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A gluconeogenic precursor is a biochemical compound acted on by a gluconeogenic pathway enabling the net synthesis of glucose. Recognized gluconeogenic precursors in fasting placental mammals include glycerol, lactate/pyruvate, certain amino acids, and odd-chain length fatty acids. Each of these precursors is capable of contributing net amounts of carbon to glucose synthesis via the tricarboxylic acid cycle (TCA cycle) because they are anaplerotic, that is, they are able to increase the pools of TCA cycle intermediates by the contribution of more carbon than is lost via carbon dioxide. The net synthesis of glucose from even-chain length fatty acids (ECFAs) in fasting placental mammals, via the TCA cycle alone, is not possible because equal amounts of carbon are lost via carbon dioxide as is contributed from fatty acid oxidation via acetyl-CoA. Therefore, ECFAs do not meet the criteria to be recognized as a gluconeogenic precursor via the TCA cycle alone. ECFAs are gluconeogenic precursors in organisms with a functioning glyoxylate cycle, which enables the net contribution of carbon to the intermediates of the TCA cycle from ECFAs and the net synthesis of glucose. The net conversion of ECFAs to glucose in fasting placental mammals via C3 metabolism of acetone may be a competent though inefficient metabolic path by which ECFA could be considered a gluconeogenic precursor. Defining a substrate as a gluconeogenic precursor requires careful articulation of the definition, organism, and physiologic conditions under consideration. [ABSTRACT FROM AUTHOR]

Soils are the largest terrestrial organic carbon pool and the largest terrestrial source of atmospheric CO 2. Non-phototrophic CO 2 fixation by microbes re-fixes and recycles CO 2 respired in soils. Our previous study showed that in temperate deciduous forest soil profiles, rates of dark CO 2 fixation were proportional to microbial biomass, irrespective of soil depth. However, the amount and quality of organic matter entering different soil depths vary for different temperate forest types and these influence microbial communities with unknown consequences for CO 2 fixation rates. To test whether differences in the amount and quality of SOC caused by tree species affect dark CO 2 fixation rates with depth, we conducted a study using acidic soils from two forest plots from the Schorfheide-Chorin Exploratory, Germany. These soils, dominated by either beech (deciduous) or pine (coniferous) tree stands differ in their SOC content and quality. We traced the incorporation of 2% (v:v) 13C–CO 2 label into microbial biomass and estimated the CO 2 fixation rates relative to microbial biomass carbon content (in μg C g MBC−1 d−1) across the soil profiles. The rates of dark CO 2 fixation per g MBC were similar across the beech soil profiles, but significantly lower in the pine soils at the B2 and BC horizons, suggesting that while dark CO 2 fixation rates are linked to MBC in deciduous forest soils, other factors influence dark CO 2 fixation rates in coniferous forest soils. The pine subsoils had low SOC content and quality, with a microbial community enriched with heterotrophic fermenters like Chloroflexi that are predicted to have a lower potential for heterotrophic CO 2 fixation compared to the other dominant bacteria phyla. In contrast, the beech soil profiles, characterized by higher SOC inputs, featured higher fractions of copiotrophs like Proteobacteria, Acidobacteria, and Actinobacteria predicted to have high heterotrophic CO 2 fixation potential. We thus speculate that in contrast to the beech soils, lower SOC inputs in the pine subsoils affected the community composition, leading to lower CO 2 fixation rates. We further made comparisons to soils dominated by mixed deciduous trees and featuring a higher MBC and SOC content. Over this range of temperate forest soils, CO 2 fixation rates were highest in the mixed deciduous forest soils, with MBC and Shannon index (used as a proxy parameter for community composition) showing the strongest correlations with the varying CO 2 fixation rates. Our study suggests that predictions of dark CO 2 fixation rates need to consider tree-species specific or site-specific conditions, as these may alter root carbon inputs and affect microbial community composition and their metabolic CO 2 fixation potentials in soil. • Dark CO 2 fixation rates correlate with MBC in beech soil profiles. • In pine subsoils, CO 2 fixation rates per gram MBC are lower than in beech soils. • Lower rates in pine subsoils reflect distinct subsoil communities and SOC inputs. • Comparing 3 temperate forests, microbial communities control CO 2 fixation rates. • SOC & vegetation effects on the community explain their control on fixation rates. [ABSTRACT FROM AUTHOR]

Our aim in this commentary is to provide evidence that certain oxoacids formed in anaplerotic reactions control cell proliferation/apoptosis. In tumour cells with impaired Krebs cycle enzymes, some anaplerotic reactions do compensate for the deficit in oxoacids. One of these, oxaloacetate, derived from the transamination of asparagine but not of aspartate, is decarboxylated 4-fold more efficiently in polyoma-virus transformed cells than in their non-transformed counterparts. The deamidation of asparagine, in the cell culture medium, to aspartate by asparaginase decreases asparagine transamination and inhibits concomitantly the growth of asparaginase-sensitive lymphoma cells, suggesting a causal relationship between asparagine transamination and growth. Another oxoacid that can provide ATP when metabolised in mitochondria, but by the branched-chain oxoacid dehydrogenase complex (BCOADC), is 2-oxobutanoate. It has two origins: (a) deamination of threonine, and (b) cleavage of cystathionine, a metabolite derived from methionine. 2-Oxobutanoate in the presence of insulin promotes growth in G1/S arrested cells. But methionine also gives rise to another substrate of BCOADC, 4-methylthio-2-oxobutanoate (MTOB), which is synthesised exclusively from methylthioadenosine (MTA) by the action of MTA phosphorylase. In Met-dependent tumour cells with defective MTA phosphorylase, 2-oxobutanoate production would exceed that of MTOB. Further, BCOADC also has 3-fold greater affinity for 2-oxobutanoate than for MTOB; hence, the deficiency in 3-methylthio propionyl CoA, the final product of MTOB decarboxylation, would be exacerbated. Methional, the transient metabolic precursor in 3-methylthio propionyl CoA biosynthesis, is apoptogenic for both normal and bcl2-negative transformed cells in culture. Investigations of other causal relationships between the genes/enzymes mediating the homeostasis of anaplerotic oxoacids and cell growth/death may be worthwhile. [Copyright &y& Elsevier]

Glycerol is an interesting alternative carbon source in industrial bioprocesses due to its higher degree of reduction per carbon atom compared to sugars. During the last few years, significant progress has been made in improving the well-known industrial platform organism Saccharomyces cerevisiae with regard to its glycerol utilization capability, particularly in synthetic medium. This provided a basis for future metabolic engineering focusing on the production of valuable chemicals from glycerol. However, profound knowledge about the central carbon catabolism in synthetic glycerol medium is a prerequisite for such incentives. As a matter of fact, the current assumptions about the actual in vivo fluxes active on glycerol as the sole carbon source have mainly been based on omics data collected in complex media or were even deduced from studies with other non-fermentable carbon sources, such as ethanol or acetate. A number of uncertainties have been identified which particularly regard the role of the glyoxylate cycle, the subcellular localization of the respective enzymes, the contributions of mitochondrial transporters and the active anaplerotic reactions under these conditions. The review scrutinizes the current knowledge, highlights the necessity to collect novel experimental data using cells growing in synthetic glycerol medium and summarizes the current state of the art with regard to the production of valuable fermentation products from a carbon source that has been considered so far as 'non-fermentable' for the yeast S. cerevisiae. [ABSTRACT FROM AUTHOR]