroso, S, Camu, W, Neitzel, B, Onodera, O, van Rheenen, W, Pinto, S, Weber, M, Smith, B, Proven, M, Talbot, K, Keagle, P, Chesi, A, Ratti, A, van der Zee, J, Alstermark, H, Birve, A, Calini, D, Nordin, A, Tradowsky, DC, Just, W, Daoud, H, Angerbauer, S, DeJesus-Hernandez, M, Konno, T, Lloyd-Jani, A, de Carvalho, M, Mouzat, K, Landers, JE, Veldink, JH, Silani, V, Gitler, AD, Shaw, CE, Rouleau, GA, van den Berg, LH, Van Broeckhoven, C, Rademakers, R, Andersen, PM, Kubisch, C, and Repositório da Universidade de Lisboa
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Male ,medicine.medical_specialty ,C9orf72 ,Internal medicine ,Genotype ,Motor neurone disease ,Methods ,Genetics ,medicine ,Humans ,In patient ,Genetic Testing ,Molecular genetics ,Genotyping ,Genetics (clinical) ,Reliability (statistics) ,Genetic testing ,Southern blot ,C9orf72 Protein ,medicine.diagnostic_test ,business.industry ,Amyotrophic Lateral Sclerosis ,Proteins ,Reproducibility of Results ,Gold standard (test) ,Clinical Laboratory Services ,Neurology ,Frontotemporal Dementia ,Female ,Human medicine ,business - Abstract
Copyright © 2014, BMJ Publishing Group Ltd. All rights reserved. This is an Open Access article distributed in accordance with the Creative Commons Attribution Non Commercial (CC BY-NC 3.0) license, which permits others to distribute, remix, adapt, build upon this work non-commercially, and license their derivative works on different terms, provided the original work is properly cited and the use is non-commercial. See: http://creativecommons.org/licenses/by-nc/3.0/, Background: The GGGGCC-repeat expansion in C9orf72 is the most frequent mutation found in patients with amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD). Most of the studies on C9orf72 have relied on repeat-primed PCR (RP-PCR) methods for detection of the expansions. To investigate the inherent limitations of this technique, we compared methods and results of 14 laboratories. Methods: The 14 laboratories genotyped DNA from 78 individuals (diagnosed with ALS or FTD) in a blinded fashion. Eleven laboratories used a combination of amplicon-length analysis and RP-PCR, whereas three laboratories used RP-PCR alone; Southern blotting techniques were used as a reference. Results: Using PCR-based techniques, 5 of the 14 laboratories got results in full accordance with the Southern blotting results. Only 50 of the 78 DNA samples got the same genotype result in all 14 laboratories. There was a high degree of false positive and false negative results, and at least one sample could not be genotyped at all in 9 of the 14 laboratories. The mean sensitivity of a combination of amplicon-length analysis and RP-PCR was 95.0% (73.9-100%), and the mean specificity was 98.0% (87.5-100%). Overall, a sensitivity and specificity of more than 95% was observed in only seven laboratories. Conclusions: Because of the wide range seen in genotyping results, we recommend using a combination of amplicon-length analysis and RP-PCR as a minimum in a research setting. We propose that Southern blotting techniques should be the gold standard, and be made obligatory in a clinical diagnostic setting., This project was funded by the Swedish Science Council, the Brain Research Foundation, Mr B Hållsten's Brain Research Foundation, The Ulla-Carin Lindquist's Fundation for ALS Research, the Knut and Alice Wallenberg Foundation, Swedish Brain Power, the European Community's Health Seventh Framework Programme (FP7/2007–2013) (grant agreement no. 259867), The Belgian Science Policy Office Interuniversity Attraction Poles (IAP) programme, the Flemish Government supported Europe Initiative on Centers of Excellence in Neurodegeneration (CoEN), the Flemish Government initiated Methusalem excellence research programme, Alzheimer Research Foundation, the Medical Foundation Queen Elisabeth, the Research Foundation Flanders (FWO) and the FWO provided a postdoctoral scientist fellowship to JvdZ, University of Antwerp Research Fund, the Swiss ALS Foundation, the Italian Ministry of Health (RF-2009-1473856), Grant-in-Aid for the Research Committee of CNS Degenerative Diseases and Comprehensive Research on Disability Health and Welfare from the Ministry of Health, Labour and Welfare in Japan and Dr Van Blitterswijk is supported by the Milton Safenowitz Post-Doctoral Fellowship for ALS research from the ALS Association.
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- 2014