1. TRACE-seq: A transgenic system for unbiased and non-invasive transcriptome profiling of living cells
- Author
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François Cherbonneau, Guoping Li, Priyanka Gokulnath, Parul Sahu, Aurore Prunevieille, Robert Kitchen, Gilles Benichou, Jérôme Larghero, Ibrahim Domian, and Saumya Das
- Subjects
Cell biology ,Omics ,Transcriptomics ,Science - Abstract
Summary: Dynamic profiling of changes in gene expression in response to stressors in specific microenvironments without requiring cellular destruction remains challenging. Current methodologies that seek to interrogate gene expression at a molecular level require sampling of cellular transcriptome and therefore lysis of the cell, preventing serial analysis of cellular transcriptome. To address this area of unmet need, we have recently developed a technology allowing transcriptomic analysis over time without cellular destruction. Our method, TRACE-seq (TRanscriptomic Analysis Captured in Extracellular vesicles using sequencing), is characterized by a cell-type specific transgene expression. It provides data on the transcriptome inside extracellular vesicles that provides an accurate representation of stress-responsive cellular transcriptomic changes. Thus, the transcriptome of cells expressing TRACE can be followed over time without destroying the source cell, which is a powerful tool for many fields of fundamental and translational biology research.
- Published
- 2022
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