25 results on '"I Peter"'
Search Results
2. List of Contributors
- Author
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Abraham, Kenneth F., primary, Adam, Paul, additional, Ahmerkamp, S., additional, Aspden, Rebecca J., additional, Baldwin, Andrew H., additional, Baltz, Donald M., additional, Barbier, Edward B., additional, Barendregt, Aat, additional, Black, Kevin S., additional, Boorman, Laurence A., additional, Brinson, Mark M., additional, Broome, Stephen W., additional, Brown, Benjamin M., additional, Burchell, Michael R., additional, Cahoon, Donald R., additional, Carniello, L., additional, Castañeda-Moya, Edward, additional, Christie, Elizabeth, additional, Cook, P.L.M., additional, Craft, Christopher B., additional, Currin, Carolyn A., additional, D'Alpaos, Andrea, additional, D'Alpaos, L., additional, Davis, Stephen, additional, de Beer, Dirk, additional, Defina, A., additional, Ellison, Joanna C., additional, Flynn, Laura L., additional, Fortune, Irene, additional, French, Jon, additional, Gao, Shu, additional, Haight, Christopher, additional, Hammerschlag, Richard S., additional, Hartig, Ellen Kracauer, additional, Holmer, Marianne, additional, Hopkinson, Charles S., additional, Jefferies, Robert L., additional, Joye, S.B., additional, Kelleway, Jeffrey J., additional, Kirby, Jason R., additional, Lanzoni, Stefano, additional, Larson, Marit, additional, Lavery, Paul S., additional, Leonardi, Nicoletta, additional, Lewis, Roy R., additional, Lovelock, Catherine, additional, Marani, Marco, additional, Martini, I. Peter, additional, McKee, Karen L., additional, Megonigal, J. Patrick, additional, Midway, Stephen, additional, Möller, Iris, additional, Morrison, R.I. Guy, additional, Neubauer, Scott C., additional, Paterson, David M., additional, Perillo, Gerardo M.E., additional, Piccolo, Maria Cintia, additional, Plater, Andrew, additional, Pratolongo, Paula, additional, Rinaldo, Andrea, additional, Rivera-Monroy, Victor H., additional, Rogers, Kerrylee, additional, Rovai, Andre S., additional, Saintilan, Neil, additional, Sasser, Charles E., additional, Schutte, C.A., additional, Seidel, M., additional, Sergienko, Liudmila A., additional, Serrano, Oscar, additional, Suman, Daniel O., additional, Swadek, Rebecca K., additional, Tobias, Craig, additional, Twilley, Robert R., additional, Visser, Jenneke M., additional, Whigham, Dennis F., additional, Wolanski, Eric, additional, Woodroffe, Colin D., additional, and Wu, C.S., additional
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- 2019
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3. Nephrotoxicity and highly active antiretroviral therapy: Mitigating action of Momordica charantia
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Oluwatosin Olalekan Ogedengbe, Ayoola Isaac Jegede, Onyemaechi Okpara Azu, Edwin C.S. Naidu, Ugochukwu Offor, and Aniekan I. Peter
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0301 basic medicine ,Thiobarbituric acid ,Health, Toxicology and Mutagenesis ,Pharmacology ,Toxicology ,medicine.disease_cause ,Nephrotoxicity ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Therapeutic index ,lcsh:RA1190-1270 ,medicine ,TBARS ,lcsh:Toxicology. Poisons ,Kidney ,Creatinine ,business.industry ,030104 developmental biology ,medicine.anatomical_structure ,chemistry ,030220 oncology & carcinogenesis ,Albuminuria ,medicine.symptom ,business ,Oxidative stress - Abstract
Momordica charantia (M. charantia) is known for its antioxidant and antidiabetic properties. The aim of this study is to investigate the renoprotective effects of M. charantia in rats following treatment with highly active antiretroviral therapy (HAART) regimen triplavar. Adult male Sprague-Dawley rats weighing 178.1–220.5 g (n = 36) were divided into six groups (A–F) with each group comprising of six (n = 6) rats. The drugs and extract were administered via oral gavage. The therapeutic dose of triplavar was adjusted using the human therapeutic dose equivalent for the rat model. Animals were euthanized on the tenth week with kidneys removed for examination and blood obtained via cardiac puncture. Levels of oxidative stress enzymes (superoxide dismutase-SOD, catalase-CAT, and reduced glutathione-GSH) were significantly lowered in all groups not receiving M. charantia. The levels of thiobarbituric acid reactive substances (TBARS) were increased resulting in free radical formation via auto-oxidation. Renal parameters showed no albuminuria, normal blood urea nitrogen (BUN), serum creatinine (SCr) and electrolytes in groups treated with M. charantia. HAART treated (Group B) showed severe albuminuria, a significantly (p
- Published
- 2018
4. Northern Polar Coastal Wetlands
- Author
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I. Peter Martini, R. I. Guy Morrison, Liudmila Sergienko, Kenneth F. Abraham, and Robert L. Jefferies
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geography ,Oceanography ,geography.geographical_feature_category ,Habitat ,Arctic ,Deglaciation ,Sea ice ,Climate change ,Wetland ,Ice sheet ,Permafrost - Abstract
Northern Polar coastal wetlands contain habitats of great importance to wildlife and human populations. Their distribution is determined by underlying geoecological events and processes. They are characterized by cold climate and the presence of ice (sea ice and permafrost) and are influenced by other biotic and abiotic processes (sedimentation, salinity, tidal action, and freshwater input). Pleistocene ice sheets have molded the landscape, and their retreat and subsequent isostatic uplift have led to continuing postglacial local land emersion. Diversity of Arctic wetland plants and fauna is relatively low and characterized by few, widely distributed species; diversity decreases at higher latitudes. On the Russian Arctic coast, progressive deglaciation has favored northward migration of plants from Atlantic/European sources to western areas and Pacific/American ones to eastern areas. Arctic wetlands are of major importance for waterbirds as breeding and migration areas; they are vulnerable to a wide variety of environmental changes, especially climatic change.
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- 2019
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5. List of Contributors
- Author
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Kenneth F. Abraham, Paul Adam, S. Ahmerkamp, Rebecca J. Aspden, Andrew H. Baldwin, Donald M. Baltz, Edward B. Barbier, Aat Barendregt, Kevin S. Black, Laurence A. Boorman, Mark M. Brinson, Stephen W. Broome, Benjamin M. Brown, Michael R. Burchell, Donald R. Cahoon, L. Carniello, Edward Castañeda-Moya, Elizabeth Christie, P.L.M. Cook, Christopher B. Craft, Carolyn A. Currin, Andrea D'Alpaos, L. D'Alpaos, Stephen Davis, Dirk de Beer, A. Defina, Joanna C. Ellison, Laura L. Flynn, Irene Fortune, Jon French, Shu Gao, Christopher Haight, Richard S. Hammerschlag, Ellen Kracauer Hartig, Marianne Holmer, Charles S. Hopkinson, Robert L. Jefferies, S.B. Joye, Jeffrey J. Kelleway, Jason R. Kirby, Stefano Lanzoni, Marit Larson, Paul S. Lavery, Nicoletta Leonardi, Roy R. Lewis, Catherine Lovelock, Marco Marani, I. Peter Martini, Karen L. McKee, J. Patrick Megonigal, Stephen Midway, Iris Möller, R.I. Guy Morrison, Scott C. Neubauer, David M. Paterson, Gerardo M.E. Perillo, Maria Cintia Piccolo, Andrew Plater, Paula Pratolongo, Andrea Rinaldo, Victor H. Rivera-Monroy, Kerrylee Rogers, Andre S. Rovai, Neil Saintilan, Charles E. Sasser, C.A. Schutte, M. Seidel, Liudmila A. Sergienko, Oscar Serrano, Daniel O. Suman, Rebecca K. Swadek, Craig Tobias, Robert R. Twilley, Jenneke M. Visser, Dennis F. Whigham, Eric Wolanski, Colin D. Woodroffe, and C.S. Wu
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- 2019
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6. Preface and Acknowledgements
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Martini, I. Peter, primary
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- 1986
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7. Preface and Acknowledgements
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I. Peter Martini
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- 1986
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8. Micro- and nano-plastics, intestinal inflammation, and inflammatory bowel disease: A review of the literature.
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Agrawal M, Vianello A, Picker M, Simon-Sánchez L, Chen R, Estevinho MM, Weinstein K, Lykkemark J, Jess T, Peter I, Colombel JF, Allin KH, and Vollertsen J
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- Humans, Plastics, Animals, Microplastics, Nanoparticles, Inflammation, Environmental Pollutants, Environmental Exposure, Inflammatory Bowel Diseases
- Abstract
Plastics, encompassing a wide range of polymeric materials, and their downstream products (micro- and nanoplastics, MNPs) are accumulating in the environment at an alarming rate, and they are linked to adverse human health outcomes. Considering that ingestion is a main source of MNPs exposure, the impact of plastics is particularly relevant towards intestinal inflammation and inflammatory bowel disease (IBD). However, the study of MNPs has been limited by obstacles relating to sample collection, preparation, and microplastics analysis based on optical microscopy and chemical analysis, which we detail in this review alongside potential solutions. We summarize available data on human exposure to MNPs and overall health outcomes, with particular focus on data pertaining to intestinal inflammation, microbiome perturbations, and related outcomes. We include ecologic perspectives, and human, in vitro, and animal model studies. We discuss the way forward in MNPs and IBD research, including knowledge gaps and future research., Competing Interests: Declaration of competing interest The corresponding author confirms on behalf of all authors that there have been no involvements that might raise the question of bias in the work reported or in the conclusions, implications, or opinions stated. MA reports consulting for Douglas Pharmaceutical. AV reports no conflict of interest. MP reports no conflict of interest. LSS reports no conflict of interest. RC reports no conflict of interest. MME reports no conflict of interest. KW reports no conflict of interest. JL reports no conflict of interest. TJ reports consulting for Ferring and Pfizer. IP reports no conflict of interest. JFC reports receiving research grants from AbbVie, Janssen Pharmaceuticals and Takeda; receiving payment for lectures from AbbVie, Amgen, Allergan, Inc. Ferring Pharmaceuticals, Shire, and Takeda; receiving consulting fees from AbbVie, Amgen, Arena Pharmaceuticals, Boehringer Ingelheim, Bristol Myers Squibb, Celgene Corporation, Eli Lilly, Ferring Pharmaceuticals, Galmed Research, Glaxo Smith Kline, Geneva, Iterative Scopes, Janssen Pharmaceuticals, Kaleido Biosciences, Landos, Otsuka, Pfizer, Prometheus, Sanofi, Takeda, TiGenix,; and hold stock options in Intestinal Biotech Development. KHA reports no conflict of interest. JV reports no conflict of interest., (Copyright © 2024 Elsevier B.V. All rights reserved.)
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- 2024
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9. Polygenic risk scores point toward potential genetic mechanisms of type 2 myocardial infarction in people with HIV.
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Lee WJ, Cheng H, Whitney BM, Nance RM, Britton SR, Jordahl K, Lindstrom S, Ruderman SA, Kitahata MM, Saag MS, Willig AL, Burkholder G, Eron JJ, Kovacic JC, Björkegren JLM, Mathews WC, Cachay E, Feinstein MJ, Budoff M, Hunt PW, Moore RD, Keruly J, McCaul ME, Chander G, Webel A, Mayer KH, Delaney JA, Crane PK, Martinez C, Crane HM, Hao K, and Peter I
- Subjects
- Humans, Risk Factors, Myocardium, Myocardial Infarction diagnosis, Myocardial Infarction genetics, Anterior Wall Myocardial Infarction complications, HIV Infections epidemiology, HIV Infections genetics
- Abstract
Background: People with human immunodeficiency virus (HIV) infection (PWH) are at higher risk of myocardial infarction (MI) than those without HIV. About half of MIs in PWH are type 2 (T2MI), resulting from mismatch between myocardial oxygen supply and demand, in contrast to type 1 MI (T1MI), which is due to primary plaque rupture or coronary thrombosis. Despite worse survival and rising incidence in the general population, evidence-based treatment recommendations for T2MI are lacking. We used polygenic risk scores (PRS) to explore genetic mechanisms of T2MI compared to T1MI in PWH., Methods: We derived 115 PRS for MI-related traits in 9541 PWH enrolled in the Centers for AIDS Research Network of Integrated Clinical Systems cohort with adjudicated T1MI and T2MI. We applied multivariate logistic regression analyses to determine the association with T1MI and T2MI. Based on initial findings, we performed gene set enrichment analysis of the top variants composing PRS associated with T2MI., Results: We found that T1MI was strongly associated with PRS for cardiovascular disease, lipid profiles, and metabolic traits. In contrast, PRS for alcohol dependence and cholecystitis, significantly enriched in energy metabolism pathways, were predictive of T2MI risk. The association remained after the adjustment for actual alcohol consumption., Conclusions: We demonstrate distinct genetic traits associated with T1MI and T2MI among PWH further highlighting their etiological differences and supporting the role of energy regulation in T2MI pathogenesis., Competing Interests: Declaration of Competing Interest The authors declare no conflict of interest., (Copyright © 2023 The Author(s). Published by Elsevier B.V. All rights reserved.)
- Published
- 2023
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10. Location-Specific Oral Microbiome Possesses Features Associated With CKD.
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Hu J, Iragavarapu S, Nadkarni GN, Huang R, Erazo M, Bao X, Verghese D, Coca S, Ahmed MK, and Peter I
- Abstract
Introduction: Chronic kidney disease (CKD), a progressive loss of renal function, can lead to serious complications if underdiagnosed. Many studies suggest that the oral microbiota plays important role in the health of the host; however, little is known about the association between the oral microbiota and CKD pathogenesis., Methods: In this study, we surveyed the oral microbiota in saliva, the left and right molars, and the anterior mandibular lingual area from 77 participants (18 with and 59 without CKD), and tested their association with CKD to identify microbial features that may be predictive of CKD status., Results: The overall oral microbiota composition significantly differed by oral locations and was associated with CKD status in saliva and anterior mandibular lingual samples. In CKD patients, we observed a significant enrichment of Neisseria and depletion of Veillonella in both sample types and a lower prevalence of Streptococcus in saliva after adjustment for other comorbidities. Furthermore, we detected a negative association of Neisseria and Streptococcus genera with the kidney function as measured by estimated glomerular filtration rate. Neisseria abundance also correlated with plasma interleukin-18 levels., Conclusion: We demonstrate the association of the oral microbiome with CKD and inflammatory kidney biomarkers, highlighting a potential role of the commensal bacteria in CKD pathogenesis. A better understanding of the interplay between the oral microbiota and CKD may help in the development of new strategies to identify at-risk individuals or to serve as a novel target for therapeutic intervention.
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- 2017
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11. Expanded genetic screening panel for the Ashkenazi Jewish population.
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Baskovich B, Hiraki S, Upadhyay K, Meyer P, Carmi S, Barzilai N, Darvasi A, Ozelius L, Peter I, Cho JH, Atzmon G, Clark L, Yu J, Lencz T, Pe'er I, Ostrer H, and Oddoux C
- Subjects
- Female, Gene Frequency, Genetic Carrier Screening methods, Heterozygote, Humans, Male, Pregnancy, Genetic Testing, Jews genetics, Mutation genetics, Prenatal Diagnosis
- Abstract
Purpose: Carrier screening programs that identify the presence of known mutations have been effective for reducing the incidence of autosomal recessive conditions in the Ashkenazi Jewish (AJ) population and other populations. Yet, these programs have not realized their full potential. Furthermore, many known autosomal recessive and dominant conditions are not screened for and the molecular basis of other conditions for which screening might be offered is unknown., Methods: Through literature review and annotation of full sequenced genomes from healthy individuals, we expanded the list of mutations. Mutations were identified in a sample of 128 fully sequenced AJ genomes that were filtered through clinical databases and curated manually for clinical validity and utility using the American College of Medical Genetics and Genomics scoring (ACMG) system. Other known mutations were identified through literature review., Results: A panel of 163 mutations was identified for 76 autosomal recessive, 24 autosomal dominant, and 3 X-linked disorders., Conclusion: Screening for a broader range of disorders not only could further reduce the incidence of autosomal recessive disorders but also could offer the benefits of early or presymptomatic diagnosis.Genet Med 18 5, 522-528.
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- 2016
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12. Reciprocal duplication of the Williams-Beuren syndrome deletion on chromosome 7q11.23 is associated with schizophrenia.
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Mulle JG, Pulver AE, McGrath JA, Wolyniec PS, Dodd AF, Cutler DJ, Sebat J, Malhotra D, Nestadt G, Conrad DF, Hurles M, Barnes CP, Ikeda M, Iwata N, Levinson DF, Gejman PV, Sanders AR, Duan J, Mitchell AA, Peter I, Sklar P, O'Dushlaine CT, Grozeva D, O'Donovan MC, Owen MJ, Hultman CM, Kähler AK, Sullivan PF, Kirov G, and Warren ST
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- Humans, Longitudinal Studies, Schizophrenia complications, Williams Syndrome complications, Chromosomes, Human, Pair 7 genetics, DNA Copy Number Variations genetics, Schizophrenia genetics, Williams Syndrome genetics
- Abstract
Background: Several copy number variants (CNVs) have been implicated as susceptibility factors for schizophrenia (SZ). Some of these same CNVs also increase risk for autism spectrum disorders, suggesting an etiologic overlap between these conditions. Recently, de novo duplications of a region on chromosome 7q11.23 were associated with autism spectrum disorders. The reciprocal deletion of this region causes Williams-Beuren syndrome., Methods: We assayed an Ashkenazi Jewish cohort of 554 SZ cases and 1014 controls for genome-wide CNV. An excess of large rare and de novo CNVs were observed, including a 1.4 Mb duplication on chromosome 7q11.23 identified in two unrelated patients. To test whether this 7q11.23 duplication is also associated with SZ, we obtained data for 14,387 SZ cases and 28,139 controls from seven additional studies with high-resolution genome-wide CNV detection. We performed a meta-analysis, correcting for study population of origin, to assess whether the duplication is associated with SZ., Results: We found duplications at 7q11.23 in 11 of 14,387 SZ cases with only 1 in 28,139 control subjects (unadjusted odds ratio 21.52, 95% confidence interval: 3.13-922.6, p value 5.5 × 10(-5); adjusted odds ratio 10.8, 95% confidence interval: 1.46-79.62, p value .007). Of three SZ duplication carriers with detailed retrospective data, all showed social anxiety and language delay premorbid to SZ onset, consistent with both human studies and animal models of the 7q11.23 duplication., Conclusions: We have identified a new CNV associated with SZ. Reciprocal duplication of the Williams-Beuren syndrome deletion at chromosome 7q11.23 confers an approximately tenfold increase in risk for SZ., (Copyright © 2014 Society of Biological Psychiatry. Published by Elsevier Inc. All rights reserved.)
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- 2014
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13. An Ashkenazi Jewish SMN1 haplotype specific to duplication alleles improves pan-ethnic carrier screening for spinal muscular atrophy.
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Luo M, Liu L, Peter I, Zhu J, Scott SA, Zhao G, Eversley C, Kornreich R, Desnick RJ, and Edelmann L
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- Genetic Testing, Genetic Variation, Haplotypes, Humans, Microsatellite Repeats, Muscular Atrophy, Spinal ethnology, Sequence Analysis, DNA, Gene Duplication, Jews genetics, Muscular Atrophy, Spinal genetics, Survival of Motor Neuron 1 Protein genetics
- Abstract
Purpose: Spinal muscular atrophy is a common autosomal-recessive disorder caused by mutations of the SMN1 gene. Spinal muscular atrophy carrier screening uses dosage-sensitive methods that determine SMN1 copy number, and the frequency of carriers varies by ethnicity, with detection rates ranging from 71 to 94% due to the inability to identify silent (2 + 0) carriers with two copies of SMN1 on one chromosome 5 and deletion on the other. We hypothesized that identification of deletion and/or duplication founder alleles might provide an approach to identify silent carriers in various ethnic groups., Methods: SMN1 founder alleles were investigated in the Ashkenazi Jewish population by microsatellite analysis and next-generation sequencing., Results: An extended haplotype block, specific to Ashkenazi Jewish SMN1 duplications, was identified by microsatellite analysis, and next-generation sequencing of SMN1 further defined a more localized haplotype. Of note, six novel SMN1 sequence variants were identified that were specific to duplications and not present on single-copy alleles. The haplotype was also identified on SMN1 duplication alleles in additional ethnic groups., Conclusion: Identification of these novel variants in an individual with two copies of SMN1 significantly improves the accuracy of residual risk estimates and has important implications for spinal muscular atrophy carrier screening.
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- 2014
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14. Status of vitamins B-12 and B-6 but not of folate, homocysteine, and the methylenetetrahydrofolate reductase C677T polymorphism are associated with impaired cognition and depression in adults.
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Moorthy D, Peter I, Scott TM, Parnell LD, Lai CQ, Crott JW, Ordovás JM, Selhub J, Griffith J, Rosenberg IH, Tucker KL, and Troen AM
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- Adult, Aged, Cognition Disorders blood, Cognition Disorders genetics, Cohort Studies, Cross-Sectional Studies, Depression blood, Depression genetics, Female, Gene Expression Regulation, Enzymologic, Humans, Male, Methylenetetrahydrofolate Reductase (NADPH2) genetics, Middle Aged, Folic Acid blood, Homocysteine blood, Methylenetetrahydrofolate Reductase (NADPH2) metabolism, Polymorphism, Genetic, Vitamin B 12 blood, Vitamin B 6 blood
- Abstract
The C677T polymorphism of the methylenetetrahydrofolate reductase (MTHFR) gene differs in frequency in various ethnic groups that have differing prevalence of age-related cognitive impairments. We used a series of neuro-psychological tests to examine the association of the MTHFR C677T polymorphism with cognition and depression and also to assess whether genotype modifies the association of folate and homocysteine with these outcomes. This study analyzed pooled cross-sectional data from 2 ethnically diverse cohorts of community-living adults: the Boston Puerto Rican Health Study (n = 939) and the Nutrition, Aging, and Memory in Elders study (n = 1017). Individuals in both cohorts underwent anthropometric and laboratory measurements and dietary and health assessments using validated questionnaires between the years 2003 and 2007. Cognitive outcomes included measures of global cognition [Mini-Mental Status Exam (MMSE)], depression (Center for Epidemiological Studies Depression Scale), and 3 factor scores for the domains of attention, executive function, and memory that were derived from a detailed set of neuropsychological tests. Low plasma vitamin B-12 concentrations were associated with poorer MMSE scores and higher depression scores, and low vitamin B-6 concentrations were associated with lower MMSE and worse attention and executive function in the multivariate analysis. In contrast, MTHFR genotype, folate, and homocysteine were not associated with cognition or depression in either ethnicity-pooled or stratified analysis. The current study did not find evidence of an association between the MTHFR C677T TT genotype and impaired cognition or depression in a population with adequate folate status and a high prevalence of cognitive impairment and depression.
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- 2012
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15. Obesity susceptibility loci and dietary intake in the Look AHEAD Trial.
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McCaffery JM, Papandonatos GD, Peter I, Huggins GS, Raynor HA, Delahanty LM, Cheskin LJ, Balasubramanyam A, Wagenknecht LE, and Wing RR
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- Dairy Products, Diabetes Mellitus, Type 2 complications, Diet Surveys, Dietary Proteins, Female, Genetic Predisposition to Disease, Humans, Male, Middle Aged, Obesity complications, Risk Factors, Surveys and Questionnaires, Alleles, Diabetes Mellitus, Type 2 genetics, Diet, Energy Intake genetics, Feeding Behavior physiology, Genetic Loci, Obesity genetics
- Abstract
Background: Genome-wide association studies (GWAS) have identified consistent associations with obesity. However, the mechanisms remain unclear., Objective: The objective was to determine the association between obesity susceptibility loci and dietary intake., Design: The association of GWAS-identified obesity risk alleles (FTO, MC4R, SH2B1, BDNF, INSIG2, TNNI3K, NISCH-STAB1, MTIF3, MAP2K5, QPCTL/GIPR, and PPARG) with dietary intake, measured through food-frequency questionnaires, was investigated in 2075 participants from the Look AHEAD (Action for Health in Diabetes) clinical trial. We adjusted for age, sex, population stratification, and study site., Results: Obesity risk alleles at FTO rs1421085 significantly predicted more eating episodes per day (P = 0.001)-an effect that persisted after adjustment for body weight (P = 0.004). Risk variants within BDNF were significantly associated with more servings from the dairy product and the meat, eggs, nuts, and beans food groups (P ≤ 0.004). The risk allele at SH2B1 rs4788099 was significantly associated with more servings of dairy products (P = 0.001), whereas the risk allele at TNNI3K rs1514176 was significantly associated with a lower percentage of energy from protein (P = 0.002)., Conclusion: These findings suggest that obesity risk loci may affect the pattern and content of food consumption among overweight or obese individuals with type 2 diabetes. The Look AHEAD Genetic Ancillary Study was registered at clinicaltrials.gov as NCT01270763 and the Look AHEAD study as NCT00017953.
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- 2012
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16. Proof of concept study to assess fetal gene expression in amniotic fluid by nanoarray PCR.
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Massingham LJ, Johnson KL, Bianchi DW, Pei S, Peter I, Cowan JM, Tantravahi U, and Morrison TB
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- Female, Humans, Lung metabolism, Male, Regression Analysis, Amniotic Fluid metabolism, Fetus metabolism, Gene Expression Regulation, Developmental, Microarray Analysis methods, Polymerase Chain Reaction methods
- Abstract
Microarray analysis of cell-free RNA in amniotic fluid (AF) supernatant has revealed differential fetal gene expression as a function of gestational age and karyotype. Once informative genes are identified, research moves to a more focused platform such as quantitative reverse transcriptase-PCR. Standardized NanoArray PCR (SNAP) is a recently developed gene profiling technology that enables the measurement of transcripts from samples containing reduced quantities or degraded nucleic acids. We used a previously developed SNAP gene panel as proof of concept to determine whether fetal functional gene expression could be ascertained from AF supernatant. RNA was extracted and converted to cDNA from 19 AF supernatant samples of euploid fetuses between 15 to 20 weeks of gestation, and transcript abundance of 21 genes was measured. Statistically significant differences in expression, as a function of advancing gestational age, were observed for 5 of 21 genes. ANXA5, GUSB, and PPIA showed decreasing gene expression over time, whereas CASC3 and ZNF264 showed increasing gene expression over time. Statistically significantly increased expression of MTOR and STAT2 was seen in female compared with male fetuses. This study demonstrates the feasibility of focused fetal gene expression analysis using SNAP technology. In the future, this technique could be optimized to examine specific genes instrumental in fetal organ system function, which could be a useful addition to prenatal care., (Copyright © 2011 American Society for Investigative Pathology and the Association for Molecular Pathology. Published by Elsevier Inc. All rights reserved.)
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- 2011
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17. Comparative performance of gene-based warfarin dosing algorithms in a multiethnic population.
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Lubitz SA, Scott SA, Rothlauf EB, Agarwal A, Peter I, Doheny D, Van Der Zee S, Jaremko M, Yoo C, Desnick RJ, and Halperin JL
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- Aged, Dose-Response Relationship, Drug, Female, Humans, International Normalized Ratio, Male, Middle Aged, Pharmacogenetics, Algorithms, Anticoagulants administration & dosage, Ethnicity genetics, Warfarin administration & dosage
- Abstract
Summary Background: Gene-based warfarin dosing algorithms have largely been developed in homogeneous populations, and their generalizability has not been established., Objectives: We sought to assess the performance of published algorithms in a racially diverse and multiethnic sample, and determine if additional clinical variables or genetic variants associated with dose could enhance algorithm performance., Patients and Methods: In 145 compliant patients on warfarin with a goal international normalized ratio (INR) of 2-3, stable, therapeutic doses were compared with predicted doses using 12 reported algorithms that incorporated CYP2C9 and VKORC1 variants. Additional covariates tested with each model included race, concurrent medications, medications known to interact with warfarin and previously described CYP4F2, CALU and GGCX variants., Results: The mean patient age was 67 +/- 14 years; 90 (62%) were male. Eighty-two (57%) were Caucasian, 28 (19%) African-American, 20 (14%) Hispanic and 15 (10%) Asian. The median warfarin dose was 35 mg per week (interquartile range 23-53 mg per week). Gene-based dosing algorithms explained 37-55% of the variation in warfarin dose requirements. Neither the addition of race, number of concurrent medications nor the number of concurrent medications interacting with warfarin enhanced algorithm performance. Similarly, consideration of CYP4F2, CALU or GGCX variant genotypes did not improve algorithms., Conclusions: Existing gene-based dosing algorithms explained between approximately one-third and one-half of the variability in warfarin dose requirements in this racially and ethnically diverse cohort. Additional clinical and recently described genetic variants associated with warfarin dose did not enhance prediction in our patient population.
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- 2010
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18. Genetic variation at the NPC1L1 gene locus, plasma lipoproteins, and heart disease risk in the elderly.
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Polisecki E, Peter I, Simon JS, Hegele RA, Robertson M, Ford I, Shepherd J, Packard C, Jukema JW, de Craen AJ, Westendorp RG, Buckley BM, and Schaefer EJ
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- Aged, Aged, 80 and over, Coronary Disease drug therapy, Coronary Disease epidemiology, Female, Humans, Male, Membrane Transport Proteins, Polymorphism, Single Nucleotide, Pravastatin therapeutic use, Risk, Treatment Outcome, Coronary Disease blood, Coronary Disease genetics, Genetic Loci genetics, Genetic Predisposition to Disease, Genetic Variation, Lipoproteins blood, Membrane Proteins genetics
- Abstract
Niemann-Pick C1-like 1 protein (NPC1L1) plays a critical role in intestinal cholesterol absorption. Our objective was to examine whether five variants (-133A>G, -18A>C, L272L, V1296V, and U3_28650A>G) at the NPC1L1 gene have effects on lipid levels, prevalence, and incidence of coronary heart disease (CHD) and lipid-lowering response to pravastatin. We studied 5,804 elderly participants from the PROSPER study, who were randomized to prava-statin 40 mg/day or placebo and were followed on average for 3.2 years. In the adjusted gender-pooled analyses, homozygous carriers of the minor alleles at four NPC1L1 sites (-18A>C, L272L, V1296V, and U3_28650A>G, minor allele frequencies 0.15-0.33) had 2-8% higher LDL-cholesterol (LDL-C) levels at baseline than homozygous carriers of the common alleles (P < 0.05). Homozygotes for the rare alleles also had a significant increase in the risk of CHD events on trial (range of hazard ratios 1.50-1.67; P < 0.02), regardless of the treatment regimen. The -133 A>G polymorphism and not other variants was associated with 6 month LDL-C lowering (P = 0.02). Our data indicate that variation in the NPC1L1 gene is associated with plasma total and LDL-C levels and CHD risk.
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- 2010
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19. Genetic variation at the LDL receptor and HMG-CoA reductase gene loci, lipid levels, statin response, and cardiovascular disease incidence in PROSPER.
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Polisecki E, Muallem H, Maeda N, Peter I, Robertson M, McMahon AD, Ford I, Packard C, Shepherd J, Jukema JW, Westendorp RG, de Craen AJ, Buckley BM, Ordovas JM, and Schaefer EJ
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- Aged, Aged, 80 and over, Cardiovascular Diseases genetics, Cardiovascular Diseases prevention & control, Cholesterol, HDL drug effects, Cholesterol, LDL drug effects, Female, Humans, Male, Risk Factors, Triglycerides, Genetic Predisposition to Disease genetics, Hydroxymethylglutaryl CoA Reductases genetics, Hydroxymethylglutaryl-CoA Reductase Inhibitors pharmacology, Polymorphism, Single Nucleotide genetics, Pravastatin pharmacology, Receptors, LDL genetics
- Abstract
Our purpose was to evaluate associations of single nucleotide polymorphisms (SNPs) at the low density lipoprotein (LDL) receptor (LDLR C44857T, minor allele frequency (MAF) 0.26, and A44964G, MAF 0.25, both in the untranslated region) and HMG-CoA reductase (HMGCR i18 T>G, MAF 0.019) gene loci with baseline lipid values, statin-induced LDL-cholesterol (C) lowering response, and incident coronary heart disease (CHD) and cardiovascular disease (CVD) on trial. Our population consisted of 5804 elderly men and women with vascular disease or one or more vascular disease risk factors, who were randomly allocated to pravastatin or placebo. Other risk factors and apolipoprotein (apo) E phenotype were controlled for in the analysis. Despite a prior report, no relationships with the HMGCR SNP were noted. For the LDLR SNPs C44857T and A44964G we noted significant associations of the rare alleles with baseline LDL-C and triglyceride levels, a modest association of the C44857T with LDL-C lowering to pravastatin in men, and significant associations with incident CHD and CVD of both SNPs, especially in men on pravastatin. Our data indicate that genetic variation at the LDLR locus can affect baseline lipids, response to pravastatin, and CVD risk in subjects placed on statin treatment.
- Published
- 2008
- Full Text
- View/download PDF
20. Genetic variation at the PCSK9 locus moderately lowers low-density lipoprotein cholesterol levels, but does not significantly lower vascular disease risk in an elderly population.
- Author
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Polisecki E, Peter I, Robertson M, McMahon AD, Ford I, Packard C, Shepherd J, Jukema JW, Blauw GJ, Westendorp RG, de Craen AJ, Trompet S, Buckley BM, Murphy MB, Ordovas JM, and Schaefer EJ
- Subjects
- Aged, Aged, 80 and over, Cholesterol, LDL drug effects, Coronary Disease drug therapy, Female, Genetic Predisposition to Disease genetics, Humans, Linkage Disequilibrium, Male, Odds Ratio, Proprotein Convertase 9, Proprotein Convertases, Cholesterol, LDL genetics, Coronary Disease genetics, Hydroxymethylglutaryl-CoA Reductase Inhibitors pharmacology, Polymorphism, Single Nucleotide genetics, Pravastatin genetics, Pravastatin pharmacology, Serine Endopeptidases genetics
- Abstract
Caucasian carriers of the T allele at R46L in the proprotein convertase subtilisin/kexin type 9 (PCSK9) locus have been reported to have 15% lower low-density lipoprotein (LDL) cholesterol (C) levels and 47% lower coronary heart disease (CHD) risk. Our objective was to examine two PCSK9 single nucleotide polymorphisms (SNPs), R46L and E670G, in 5783 elderly participants in Prospective Study of Pravastatin in the Elderly at Risk (PROSPER), of whom 43% had a history of vascular disease at baseline, and who were randomized to pravastatin or placebo with followup. In this population 3.5% were carriers of the T allele at R46L, and these subjects had significantly (p<0.001) lower levels of LDL C (mean, -10%), no difference in LDL C lowering response to pravastatin, and a non-significant 19% unadjusted and 9% adjusted decreased risk of vascular disease at baseline, with no on trial effect. Moreover, 6.0% were carriers of the G allele at E670G with no significant relationships with baseline LDL C, response to pravastatin, or vascular disease risk being observed. Our data support the concept that the rare allele of the R46L SNP at the PCSK9 locus significantly lowers LDL C, but does not greatly reduce CHD risk in an elderly population with a high prevalence of cardiovascular disease.
- Published
- 2008
- Full Text
- View/download PDF
21. Circulating cell-free fetal messenger RNA levels after fetoscopic interventions of complicated pregnancies.
- Author
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Tjoa ML, Jani J, Lewi L, Peter I, Wataganara T, Johnson KL, Bianchi DW, and Deprest JA
- Subjects
- Female, Gene Expression, Globins analysis, Glyceraldehyde-3-Phosphate Dehydrogenases blood, Hernias, Diaphragmatic, Congenital, Humans, Placental Lactogen analysis, Polymerase Chain Reaction, Pregnancy, Fetal Diseases surgery, Fetofetal Transfusion surgery, Fetoscopy, Hernia, Diaphragmatic surgery, Laser Coagulation methods, RNA, Messenger analysis
- Abstract
Objective: The aim of this study was to examine fetal gene expression in maternal plasma after fetoscopic intervention for twin-twin transfusion syndrome or congenital diaphragmatic hernia., Study Design: Twelve women with pregnancies that were complicated by twin-twin transfusion syndrome and 10 women carrying fetuses with congenital diaphragmatic hernia were sampled before and sequentially after treatment. Levels of glyceraldehyde-3-phosphate dehydrogenase, human placental lactogen, and gamma globin messenger RNA were measured by real-time reverse transcriptase polymerase chain reaction amplification., Results: At all time points, glyceraldehyde-3-phosphate dehydrogenase messenger RNA levels were higher in the congenital diaphragmatic hernia cases than in the twin-twin transfusion syndrome cases (P < .05), but during the immediate postoperative observation period, there were no significant changes in glyceraldehyde-3-phosphate dehydrogenase, human placental lactogen, or gamma globin messenger RNA levels in individual patients or patients who were grouped by procedure., Conclusion: Fetoscopic intervention of complicated pregnancies does not affect circulating fetal messenger RNA levels, which is in contrast to earlier observations that circulating fetal DNA levels increase after laser ablation for twin-twin transfusion syndrome. Plasma glyceraldehyde-3-phosphate dehydrogenase messenger RNA levels could be a potential novel biomarker for fetal trauma.
- Published
- 2006
- Full Text
- View/download PDF
22. Estrogen receptor-alpha variants are associated with lipoprotein size distribution and particle levels in women: the Framingham Heart Study.
- Author
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Demissie S, Cupples LA, Shearman AM, Gruenthal KM, Peter I, Schmid CH, Karas RH, Housman DE, Mendelsohn ME, and Ordovas JM
- Subjects
- Alleles, Estrogen Receptor alpha blood, Female, Gene Frequency, Genetic Markers, Haplotypes, Heart Diseases blood, Humans, Linkage Disequilibrium, Magnetic Resonance Spectroscopy, Menopause blood, Middle Aged, Polymerase Chain Reaction, DNA genetics, Estrogen Receptor alpha genetics, Heart Diseases genetics, Lipoproteins, LDL blood, Polymorphism, Genetic
- Abstract
Plasma lipid profile is affected by endogenous estrogen levels and hormone replacement therapy (HRT). As plasma lipid concentrations have a significant heritable basis and the effects of both endogenous estrogen and use of HRT are mediated by estrogen receptors, we sought to investigate the relationships between polymorphisms in estrogen receptor-alpha (ESR1) and plasma lipid and lipoprotein concentrations. We analyzed data from 854 women (mean age 52+/-10 years) from the Framingham Heart Study. A TA repeat in the promoter region, c.30T>C in exon 1, c.454-397T>C, and c.454-351A>G in intron 1, all in linkage disequilibrium (LD), were significantly associated with low-density lipoprotein (LDL) particle size and concentration of small LDL particles. Women with the c.454-397C allele had larger LDL particle size (21.09+/-0.02 nm versus 21.01+/-0.03 nm, p=0.021) concurrent with lower small LDL particle concentration (0.47+/-0.02 mmol/L versus 0.58+/-0.03 mmol/L, p=0.008). Moreover, the TA[L]-c.30C-c.454-397C-c.454-351G haplotype (frequency, 32%) was associated with lower small LDL particle concentrations (-0.06+/-0.03 mmol/L change associated with each copy of this haplotype, p=0.011) when compared to the TA[S]-c.30T-c.454-397T-c.454-351A haplotype (frequency, 46%), where L and S are long and short TA repeats. Our results suggest that common ESR1 polymorphisms have a significant effect on lipoprotein metabolism in women.
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- 2006
- Full Text
- View/download PDF
23. Placental volume, as measured by 3-dimensional sonography and levels of maternal plasma cell-free fetal DNA.
- Author
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Wataganara T, Metzenbauer M, Peter I, Johnson KL, and Bianchi DW
- Subjects
- Cross-Sectional Studies, Female, Humans, Imaging, Three-Dimensional, Obstetric Labor, Premature epidemiology, Placenta diagnostic imaging, Pregnancy, Pregnancy Trimester, First, Ultrasonography, Prenatal, DNA blood, Fetal Membranes, Premature Rupture blood, Fetus physiology, Obstetric Labor, Premature blood, Placenta physiology
- Abstract
Objective: Measurement of cell-free fetal (cff) DNA in maternal plasma may have clinical application in prenatal screening for fetal Down syndrome and preeclampsia. Little is known regarding the tissue of origin of these fetal-derived sequences. We tested the hypothesis that if the placenta is the major contributor of cff DNA, then an increased placental volume should be associated with higher maternal plasma cff DNA levels., Study Design: We enrolled 143 pregnant women who underwent first-trimester placental volume measurement using 3-dimensional ultrasonography. Cff DNA in maternal plasma on the day of the scan was quantified by real-time polymerase chain reaction (PCR) amplification of a Y-chromosome sequence. The association between measured placental volume and maternal plasma cff DNA levels was analyzed along with relevant clinical variables., Results: The median (25th, 75th percentiles) maternal plasma cff DNA level was 16.9 genome equivalents (GE)/mL (10.8, 28.7). Raw values were adjusted for gestational age and maternal body mass index. The median (25th, 75th percentiles) placental volume was 53.2 mL (43.0, 64.7), and median placental quotient (ratio of placental volume to fetal crown-rump length) was 1 mm2 (0.8, 1.1). Based on multivariate linear regression analyses, neither of the above placental measurements showed a significant association with maternal plasma cff DNA levels (P = .43 and .43, respectively). A modest association was found between plasma cff DNA levels and gravidity (P = .03)., Conclusion: Our data did not show a significant association between either the placental volume or placental quotient, and maternal plasma cff DNA levels. We speculate that it is the extent of placental apoptosis that primarily affects the amount of cff DNA released into the maternal circulation.
- Published
- 2005
- Full Text
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24. An anti-apoptotic role for galectin-3 in diffuse large B-cell lymphomas.
- Author
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Hoyer KK, Pang M, Gui D, Shintaku IP, Kuwabara I, Liu FT, Said JW, Baum LG, and Teitell MA
- Subjects
- Animals, B-Lymphocytes physiology, Blotting, Western, Cell Line, Transformed, Cell Line, Tumor, Epstein-Barr Virus Infections metabolism, Gene Expression Regulation, Neoplastic, Genes, myc physiology, Humans, Lymphoma, B-Cell metabolism, Lymphoma, Large B-Cell, Diffuse metabolism, Transfection, Apoptosis physiology, Galectin 3 metabolism, Lymphoma, B-Cell pathology, Lymphoma, Large B-Cell, Diffuse pathology
- Abstract
Increased resistance to apoptosis promotes lymphomagenesis with aberrant expression of cell survival proteins such as BCL-2 and c-MYC occurring in distinct lymphoma subtypes. Galectin-3 is an anti-apoptotic protein that protects T cells, macrophages, and breast carcinoma cells from death triggered by a variety of agents. We have found high levels of galectin-3 protein expression in a subset of B-cell neoplasms including diffuse large B-cell lymphoma (DLBCL), primary effusion lymphoma (PEL), and multiple myeloma (MM), in both cell lines and patient samples. However, we failed to detect galectin-3 in Burkitt lymphoma (BL), follicular lymphoma (FL), marginal zone lymphoma (MZL), MALT lymphoma or B-small lymphocytic lymphoma (B-SLL) cell lines or patient samples. To determine whether galectin-3 expression protects B cells from apoptosis, galectin-3-negative BL cells were transfected with a galectin-3 expressing plasmid, which resulted in markedly increased resistance to anti-Fas-induced cell death. In contrast, galectin-3-positive PEL cells transfected with an amino-terminal truncated galectin-3 vector showed increased sensitivity to anti-Fas induced apoptosis. During normal B-cell development, galectin-3 expression was lowest in germinal center and plasma B cells, from which DLBCL, PEL, and MM derive, and highest in long-lived naïve and memory B cells. This pattern of expression suggests that aberrantly increased galectin-3 levels in specific B-cell populations may yield a protective advantage during transformation and/or progression of certain B-cell neoplasms.
- Published
- 2004
- Full Text
- View/download PDF
25. Relationship between parameters of early growth in Israeli infants.
- Author
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Peter I, Yakovenko K, and Livshits G
- Subjects
- Anthropometry, Cephalometry, Female, Genetic Variation, Humans, Infant, Infant, Newborn, Israel, Male, Reference Values, Skull growth & development, Body Height, Body Weight, Child Development, Models, Theoretical
- Abstract
A sample of 1931 Israeli infants was measured for body weight (WT), length (HT) and head circumference (HC) for approximately 2 years. The Count model with 3 parameters was chosen as the best fitting and most parsimonious function to approximate growth of all 3 studied traits. In the model parameter a relates to birth indices, b--to velocity of growth, and c--to rapid early childhood growth, or acceleration. Assuming a difference in growth patterns in the periods of different length, the whole sample was divided into 3 groups: 1) infants with last measurement around the age of 12 months; 2) infants with last measurement around the age of 18 months, and 3) infants with last measurement around the age of 24 months. The individuals measured up to 12 months were presented in all three groups. 27 curve fitting parameters, corresponding to 3 different follow-up intervals for WT, HT and HC were computed for each individual. A high correlation was detected between the a parameters regardless of time interval for 3 measured traits. A negative correlation was found between b and c parameters within the same time interval. A consistent positive correlation was indicated between a and b parameters, especially for body length and head circumference. A principal component analysis extracted five independent factors explaining 88.1% of the total variance. Three first factors retained parameters b and c, describing growth rate and pattern of each trait separately, namely, F1 was responsible for head circumference, F2 was a body length factor, F3 was a body weight factor. F4 extracted all birth indices, observed (HC0, HT0 and WT0) and expected (parameters a). The composition of principal factors allowed us to assume that there might be a strong involvement of a pleiotropic genetic source in determination of birth size traits and an independent genetic source controlling the pattern of growth for each trait separately.
- Published
- 2002
- Full Text
- View/download PDF
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