1. Microsatellite marker development in the crop wild relative Linum bienne using genome skimming
- Author
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Beatrice Landoni, F. Xavier Picó, Rocío Pérez-Barrales, Robin G. Allaby, Rocio Gómez, Adrian C. Brennan, and Juan Viruel
- Subjects
0106 biological sciences ,0301 basic medicine ,Population ,Population genetics ,Locus (genetics) ,Plant Science ,Biology ,010603 evolutionary biology ,01 natural sciences ,Genome ,Linum bienne ,03 medical and health sciences ,simple sequence repeat (SSR) ,Primer Notes ,lcsh:Botany ,education ,lcsh:QH301-705.5 ,Genotyping ,Ecology, Evolution, Behavior and Systematics ,Genetics ,Genetic diversity ,education.field_of_study ,Simple sequence repeat (SSR). [Population genetics] ,QH ,QK ,crop wild relative ,population genetics ,pale flax ,Primer Note ,biology.organism_classification ,Linaceae ,lcsh:QK1-989 ,030104 developmental biology ,lcsh:Biology (General) ,Crop wild relatives ,Microsatellite ,Population genetics: Simple sequence repeat (SSR) ,Pale flax - Abstract
Nuclear microsatellite markers were developed for Linum bienne , the sister species of the crop L. usitatissimum , to provide molecular genetic tools for the investigation of L. bienne genetic diversity and structure.\ud \ud Methods and Results\ud Fifty microsatellite loci were identified in L. bienne by means of genome skimming, and 44 loci successfully amplified. Of these, 16 loci evenly spread across the L. usitatissimum reference nuclear genome were used for genotyping six L. bienne populations. Excluding one monomorphic locus, the number of alleles per locus ranged from two to 12. Four out of six populations harbored private alleles. The levels of expected and observed heterozygosity were 0.076 to 0.667 and 0.000 to 1.000, respectively. All 16 loci successfully cross‐amplified in L. usitatissimum .\ud \ud Conclusions\ud The 16 microsatellite loci developed here can be used for population genetic studies in L. bienne , and 28 additional loci that successfully amplified are available for further testing.
- Published
- 2020