1. Active maintenance of CD8+T cell naivety through regulation of global genome architecture
- Author
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Russ, BE, Barugahare, A, Dakle, P, Tsyganov, K, Quon, S, Yu, B, Li, J, Lee, JKC, Olshansky, M, He, Z, Harrison, PF, See, M, Nussing, S, Morey, AE, Udupa, VA, Bennett, TJ, Kallies, A, Murre, C, Collas, P, Powell, D, Goldrath, AW, Turner, SJ, Russ, BE, Barugahare, A, Dakle, P, Tsyganov, K, Quon, S, Yu, B, Li, J, Lee, JKC, Olshansky, M, He, Z, Harrison, PF, See, M, Nussing, S, Morey, AE, Udupa, VA, Bennett, TJ, Kallies, A, Murre, C, Collas, P, Powell, D, Goldrath, AW, and Turner, SJ
- Abstract
The differentiation of naive CD8+ T lymphocytes into cytotoxic effector and memory CTL results in large-scale changes in transcriptional and phenotypic profiles. Little is known about how large-scale changes in genome organization underpin these transcriptional programs. We use Hi-C to map changes in the spatial organization of long-range genome contacts within naive, effector, and memory virus-specific CD8+ T cells. We observe that the architecture of the naive CD8+ T cell genome is distinct from effector and memory genome configurations, with extensive changes within discrete functional chromatin domains associated with effector/memory differentiation. Deletion of BACH2, or to a lesser extent, reducing SATB1 DNA binding, within naive CD8+ T cells results in a chromatin architecture more reminiscent of effector/memory states. This suggests that key transcription factors within naive CD8+ T cells act to restrain T cell differentiation by actively enforcing a unique naive chromatin state.
- Published
- 2023