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• A hyperspectral data-processing framework was developed using Boruta and DNN. • Hyperspectral bands that can estimate the LNC of apple trees were explicitly identified. • Investigated the potential of phenological data to enhance apple LNC estimation. Rapid and accurate assessment of apple-tree leaf nitrogen content (LNC) plays an important role in smart orchards for accurate fertilization. Hyperspectral remote sensing technology provides a reliable, economical, and fast method to estimate LNC. However, high-dimensional spectral data contain redundant information that is irrelevant to the target parameters, necessitating the development of robust hyperspectral analysis techniques to estimate apple-tree LNC. Additionally, the role of phenological information in improving LNC estimates across multiple growth stages remains uncertain. The present study thus proposes a novel hyperspectral data-processing framework (Boruta-Iteration-DNN) to optimize estimates of apple-tree LNC and investigates the potential of phenological information to improve LNC estimates of multi-fertility apple trees. The proposed framework incorporates the Boruta feature-selection method for identifying important spectral bands and assessing how they affect model performance through iterative feature analysis. A deep neural network (DNN) regression model is then developed for LNC estimation. In addition, a widely used Pearson-DNN method is used for comparison to demonstrate the superiority of the proposed approach. Furthermore, the potential of incorporating phenological information (Day After Anthesis, DAA) into the estimation models is examined to evaluate its ability to better estimate LNC. The results demonstrate that the proposed framework not only enhances the accuracy of apple-tree LNC estimates with respect to the full-spectrum model (without DAA: validation R2 improved from 0.69 to 0.75, NRMSE reduced from 11.92 % to 9.97 %; with DAA: validation R2 improved from 0.72 to 0.79, NRMSE reduced from 11.09 % to 9.06 %), but also reduces the complexity and dimensionality of the models by eliminating 96 % of the redundant spectral bands (2015 bands). Moreover, the inferior results of the Pearson-Iteration-DNN framework further underscore the effectiveness of the Boruta method in selecting relevant spectral bands. Additionally, including the DAA phenological information enhances the accuracy of all models (the total R2 of training and validation increased by 0.05 ∼ 0.12, and the total NRMSE reduced by 1.49 % ∼ 1.93 %). These findings highlight the ability of DNN models integrated with hyperspectral data and phenological information to accurately assess LNC in apple trees, thereby offering valuable guidance to orchard management for developing precise fertilization strategies. [ABSTRACT FROM AUTHOR]

• Hyperspectral-to-image transform technique converts hyperspectral reflectance into images. • A 2D CNN architecture was proposed for leaf chlorophyll content (LCC) estimation. • An LCCNet was pre-trained based on a PROSAIL RTM dataset. • Reusing CNN layer information of LCCNet improved the soybean LCC estimation. Leaf chlorophyll content (LCC) is a distinct indicator of crop health status used to estimate nutritional stress, diseases, and pests. Thus, accurate LCC information can assist in the monitoring of crop growth. The combined use of hyperspectral and deep learning techniques (e.g., convolutional neural network [CNN] and transfer learning [TL]) can improve the performance of crop LCC estimation. We propose a hyperspectral-to-image transform (HIT) technique for converting canopy hyperspectral reflectance into 2D images. We designed a CNN architecture called LCCNet that fuses the deep and shallow features of CNNs to improve soybean LCC estimation. This study evaluated the combined use of hyperspectral remote sensing (RS), HIT, CNN, and TL techniques to estimate soybean LCC for multiple growth stages. The LCCNet was pre-trained based on a simulated dataset (n = 114,048) from the PROSAIL radiative transfer model (RTM) and used as prior knowledge for this work. The soybean canopy hyperspectral RS dataset (n = 910) was obtained using a FieldSpec 3 spectrometer. The knowledge gained while learning to estimate LCC from PROSAIL RTM was applied when estimating field soybean LCC (Dualex readings). TL was used to enhance the soybean estimation model, called the Soybean-LCCNet (RTM + HIT + CNN + TL) model. We tested the LCC (Dualex readings) estimation performance using (a) HIT + CNN, (b) LCCNet (RTM + HIT + CNN), (c) Soybean-LCCNet (RTM + HIT + CNN + TL), and (d) widely used LCC spectral features + partial least squares regression (PLSR). Four methods were ranked based on their LCC estimation performance: Soybean-LCCNet (R2 = 0.78, RMSE = 4.13 (Dualex readings)) > HIT + CNN (R2 = 0.75, RMSE = 4.41 (Dualex readings)) > PLSR-based method (R2 = 0.61, RMSE = 5.39 (Dualex readings)) > LCCNet (R2 = 0.53, RMSE = 7.11 (Dualex readings)). The main conclusions of this work are as follows: (1) HIT + CNN can provide a more robust LCC estimation performance than the widely used LCC SIs; (2) Fusing the deep and shallow features of CNNs can improve the performance of RS soybean LCC (Dualex readings) estimation; and (3) Soybean-LCCNet can reuse the CNN layer information of a pre-trained LCCNet based on a PROSAIL RTM dataset and improve the soybean LCC estimation performance. [ABSTRACT FROM AUTHOR]

• Canopy-scale chlorophyll content (CCC) estimation conducted on open-canopy orchards. • A simplified 3D radiative transfer model is coupled with PROSPECT-D model. • Vegetation indices and model inversion methods are assessed with UAV data. • Look-up table including vegetation indices can estimate CCC of ITCs from image spectroscopy. • The inversion method based on the prior knowledge provides accurate estimation of CCC. Chlorophyll content is a key trait for understanding the functioning of agroforestry ecosystems and has important implications for leaf and canopy photosynthesis. However, fine-scale monitoring of canopy chlorophyll content (CCC) of individual fruit trees is rather challenging. This study aims to use a 3D radiative transfer model (RTM) and proposes a joint inversion model based on prior knowledge to estimate the CCC of individual tree crowns (ITCs) in apple orchards. The widely recognized 3D RTM LESS (large-scale remote sensing data and image simulation framework over heterogeneous 3D scenes) was adopted for large-scale apple orchard 3D scenes radiative transfer computing and image simulation. LESS was first evaluated with unmanned aerial vehicle (UAV) multispectral imagery and the results showed that it reasonably characterized the reflectance of apple tree canopies (RMSE = 0.02). An original look-up table (LUT) with reflectance was then produced using LESS, and the final vegetation indices LUT (VI LUT) including Normalized Difference Vegetation Index (NDVI), Green Chlorophyll Index (CIgreen), Red edge Chlorophyll Index (CIred edge) and Green NDVI (GNDVI) was generated from the original LUT form VI interpolation. A physically-based joint inversion model coupling prior knowledge of leaf pigments and leaf area index (LAI) was developed to estimate the CCC of ITCs from high-resolution UAV images. The solution first used linear interpolation to produce a weighted VI LUT corresponding to the sample based on estimated LAI. Linear interpolation was then adopted to screen multiple combinations of leaf chlorophyll a+b (C ab) and leaf carotenoids (C xc) contents from the VI LUT. A prior relationship between C ab and C xc was finally used to regularize the constraints on multiple VI combinations and determine the estimation of C ab and CCC. The joint inversion model demonstrated an accurate estimation of CCC of ITCs. The model driven by GNDVI yielded the highest result for CCC estimation (R2 = 0.84, RMSE = 24.12 μg/cm2). In addition, CIgreen (R2 = 0.82, RMSE = 32.22 μg/cm2) and CIred edge (R2 = 0.81, RMSE = 34.05 μg/cm2) also achieved satisfactory results. The proposed model facilitates CCC estimation of ITCs from high-resolution imagery in heterogeneous orchard canopies, which is important for advancing the precise nutrition management of fruit trees. [ABSTRACT FROM AUTHOR]

• Potential of land surface temperature to predict flowering phenology was explored. • A spatio-temporal reconstruction approach is developed to compenstate the missing LST. • The predicted first flowering date are validated with field measurements at multiple sites. • Feasibility for generating spatially continuous information on flowering phenology. The first flowering date (FFD) is a critical phenological parameter closely related to the apple yield, so the accurate prediction of the FFD is important for precise orchard production management. Existing methods to predict the FFD are mostly based on air temperature (Ta) measured at meteorological stations, but to great differences in meteorological variations and the ecological conditions, these methods cannot present the differences of FFD under complex meteorological conditions and provide spatially continuous FFD information at the level of a region. Therefore, we propose a method to predict spatially continuous apple FFD from remote sensing land surface temperature (LST) based on flowering prediction model. Firstly, the missing LST data were reconstructed by using spatio-temporal reconstruction (STR) approach developed. Next, new air temperature (NAT) data were generated by using the daily Ta estimation (DTE) model and the reconstructed LST. Finally, apple FFD was predicted by the NAT data and the apple flowering prediction model established based on random forest (RF) algorithm and the phenology sequential model, and the prediction accuracy was verified by comparison with the independently measured apple FFD. The LST reconstructed by using the STR approach has mean absolute error (MAE) ranging from 0.51 to 0.68 °C, and root mean square error (RMSE) ranging from 1.07 to 1.21 °C. The MAE between the NAT data and the High-Resolution Land Surface Data Assimilation System (HR-CLDAS) meteorological data ranges from 2.15 to 3.23 °C, and the RMSE ranges from 2.81 to 4.27 °C. In addition, the determination coefficient (R2) and RMSE between the predicted and measured FFD is 0.72 and 2.96 days, respectively. These results demonstrate that the developed method maximizes the potential of MODIS LST in predicting spatially continuous apple FFD, which is valuable for flower and fruit thinning, to defend against frost disasters, and in general for refined orchard production management. [ABSTRACT FROM AUTHOR]

• An apple tree yield prediction model was developed by using ensemble learning. • The contribution of spectral and structural features to orchard yield was discussed. • An automatic channel was developed to extract growth characteristics. As one of the world's most popular fruit, apple tree yield prediction before harvest plays an important role in optimizing orchard nutrition management, especially at the individual tree level. However, few studies focus on fruit-tree yield prediction with remote-sensing technology whereas most of them aim at field crops. Current fruits identifying and counting methods often fail to produce the expected result due to light and occlusion in complex orchard conditions. Since both the spectral and morphological characteristics of tree canopy can reflect the growth and development of fruit trees and are directly related to its potential yield. In this study, we develop a channel for automatic extraction of spectral and morphological features of apple trees using light detection and ranging (LiDAR) and multispectral imagery data from unmanned aerial vehicles. The contribution of spectral and morphological characteristics to the yield prediction of individual apple trees is discussed. With the combination of spectral and morphological features, an ensemble machine learning yield prediction model was developed by combining two widely used basic learners: support vector regression (SVR) and K-nearest neighbor (KNN). Then through extrapolating the ensemble model, the yield map was produced at the orchard level and individual tree level, respectively. The results show that the data processing channels developed in this study can accurately extract the morphological and spectral features of individual apple trees. Three features (Crown Volume 1, Ratio Vegetation Index, and CPA1) contribute most in apple tree yield prediction. The ensemble learning model outperforms all base learners with R2 = 0.813 for the validation and 0.758 for the test when using the selected three features. This study thus provides a practical example of predicting the yield of individual apple trees based on multi-source remote-sensing data and ensemble learning. [ABSTRACT FROM AUTHOR]

• Accurately forecast the first flowering period of two typical apple producing areas in China. • It fills in the research of forecasting the first flowering period of apple from point scale to regional scale. • The phenological survey method of replacing time with space is very effective for the calibration of sequential model. • The prediction of the apple first flowering on a regional scale has important application value for optimizing orchard management. China is one of the largest apple-producing countries in the world, with large orchards and diverse climates. Accurately forecasting the first-flowering time of apple trees can assist orchard managers in their deciding when to apply anti-freeze. The temperature-driven sequential model from previous studies can be used to forecast the flowering phenology of deciduous fruit trees. However, this model requires many years of observational data for calibration, so flowering forecasts based on traditional phenological models cannot be implemented in areas that lack such historical data. To overcome this problem, the present work combines a spatial rather than a temporal phenological survey method with 1-km-gridded temperature products to calibrate the chill and heat requirement parameters of the sequential model. We then use the model to forecast the first-flowering on a regional scale for Luochuan and Linyi, which are two main apple-producing areas of China. The results show that the proposed method accurately forecasts regional flowering. The root mean squared errors (RMSE) for Luochuan and Linyi were 4.7 and 4.4 days, respectively, and the normalized RMSEs were all less than 5.19%. We expect the proposed regional first-flowering forecast method to be an important aid to optimize orchard management. [ABSTRACT FROM AUTHOR]