1. An Intracellular Allosteric Modulator Binding Pocket in SK2 Ion Channels Is Shared by Multiple Chemotypes.
- Author
-
Cho LT, Alexandrou AJ, Torella R, Knafels J, Hobbs J, Taylor T, Loucif A, Konopacka A, Bell S, Stevens EB, Pandit J, Horst R, Withka JM, Pryde DC, Liu S, and Young GT
- Subjects
- Allosteric Regulation, Amino Acid Motifs, Anticonvulsants chemistry, Anticonvulsants metabolism, Binding Sites, Calmodulin genetics, Calmodulin metabolism, Cloning, Molecular, Crystallography, X-Ray, Escherichia coli genetics, Escherichia coli metabolism, Gene Expression, Genetic Vectors chemistry, Genetic Vectors metabolism, HEK293 Cells, Humans, Indoles metabolism, Models, Molecular, Oximes metabolism, Protein Binding, Protein Conformation, alpha-Helical, Protein Interaction Domains and Motifs, Pyrazoles metabolism, Pyrimidines metabolism, Recombinant Proteins chemistry, Recombinant Proteins genetics, Recombinant Proteins metabolism, Riluzole metabolism, Small-Conductance Calcium-Activated Potassium Channels genetics, Small-Conductance Calcium-Activated Potassium Channels metabolism, Calmodulin chemistry, Indoles chemistry, Oximes chemistry, Pyrazoles chemistry, Pyrimidines chemistry, Riluzole chemistry, Small-Conductance Calcium-Activated Potassium Channels chemistry
- Abstract
Small conductance potassium (SK) ion channels define neuronal firing rates by conducting the after-hyperpolarization current. They are key targets in developing therapies where neuronal firing rates are dysfunctional, such as in epilepsy, Parkinson's, and amyotrophic lateral sclerosis (ALS). Here, we characterize a binding pocket situated at the intracellular interface of SK2 and calmodulin, which we show to be shared by multiple small-molecule chemotypes. Crystallization of this complex revealed that riluzole (approved for ALS) and an analog of the anti-ataxic agent (4-chloro-phenyl)-[2-(3,5-dimethyl-pyrazol-1-yl)-pyrimidin-4-yl]-amine (CyPPA) bind to and allosterically modulate via this site. Solution-state nuclear magnetic resonance demonstrates that riluzole, NS309, and CyPPA analogs bind at this bipartite pocket. We demonstrate, by patch-clamp electrophysiology, that both classes of ligand interact with overlapping but distinct residues within this pocket. These data define a clinically important site, laying the foundations for further studies of the mechanism of action of riluzole and related molecules., (Copyright © 2018 Elsevier Ltd. All rights reserved.)
- Published
- 2018
- Full Text
- View/download PDF