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The Varaždin aquifer is the only source of drinking water for inhabitants of the Varaždin County. In the last decades, groundwater contamination with nitrate has become an increasing problem. Therefore, there is a need to define the origin of nitrate as the first step in groundwater remediation. The data in this article consist of δ 18 O and δ 15 N values in nitrate in groundwater, and δ 15 N in solid matter. Groundwater was sampled in the period from April 2018 to December 2019 at 10 different sites by pumping the wells, and directly in the gravel pit in Šijanec. Representative solid samples of plants, soil, manure, and synthetic fertilizers were collected from arable land in two field campaigns (July and October 2019). The presented dataset can be used as a baseline for identification of nitrate sources in groundwater and possible nitrate attenuation processes. The data is related to the research article "Tracking the nitrogen cycle in a vulnerable alluvial system using a multi proxy approach: case study Varaždin alluvial aquifer, Croatia." [1]., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships which have, or could be perceived to have, influenced the work reported in this article., (© 2022 The Author(s).)

The dataset in this article consists of one year of monthly observations of water stable isotopes in precipitation (July 2019 - May 2020). The samples were collected by rain gauge installed in the Hrašćica village in the Varaždin area, NW Croatia. The data presented in the article are raw isotope data of precipitation supplemented by calculated d-excess values, and local meteoric water lines (LMWL). The measured data is an extension to previous two year investigations (June 2017 - June 2019), which was published in the research article "Application of Stable Water Isotopes to Improve Conceptual Model of Alluvial Aquifer in the Varaždin Area" [1]. Local meteoric water lines (LMWL) are calculated for the entire period for which isotope analyses exist (June 2017 - May 2020). Presented data can be used as a background for investigation of precipitation, groundwater and surface water origin and their interrelationships., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships which have, or could be perceived to have, influenced the work reported in this article., (© 2020 The Author(s).)