11 results on '"Ali, Ashfaq"'
Search Results
2. Stratification of type 2 diabetes based on routine clinical markers
- Author
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Safai, Narges, Ali, Ashfaq, Rossing, Peter, and Ridderstråle, Martin
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- 2018
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3. Exploring the therapeutic potential of benzothiazine-pyrazole hybrid molecules against alpha-glucosidase: Pharmacological and molecular modelling based approach.
- Author
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Taj, Saman, Ahmad, Matloob, Alshammari, Abdulrahman, Alghamdi, Abdullah, and Ali Ashfaq, Usman
- Abstract
Diabetes mellitus (DM) is a metabolic disorder and a significant health problem all over the world. The current study elucidates the inhibitory potentials of the benzothiazine-pyrazole hybrid series against the α-Glucosidase enzyme. The molecular docking was employed to determine the binding affinity of synthetic compounds (ligands) with α-Glucosidase enzyme (receptor) active sites via the molecular operating environment (MOE). The molecular docking analysis revealed the best inhibitory interaction between certain synthetic compounds and the enzyme's active sites (α-Glucosidase). These compounds were further examined for drug-like properties, which necessarily validate the use of the compound as a drug. Then selected compounds were subjected to in vitro analysis to find the inhibitory potential with minimal dose. All compounds were docked into the active sites with the best binding pose and low rmsd values. The anti-diabetic analysis revealed that compound ST3 is more active against α-Glucosidase with IC 50 values 5.8 µM as compared to acarbose which is 58.8 µM. The present study exhibited compound 2c has a high proficiency in lowering blood glucose levels compared to acarbose. This study strengthened the scope of designing/synthesizing these benzothiazine-pyrazole hybrid molecules as anti-diabetic drug molecules in the pharmaceutical industry. [ABSTRACT FROM AUTHOR]
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- 2022
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4. Identifying key genes and screening therapeutic agents associated with diabetes mellitus and HCV-related hepatocellular carcinoma by bioinformatics analysis.
- Author
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Sufyan, Muhammad, Ali Ashfaq, Usman, Ahmad, Sajjad, Noor, Fatima, Hamzah Saleem, Muhammad, Farhan Aslam, Muhammad, El-Serehy, Hamed A., and Aslam, Sidra
- Abstract
[Display omitted] Incidence of both Type 2 diabetes mellitus (T2DM) and hepatocellular carcinoma (HCC) are rapidly increasing worldwide. One of the leading causes of HCC is hepatitis C virus (HCV), which is a resource of blood-borne viral infection. HCV increases the risk for HCC probably by promoting fibrosis and cirrhosis. Association among T2DM and HCV related HCC remains significant, indicating that such association is clinically reliable and robust. Lawson was the first who uncovered HCC in person suffered from T2DM. Until now, genetic association between HCV related HCC and T2DM is poorly known. Current work was designed to figure out the molecular mechanisms of both diseases by identifying the hub genes and therapeutic drugs using integrated bioinformatics analysis. Four microarray datasets were downloaded from GEO database and analyzed using R in order to obtain different expressed genes (DEGs). Protein–protein interaction (PPI) networks was constructed using STRING tool and visualized by Cytoscape. Moreover, hub genes were identified on the basis of their degree of connectivity. Finally, Networkanalyst and DGIdb were used for the identification of transcription factors (TFs) and selection of candidate drugs, respectively. A total of 53 DEGs were identified, of which 41 were upregulated genes and 12 were downregulated genes. PPI network obtained from STRING were subjected to Cytoscape plugin cytoHubba, and top 10 genes (AURKA, JUN, AR, MELK, NCOA2, CENPF, NCAPG, PCK1, RAD51AP1, and GTSE1) were chosen as the target hub genes based on the highest degree of connectivity. Furthermore, 47 drugs of AURKA, JUN, AR, MELK, and NCOA2 were found having therapeutic potential to treat HCV-HCC in patients with T2DM. This study updates the information and yield a new perspective in context of understanding the pathogenesis and development of HCV related HCC in affected persons with T2DM. In vivo and in vitro investigation of hub genes and pathway interaction is essential to delineate the specific roles of the novel hub genes, which may help to reveal the genetic association between HCV-HCC and T2DM. In future, hub genes along with their candidate drugs might be capable of improving the personalized detection and therapies for both diseases. [ABSTRACT FROM AUTHOR]
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- 2021
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5. A multi-species comparison of selective placement patterns of ramets in invasive alien and native clonal plants to light, soil nutrient and water heterogeneity.
- Author
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Chen, Duo, Ali, Ashfaq, Yong, Xiao-Hui, Lin, Chang-Gen, Niu, Xiao-Hui, Cai, Ai-Ming, Dong, Bi-Cheng, Zhou, Zhi-Xiang, Wang, Yong-Jian, and Yu, Fei-Hai
- Abstract
Abstract A worth noticing pattern in current invasive biology is the clonal ability of many of the world's worst invasive plants. Selective placement of ramets (i.e. foraging behavior) can intensify ramet performance and allocation, and place more ramets in the more favorable microhabitats, which can maximum utilize resource and share risk in heterogeneous environments. Still little is known about whether invasive alien and native clonal plants differ in the selective placement patterns of ramets in invasive clonal plants or not. We used five congeneric pairs of naturally co-occurring invasive alien and native clonal plant species in China. In a glasshouse, we grew all species in pots under a homogeneous and three heterogeneous conditions (i.e. light, soil nutrients or water) subjected to resource-high or -low patches. All biomass parameters and number of ramets significantly increased in resource-high patches in all three types of heterogeneous environments. Interestingly, growth of invasive alien plants benefited significantly more from resource-high patches than native plants in all heterogeneous environments. Overall, invasive had higher biomass parameters per ramet than natives. Ramet parameters of invasive plants also benefited more from resource-low patches than natives. Three different selective placement patterns of ramets in resource-low patches were exhibited in invasive plants: ramet increasing shoot investment (above pattern), increasing root investment (below pattern) and increasing both investments (complete pattern) in the light, soil water and nutrient heterogeneity, respectively. Investment on less, larger ramet was the adaptive strategy of invasive plants in resource-poor patches. The results suggest that adaptively selective placement patterns of ramets promote a higher morphology plasticity and performance in invasive clonal plants over natives. When alien clonal plants spread new areas with light, soil nutrients or water heterogeneity, selective placement patterns of ramets might play an important role in plant performance and competitive superior by capitalizing more on additional resources. Graphical abstract Unlabelled Image Highlights • Selective replacement of ramets in clonal plants can maximum utilize resource and share risk in heterogeneous environments. • Invasives benefit more from resource-high and resource-low patches than natives in all heterogeneous environments. • Selective placement patterns promote higher morphological plasticity and performance for invasives than natives. • Selective placement patterns of ramets might play important role in alien clonal plant performance and competitive superior. [ABSTRACT FROM AUTHOR]
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- 2019
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6. Molecular mechanism of Ferula asafoetida for the treatment of asthma: Network pharmacology and molecular docking approach.
- Author
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Qasim, Muhammad, Abdullah, Muhammad, Ali Ashfaq, Usman, Noor, Fatima, Nahid, Nazia, Alzamami, Ahmad, Alturki, Norah A, and Khurshid, Mohsin
- Abstract
Asthma is a significant health-care burden that has great impact on the quality of life of patients and their families. The limited amount of previously reported data and complicated pathophysiology of asthma make it a difficult to treat and significant economic burden on public healthcare systems. Ferula asafoetida is an herbaceous, monoecious, perennial plant of the Umbelliferae family. In Asia, F. asafoetida is used to treat a range of diseases and disorders, including asthma. Several in vitro studies demonstrated the therapeutic efficacy of F. asafoetida against asthma. Nevertheless, the precise molecular mechanism is yet to be discovered. In the framework of current study, network pharmacology approach was used to identify the bioactive compounds of F. asafoetida in order to better understand its molecular mechanism for the treatment of asthma. In present work, we explored a compound-target-pathway network and discovered that assafoetidin, cynaroside, farnesiferol-B, farnesiferol-C, galbanic-acid, and luteolin significantly influenced the development of asthma by targeting MAPK3, AKT1 and TNF genes. Later, docking analysis revealed that active constituents of F. asafoetida bind stably with three target proteins and function as asthma repressor by regulating the expression of MAPK3, AKT1 and TNF genes. Thus, integration of network pharmacology with molecular docking revealed that F. asafoetida prevent asthma by modulating asthma-related signaling pathways. This study lays the basis for establishing the efficacy of multi-component, multi-target compound formulae, as well as investigating new therapeutic targets for asthma. [ABSTRACT FROM AUTHOR]
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- 2023
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7. New therapeutic approaches in myelodysplastic syndromes: Hypomethylating agents and lenalidomide.
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Loiseau, Clémence, Ali, Ashfaq, and Itzykson, Raphael
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MYELODYSPLASTIC syndromes treatment , *METHYLATION , *AZACITIDINE , *IMMUNOLOGICAL adjuvants , *RANDOMIZED controlled trials , *THERAPEUTICS - Abstract
Recent advances in the treatment of myelodysplastic syndromes have come from the use of the hypomethylating agents decitabine and azacitidine as well as the immunomodulatory drug lenalidomide. Their clinical benefit has been demonstrated by randomized phase III clinical trials, mostly in high-risk and del(5q) myelodysplastic syndromes, respectively. Neither drug, however, appears to eradicate myelodysplastic stem cells, and thus they currently do not represent curative options. Here, we review data from both clinical and translational research on those drugs to identify their molecular and cellular mechanisms of action and to delineate paths for improved treatment allocation and further therapeutic advances in myelodysplastic syndromes. [ABSTRACT FROM AUTHOR]
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- 2015
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8. Regulation of micro-RNA, epigenetic factor by natural products for the treatment of cancers: Mechanistic insight and translational association.
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Javaid, Anam, Zahra, Duaa, Rashid, Fatima, Mashraqi, Mutaib, Alzamami, Ahmad, Khurshid, Mohsin, and Ali Ashfaq, Usman
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From onset to progression, cancer is a ailment that might take years to grow. All common epithelial malignancies, have a long latency period, frequently 20 years or more, different gene may contain uncountable mutations if they are clinically detectable. MicroRNAs (miRNAs) are around 22nt non-coding RNAs that control gene expression sequence-specifically through translational inhibition or messenger degradation of RNA (mRNA). Epigenetic processes of miRNA control genetic variants through genomic DNA methylation, post-translation histone modification, rework of the chromatin, and microRNAs. The field of miRNAs has opened a new era in understanding small non-coding RNAs since discovering their fundamental mechanisms of action. MiRNAs have been found in viruses, plants, and animals through molecular cloning and bioinformatics approaches. Phytochemicals can invert the epigenetic aberrations, a leading cause of the cancers of various organs, and act as an inhibitor of these changes. The advantage of phytochemicals is that they only function on cells that cause cancer without affecting normal cells. Phytochemicals appear to play a significant character in modulating miRNA expression, which is linked to variations in oncogenes, tumor suppressors, and cancer-derived protein production, according to several studies. In addition to standard anti-oxidant or anti-inflammatory properties, the initial epigenetic changes associated with cancer prevention may be modulated by many polyphenols. In correlation with miRNA and epigenetic factors to treat cancer some of the phytochemicals, including polyphenols, curcumin, resveratrol, indole-3-carbinol are studied in this article. [ABSTRACT FROM AUTHOR]
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- 2022
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9. Impaired hepatic lipid synthesis from polyunsaturated fatty acids in TM6SF2 E167K variant carriers with NAFLD.
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Luukkonen, Panu K., Zhou, You, Nidhina Haridas, P.A., Dwivedi, Om P., Hyötyläinen, Tuulia, Ali, Ashfaq, Juuti, Anne, Leivonen, Marja, Tukiainen, Taru, Ahonen, Linda, Scott, Emma, Palmer, Jeremy M., Arola, Johanna, Orho-Melander, Marju, Vikman, Petter, Anstee, Quentin M., Olkkonen, Vesa M., Orešič, Matej, Groop, Leif, and Yki-Järvinen, Hannele
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FATTY liver , *HYPERTRIGLYCERIDEMIA , *CARDIOVASCULAR diseases risk factors , *LECITHIN metabolism , *PHYSIOLOGICAL effects of unsaturated fatty acids , *DIAGNOSIS , *DISEASE risk factors - Abstract
Background Carriers of the transmembrane 6 superfamily member 2 E167K gene variant (TM6SF2 EK/KK ) have decreased expression of the TM6SF2 gene and increased risk of NAFLD and NASH. Unlike common ‘obese/metabolic’ NAFLD, these subjects lack hypertriglyceridemia and have lower risk of cardiovascular disease. In animals, phosphatidylcholine (PC) deficiency results in a similar phenotype. PCs surround the core of VLDL consisting of triglycerides (TGs) and cholesteryl-esters (CEs). We determined the effect of the TM6SF2 E167K on these lipids in the human liver and serum and on hepatic gene expression and studied the effect of TM6SF2 knockdown on hepatocyte handling of these lipids. Methods Liver biopsies were taken from subjects characterized with respect to the TM6SF2 genotype, serum and liver lipidome, gene expression and histology. In vitro , after TM6SF2 knockdown in HuH-7 cells, we compared incorporation of different fatty acids into TGs, CEs, and PCs. Results The TM6SF2 EK/KK and TM6SF2 EE groups had similar age, gender, BMI and HOMA-IR. Liver TGs and CEs were higher and liver PCs lower in the TM6SF2 EK/KK than the TM6SF2 EE group ( p <0.05). Polyunsaturated fatty acids (PUFA) were deficient in liver and serum TGs and liver PCs but hepatic free fatty acids were relatively enriched in PUFA ( p <0.05). Incorporation of PUFA into TGs and PCs in TM6SF2 knockdown hepatocytes was decreased ( p <0.05). Hepatic expression of TM6SF2 was decreased in variant carriers, and was co-expressed with genes regulated by PUFAs. Conclusions Hepatic lipid synthesis from PUFAs is impaired and could contribute to deficiency in PCs and increased intrahepatic TG in TM6SF2 E167K variant carriers. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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10. Adaptation of functional traits and their plasticity of three ornamental trees growing in urban environment.
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Ilyas, Muhammad, Liu, Yuan-Yuan, Shah, Sakhawat, Ali, Ashfaq, Khan, Aamir Hamid, Zaman, Fawad, Yucui, Zhang, Saud, Shah, Adnan, Muhammad, Ahmed, Nazeer, Ali, Bennish, Fahad, Shah, and Wang, Yong Jian
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ORNAMENTAL trees , *URBAN trees , *ORNAMENTAL plants , *URBANIZATION , *LEAF anatomy , *URBAN agriculture - Abstract
• Ornamental trees increased leaf and stomatal traits in urbanized and air polluted locations. • Changes in the functional traits can occur in ornamental trees as a plant strategy to cope against stresses. • Stomatal traits are good bio-indicators for urban habitat quality assessment. Ornamental plant trees possess multiple ecosystem roles, retain ambient quality and have pleasant landscape effects, whereas urbanization also induce many environmental changes compared with rural areas and these changes affect the plants leaf functional traits. In response to these stresses, functional traits of plants may change. Here, we studied leaf functional traits and plasticity for three ornamental species growing under various levels of urban environment stresses. The results showed that leaf and stomatal traits varied between trees growing under different environment stresses. For all three species, as environment stresses increased, LT (leaf thickness), SLI (single leaf area), FAA (fluctuating asymmetry based on leaf area) and FAW (fluctuating asymmetry based on leaf width) decreased. Spatial distribution maps for SLA (specific leaf area) showed a high spatial variation, corresponding with the level of urbanization. These results suggest that stomatal traits of ornamentals tree species may potentially be used as indicators for urban habitat quality. [Display omitted] [ABSTRACT FROM AUTHOR]
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- 2021
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11. BET inhibitors impair leukemic stem cell function only in defined oncogenic subgroups of acute myeloid leukaemias.
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Massé, Aline, Roulin, Louise, Pasanisi, Justine, Penneroux, Justine, Gachet, Stéphanie, Delord, Marc, Ali, Ashfaq, Alberdi, Antonio, Berrou, Jeannig, Passet, Marie, Hernandez, Lucie, Quentin, Samuel, Gardin, Claude, Raffoux, Emmanuel, Adès, Lionel, Braun, Thorsten, Soulier, Jean, Clappier, Emmanuelle, Dombret, Hervé, and Puissant, Alexandre
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CELL physiology , *STEM cells , *LEUKEMIA , *GENE fusion , *GAMBLING - Abstract
Bromodomain and Extra-Terminal inhibitors (BETi) such as OTX015 are active in Acute Myeloid Leukaemias (AML). Their activity on Leukemic Stem Cells (LSCs) is less documented. We interrogated the anti-LSC activity of OTX015 in a niche-like long-term culture in 26 primary AML samples and validated our findings in vivo. OTX015 impaired LSCs in AMLs harbouring Core Binding Factor or KMT2A gene fusions, NPM1 or chromatin/spliceosome genes mutations, but not in those with aneuploidy/TP53 mutations. In four patients, we dissected the transcriptomic footprint of Bet inhibition on LSCs versus blasts. Our results can instruct future clinical trials of BETi in AML. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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