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Combined sewer overflows (CSOs) are a source of microbial contamination of drinking water intakes located downstream from their discharge. To safeguard the quality of the source water, it is essential to evaluate the risk levels associated with these municipal structures. This study compares two risk assessment approaches to test their applicability for assessing the risk of CSOs to drinking water intakes in a highly urbanized watershed. The first approach was based on a deterministic equation that combines the characteristics of an overflow structure allowing the risk to be rated as very low, low, medium, high, or very high. The second probabilistic risk assessment approach yielded findings that are probabilistically distributed across the five levels of risk. This approach was developed by constructing a novel Bayesian network to probabilistically link the different factors defining the exposure of water intakes to the hazards of CSOs. The comparison between the results of these two approaches highlighted the importance of simultaneously considering many scenarios for assessing the risk of contamination of source waters. It was possible to use the Bayesian network rather than the deterministic equation, which only supports one scenario at a time. It was also shown that the deterministic approach often overestimated risk levels for CSO outfalls close to the water intake. This occurred because the assessment process emphasized the distance factor between the discharge point and the water intake, while neglecting other crucial characteristics of the overflow, such as duration and frequency. In particular, the deterministic approach tended to underestimate risk for CSOs associated with low overflow frequencies as it did not support scenarios of overflow duration, unlike the probabilistic approach. The validation and sensitivity analysis of the Bayesian model revealed that the population residing in the CSO's drainage basin, along with the frequency and duration of the overflows, exerted the greatest influence on the resulting risk levels. These factors outweighed other variables utilized in the risk assessment, including vulnerability of the drinking water intake, the type of overflow recorder, pipe diameter, and variables defining the exposure of the water intake to the discharge. In the context of implementing action plans, the Bayesian network is estimated as a cost-effective technique as it prioritized overflow structures needing special attention in a highly urbanized watershed, where the same CSOs were deterministically rated as having the same risk level. The results also demonstrated the effectiveness of the Bayesian model in addressing data gaps faced by water managers and stakeholders. The Bayesian model proved capable of assessing risks with uncertainties for CSOs, even with limited input data available. These findings can assist managers in identifying problematic structures by considering various scenarios, unlike the deterministic approach, which left almost half (n = 42) of the study site's overflow structures unassessed due to data limitations.

Mass spectrometry imaging (MSI) has emerged as a rapidly expanding field in the MS community. The analysis of large spectral data is further complicated by the added spatial dimension of MSI. A plethora of resources exist for expert users to begin parsing MSI data in R, but there is a critical lack of guidance for absolute beginners. This tutorial is designed to serve as a one-stop guide to start using R with MSI data and describe the possibilities that data science can bring to MSI analysis.

In this data article, we present the dataset from the RNA-Seq analysis of subcutaneous adipose tissue collected from 5 healthy normal weight women (NW, age 37 ± 6.7 years, BMI 24.3 ± 0.9 kg/m2) and 5 obese women (OBF, age 41 ± 12.5 years, BMI 38.2 ± 4.6 kg/m2). Raw data obtained from Illumina NextSeq 500 sequencer were processed through BlueBee® Genomics Platform while differential expression analysis was performed with the DESeq2 R package and deposited in the GEO public repository with GSE166047 as accession number. Specifically, 20 samples divided between NW (control), OBF (obese women), OBM (obese male) and OBT2D (obese women with diabetes) are deposited in the GSE166047. We hereby describe only 10 samples (5 healthy normal weight women reported as NW and 5 obese women reported as OBF) because we refer to the data published in the article “Transcriptional characterization of Subcutaneous Adipose Tissue in obesity affected women highlights metabolic dysfunction and implications for lncRNAs” (DOI: 10.1016/j.ygeno.2021.09.014). Pathways analyses were performed on g:Profiler, Enrichr, ClueGO and GSEA to gain biological insights on gene expression. Raw data reported in GEO database along with detailed methods description reported in this data article could be reused for comparisons with other datasets on the topic to obtain transcriptional differences in a wider co-hort. Moreover, detailed pathways analysis along with cross-referenced data with other datasets will allow to identify novel dysregulated pathways and genes responsible for this regulation. The biological interpretation of this dataset, along with related in vitro experiments, is reported by Rey et al., in Genomics (DOI: 10.1016/j.ygeno.2021.09.014).