1. Disentangling the role of virus infectiousness and awareness-based human behavior during the early phase of the COVID-19 pandemic in the European Union
- Author
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Capistrán Ocampo, Marcos Aurelio, Infante Del Río, Juan Antonio, Ramos Del Olmo, Ángel Manuel, Rey Cabezas, José María, Capistrán Ocampo, Marcos Aurelio, Infante Del Río, Juan Antonio, Ramos Del Olmo, Ángel Manuel, and Rey Cabezas, José María
- Abstract
In this work, we manage to disentangle the role of virus infectiousness and awarenessbased human behavior in the COVID-19 pandemic. Using Bayesian inference, we quantify the uncertainty of a state-space model whose propagator is based on an unusual SEIRtype model since it incorporates the effective population fraction as a parameter. Within the Markov Chain Monte Carlo (MCMC) algorithm, Unscented Kalman Filter (UKF) may be used to evaluate the likelihood approximately. UKF is a suitable strategy in many cases, but it is not well-suited to deal with non-negativity restrictions on the state variables. To overcome this difficulty, we modify the UKF, conveniently truncating Gaussian distributions, which allows us to deal with such restrictions. We use official infection notification records to analyze the first 22 weeks of infection spread in each of the 27 countries of the European Union (EU). It is known that such records are the primary source of information to assess the early evolution of the pandemic and, at the same time, usually suffer underreporting and backlogs. Our model explicitly accounts for uncertainty in the dynamic model parameters, the dynamic model adequacy, and the infection observation process. We argue that this modeling paradigm allows us to disentangle the role of the contact rate, the effective population fraction, and the infection observation probability across time and space with an imperfect first principles model. Our findings agree with phylogenetic evidence showing little variability in the contact rate, or virus infectiousness, across EU countries during the early phase of the pandemic, highlighting the advantage of incorporating the effective population fraction into pandemic modeling for heterogeneity in both human behavior and reporting. Finally, to evaluate the consistency of our data assimilation method, we performed a forecast that adequately fits the actual data. Statement of significance: Data-driven and model-based epidemiologic, Ministerio de Ciencia e Innovación, Depto. de Análisis Matemático y Matemática Aplicada, Fac. de Ciencias Matemáticas, Instituto de Matemática Interdisciplinar (IMI), TRUE, pub
- Published
- 2023