4 results on '"Sieber, Matthias"'
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2. Trace metal and nutrient dynamics across broad biogeochemical gradients in the Indian and Pacific sectors of the Southern Ocean
- Author
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Janssen, David J., Sieber, Matthias, Ellwood, Michael J., Conway, Tim M., Barrett, Pamela M., Chen, Xiaoyu, De Souza, Gregory F., Hassler, Christel S., and Jaccard, Samuel L.
- Subjects
13. Climate action ,550 Earth sciences & geology ,14. Life underwater ,15. Life on land - Abstract
The Southern Ocean is the largest high-nutrient low-chlorophyll environment in the global ocean, and represents an important source of intermediate and deep waters to lower latitudes. Constraining Southern Ocean trace metal biogeochemical cycling is therefore important not just for understanding biological productivity and carbon cycling regionally, but also for understanding trace metal distributions throughout the lower latitude oceans. We present dissolved Fe, Ni, Cu, Zn, Cd, Pb and macronutrient concentrations in the Indian and Pacific sectors of the Southern Ocean from the Antarctic Circumnavigation Expedition (austral summer 2016-17), which included the first opportunities to study trace metal cycling at the Mertz Glacier Polynya and the Balleny Islands, as well as two meridional cross-frontal transects. Dissolved Ni, Cu, Zn, Cd and macronutrient concentrations show similar or greater variability latitudinally within surface waters than vertically through the water column, reflecting the combined influence of circulation and biological drawdown in shaping the distributions of nutrient-type elements in the Southern Ocean. Slopes of Cu-Si(OH)4 and Cd-PO4 increase from the Polar Frontal Zone to south of the Southern ACC Boundary (Cu-Si(OH)4) and from the Subantarctic Zone to the Antarctic Zone (Cd-PO4). Latitudinal differences are also observed for Ni-Si(OH)4 and Zn-PO4, with distinct Subantarctic Zone trends relative to those south of the Polar Front. Similarities between our Zn-Si(OH)4 and Cd-PO4 correlations and global compilations reflect the importance of exported Southern Ocean waters in setting these metal-macronutrient couples globally. Distinct Ni-macronutrient correlations are observed in this dataset relative to the global ocean, which supports a distinct cycling of Ni in the Southern Ocean compared to other basins. Concentrations of Pb are among the lowest observed in the global ocean; however, a local maximum is seen along the density level corresponding with Antarctic Intermediate Water. Concentrations within this isopycnal decrease with increasing latitude, which can be explained by decreasing atmospheric Pb input to more recently subducted waters. Substantial biological uptake of metals and macronutrients is observed at the Mertz Glacier Polynya. Here, inferred metal:macronutrient uptake ratios are comparable to those found in the Amundsen Sea Polynya, in Southern Ocean phytoplankton, and to metal-macronutrient correlations in our data set as a whole, highlighting the potential of Southern Ocean polynyas as natural systems for trace metal uptake and export studies. The Balleny Islands are a source of Fe to surface waters and the islands also appear to influence distributions of Zn, Cu and macronutrients, which may reflect the combined impact of Fe supply on biological uptake, mixing, and scavenging in deeper waters. The Kerguelen Plateau is also a source of Fe, as previously identified. Throughout our dataset, the ferricline is found deeper than the nitricline, in agreement with existing data and indicating that Fe is less easily entrained into the surface ocean than NO3. Additionally, Fe:NO3 ratios in most samples throughout the water column are Fe-limiting (
3. Age-specific transcriptional response to stroke.
- Author
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Sieber MW, Guenther M, Jaenisch N, Albrecht-Eckardt D, Kohl M, Witte OW, and Frahm C
- Subjects
- Aging immunology, Animals, Brain immunology, Brain physiopathology, Cell Cycle genetics, DNA Repair genetics, Depressive Disorder genetics, Disease Models, Animal, Gene Expression Regulation, Developmental genetics, Genetic Predisposition to Disease, Humans, Inflammation genetics, Male, Mice, Mice, Inbred C57BL, Molecular Targeted Therapy, Nerve Regeneration, Neuronal Plasticity genetics, Oxidative Stress genetics, Risk Factors, Stroke drug therapy, Stroke physiopathology, Synapses physiology, Aging genetics, Stroke genetics, Transcription, Genetic genetics
- Abstract
Increased age is a major risk factor for stroke incidence and post-ischemic mortality. To develop age-adjusted therapeutic interventions, a clear understanding of the complexity of age-related post-ischemic mechanisms is essential. Transient occlusion of the middle cerebral artery--a model that closely resembles human stroke--was used to induce cerebral infarction in mice of 4 different ages (2, 9, 15, 24 months). By using Illumina cDNA microarrays and quantitative PCR we detected a distinct age-dependent response to stroke involving 350 differentially expressed genes. Our analyses also identified 327 differentially expressed genes that responded to stroke in an age-independent manner. These genes are involved in different aspects of the inflammatory and immune response, oxidative stress, cell cycle activation and/or DNA repair, apoptosis, cytoskeleton reorganization and/or astrogliosis, synaptic plasticity and/or neurotransmission, and depressive disorders and/or dopamine-, serotonin-, GABA-signaling. In agreement with our earlier work, aged brains displayed an attenuated inflammatory and immune response (Sieber et al., 2011) and a reduced impairment of post-stroke synaptic plasticity. Our data also revealed a distinct age-related susceptibility for post-ischemic depression, the most common neuropsychiatric consequence of stroke, which has a major influence on functional outcome., (Copyright © 2014 Elsevier Inc. All rights reserved.)
- Published
- 2014
- Full Text
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4. Substantial performance discrepancies among commercially available kits for reverse transcription quantitative polymerase chain reaction: a systematic comparative investigator-driven approach.
- Author
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Sieber MW, Recknagel P, Glaser F, Witte OW, Bauer M, Claus RA, and Frahm C
- Subjects
- Animals, DNA, Complementary chemical synthesis, Humans, Mice, Rats, Reproducibility of Results, Reverse Transcriptase Polymerase Chain Reaction methods
- Abstract
Reverse transcription followed by quantitative polymerase chain reaction (rt-qPCR) has become the state-of-the-art tool for quantification of nucleic acids. However, there are still significant problems associated with its sensitivity, reproducibility, and efficiency and the choice of an appropriate rt-qPCR kit. The purpose of this article is to give insights into strategies to optimize and validate the performance of currently available kits for rt-qPCR and to provide up-to-date information about the benefits, potentials, and pitfalls of rt-qPCR assays. A selection of 9 complementary DNA (cDNA) synthesis and 12 qPCR kits were tested using samples obtained from three species (mouse, rat, and human) and three transcripts (Gapdh, Actb, and Hmbs) under highly standardized conditions. Kits with outstanding performance were further analyzed to identify the dynamic range for a reliable quantification of messenger RNA (mRNA). Reverse transcription efficiency varied up to 90-fold depending on the choice of reverse transcriptase, priming strategy, and assay volume. The qPCR kit test revealed variations in mean relative amplification efficiency ranging from 54% to 171%. We conclude that currently available kits for rt-qPCR vary considerably. However, with an appropriate validation strategy and knowledge about capabilities of a particular kit, sensitivity, efficiency, and reliability could be improved significantly., (Copyright (c) 2010 Elsevier Inc. All rights reserved.)
- Published
- 2010
- Full Text
- View/download PDF
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