64 results on '"Harrison, Lee"'
Search Results
2. A decade of nature: Evolving approaches to Melbourne’s ‘nature in the city’
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Bush, Judy, Oke, Cathy, Dickey, Ariana, Humphrey, Jacinta, Harrison, Lee, Amati, Marco, Fornari, Giorgia, Soanes, Kylie, Callow, David, and Van der Ree, Rodney
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- 2023
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3. Hydrologic indicators of hot spots and hot moments of mercury methylation potential along river corridors
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Singer, Michael Bliss, Harrison, Lee R., Donovan, Patrick M., Blum, Joel D., and Marvin-DiPasquale, Mark
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- 2016
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4. Genomic Epidemiology of Hypervirulent Serogroup W, ST-11 Neisseria meningitidis
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Mustapha, Mustapha M., Marsh, Jane W., Krauland, Mary G., Fernandez, Jorge O., de Lemos, Ana Paula S., Dunning Hotopp, Julie C., Wang, Xin, Mayer, Leonard W., Lawrence, Jeffrey G., Hiller, N. Luisa, and Harrison, Lee H.
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- 2015
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5. Quantifying the role of woody debris in providing bioenergetically favorable habitat for juvenile salmon
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Hafs, Andrew W., Harrison, Lee R., Utz, Ryan M., and Dunne, Thomas
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- 2014
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6. Modeling the influence of flow on invertebrate drift across spatial scales using a 2D hydraulic model and a 1D population model
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Anderson, Kurt E., Harrison, Lee R., Nisbet, Roger M., and Kolpas, Allison
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- 2013
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7. Meningococcal disease in North America: Updates from the Global Meningococcal Initiative.
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Asturias, Edwin J., Bai, Xilian, Bettinger, Julie A., Borrow, Ray, Castillo, Delia Nais, Caugant, Dominique A., Chacon, Grettel Chanto, Dinleyici, Ener Cagri, Echaniz-Aviles, Gabriela, Garcia, Luis, Glennie, Linda, Harrison, Lee H., Howie, Rebecca L., Itsko, Mark, Lucidarme, Jay, Marin, Jose Eduardo Oliva, Marjuki, Henju, McNamara, Lucy A., Mustapha, Mustapha M., and Robinson, Joan L.
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This review summarizes the recent Global Meningococcal Initiative (GMI) regional meeting, which explored meningococcal disease in North America. Invasive meningococcal disease (IMD) cases are documented through both passive and active surveillance networks. IMD appears to be decreasing in many areas, such as the Dominican Republic (2016: 18 cases; 2021: 2 cases) and Panama (2008: 1 case/100,000; 2021: <0.1 cases/100,000); however, there is notable regional and temporal variation. Outbreaks persist in at-risk subpopulations, such as people experiencing homelessness in the US and migrants in Mexico. The recent emergence of β-lactamase-positive and ciprofloxacin-resistant meningococci in the US is a major concern. While vaccination practices vary across North America, vaccine uptake remains relatively high. Monovalent and multivalent conjugate vaccines (which many countries in North America primarily use) can provide herd protection. However, there is no evidence that group B vaccines reduce meningococcal carriage. The coronavirus pandemic illustrates that following public health crises, enhanced surveillance of disease epidemiology and catch-up vaccine schedules is key. Whole genome sequencing is a key epidemiological tool for identifying IMD strain emergence and the evaluation of vaccine strain coverage. The Global Roadmap on Defeating Meningitis by 2030 remains a focus of the GMI. [ABSTRACT FROM AUTHOR]
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- 2022
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8. Modeling forced pool–riffle hydraulics in a boulder-bed stream, southern California
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Harrison, Lee R. and Keller, Edward A.
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- 2007
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9. Global Meningococcal Initiative: Insights on antibiotic resistance, control strategies and advocacy efforts in Western Europe.
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Borrow, Ray, Campbell, Helen, Caugant, Dominique A., Cherkaoui, Abdessalam, Claus, Heike, Deghmane, Ala-Eddine, Dinleyici, Ener Cagri, Harrison, Lee H., Hausdorff, William P., Bajanca-Lavado, Paula, Levy, Corinne, Mattheus, Wesley, Mikula-Pratschke, Claudia, Mölling, Paula, Sáfadi, Marco AP, Smith, Vinny, van Sorge, Nina M., Stefanelli, Paola, Taha, Muhamed-Kheir, and Toropainen, Maija
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In Western Europe, many countries have robust and well-established surveillance systems and case reporting mechanisms. IMD incidence across Western Europe is low with a predominance of meningococcal serogroup B (MenB). Case confirmation and antimicrobial susceptibility testing is often standardised in this region, with many countries also having robust vaccination programmes in place. Both MenB and MenACWY vaccines form part of National Immunisation Programmes (NIPs) in most European countries, with Sweden only offering vaccination in special circumstances. Despite these established programmes, there remains a critical need for advocacy efforts in affecting change in diagnosis, testing, and treatment. Recent campaigns, such as the World Meningitis Day digital toolkit, have helped raise awareness and draw attention to meningococcal disease. Awareness around antibiotic resistance has also led to the identification of antibiotic-resistant meningococcal strains, with an increase, albeit small, in these strains noted across the region. Countries such as Spain, Portugal, Germany, Switzerland, and France have either reported strains resistant to penicillin, ciprofloxacin and/or isolates with a reduced susceptibility to third-generation cephalosporins. [ABSTRACT FROM AUTHOR]
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- 2024
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10. Ecological connectivity as a planning tool for the conservation of wildlife in cities
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Kirk, Holly, Soanes, Kylie, Amati, Marco, Bekessy, Sarah, Harrison, Lee, Parris, Kirsten, Ramalho, Cristina, van de Ree, Rodney, and Threlfall, Caragh
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- 2023
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11. Surveillance and control of meningococcal disease in the COVID-19 era: A Global Meningococcal Initiative review.
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Alderson, Mark R., Arkwright, Peter D., Bai, Xilian, Black, Steve, Borrow, Ray, Caugant, Dominique A., Dinleyici, Ener Cagri, Harrison, Lee H., Lucidarme, Jay, McNamara, Lucy A., Meiring, Susan, Sáfadi, Marco A.P., Shao, Zhujun, Stephens, David S., Taha, Muhamed-Kheir, Vazquez, Julio, Zhu, Bingqing, and collaborators, GMI
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This review article incorporates information from the 4th Global Meningococcal Initiative summit meeting. Since the introduction of stringent COVID-19 infection control and lockdown measures globally in 2020, there has been an impact on IMD prevalence, surveillance, and vaccination compliance. Incidence rates and associated mortality fell across various regions during 2020. A reduction in vaccine uptake during 2020 remains a concern globally. In addition, several Neisseria meningitidis clonal complexes, particularly CC4821 and CC11, continue to exhibit resistance to antibiotics, with resistance to ciprofloxacin or beta-lactams mainly linked to modifications of gyrA or penA alleles, respectively. Beta-lactamase acquisition was also reported through horizontal gene transfer (blaROB-1) involving other bacterial species. Despite the challenges over the past year, progress has also been made on meningococcal vaccine development, with several pentavalent (serogroups ABCWY and ACWYX) vaccines currently being studied in late-stage clinical trial programmes. [ABSTRACT FROM AUTHOR]
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- 2022
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12. The global meningitis genome partnership.
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Rodgers, Elizabeth, Bentley, Stephen D., Borrow, Ray, Bratcher, Holly B., Brisse, Sylvain, Brueggemann, Angela B., Caugant, Dominique A., Findlow, Jamie, Fox, LeAnne, Glennie, Linda, Harrison, Lee H., Harrison, Odile B., Heyderman, Robert S., van Rensburg, Melissa Jansen, Jolley, Keith A., Kwambana-Adams, Brenda, Ladhani, Shamez, LaForce, Marc, Levin, Michael, and Lucidarme, Jay
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Genomic surveillance of bacterial meningitis pathogens is essential for effective disease control globally, enabling identification of emerging and expanding strains and consequent public health interventions. While there has been a rise in the use of whole genome sequencing, this has been driven predominately by a subset of countries with adequate capacity and resources. Global capacity to participate in surveillance needs to be expanded, particularly in low and middle-income countries with high disease burdens. In light of this, the WHO-led collaboration, Defeating Meningitis by 2030 Global Roadmap, has called for the establishment of a Global Meningitis Genome Partnership that links resources for: N. meningitidis (Nm), S. pneumoniae (Sp), H. influenzae (Hi) and S. agalactiae (Sa) to improve worldwide co-ordination of strain identification and tracking. Existing platforms containing relevant genomes include: PubMLST: Nm (31,622), Sp (15,132), Hi (1935), Sa (9026); The Wellcome Sanger Institute: Nm (13,711), Sp (> 24,000), Sa (6200), Hi (1738); and BMGAP: Nm (8785), Hi (2030). A steering group is being established to coordinate the initiative and encourage high-quality data curation. Next steps include: developing guidelines on open-access sharing of genomic data; defining a core set of metadata; and facilitating development of user-friendly interfaces that represent publicly available data. [ABSTRACT FROM AUTHOR]
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- 2020
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13. The everchanging epidemiology of meningococcal disease worldwide and the potential for prevention through vaccination.
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Parikh, Sydel R., Campbell, Helen, Bettinger, Julie A., Harrison, Lee H., Marshall, Helen S, Martinon-Torres, Federico, Safadi, Marco Aurelio, Shao, Zhujun, Zhu, Bingqing, von Gottberg, Anne, Borrow, Ray, Ramsay, Mary E, and Ladhani, Shamez N
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Neisseria meningitidis is a major cause of bacterial meningitis and septicaemia worldwide and is associated with high case fatality rates and serious life-long complications among survivors. Twelve serogroups are recognised, of which six (A, B, C, W, X and Y) are responsible for nearly all cases of invasive meningococcal disease (IMD). The incidence of IMD and responsible serogroups vary widely both geographically and over time. For the first time, effective vaccines against all these serogroups are available or nearing licensure. Over the past two decades, IMD incidence has been declining across most parts of the world through a combination of successful meningococcal immunisation programmes and secular trends. The introduction of meningococcal C conjugate vaccines in the early 2000s was associated with rapid declines in meningococcal C disease, whilst implementation of a meningococcal A conjugate vaccine across the African meningitis belt led to near-elimination of meningococcal A disease. Consequently, other serogroups have become more important causes of IMD. In particular, the emergence of a hypervirulent meningococcal group W clone has led many countries to shift from monovalent meningococcal C to quadrivalent ACWY conjugate vaccines in their national immunisation programmes. Additionally, the recent licensure of two protein-based, broad-spectrum meningococcal B vaccines finally provides protection against the most common group responsible for childhood IMD across Europe and Australia. This review describes global IMD epidemiology across each continent and trends over time, the serogroups responsible for IMD, the impact of meningococcal immunisation programmes and future needs to eliminate this devastating disease. [ABSTRACT FROM AUTHOR]
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- 2020
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14. Population structure of invasive Neisseria meningitidis in the United States, 2011-15.
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Potts, Caelin C., Joseph, Sandeep J., Chang, How-Yi, Chen, Alexander, Vuong, Jeni, Hu, Fang, Jenkins, Laurel T., Schmink, Susanna, Blain, Amy, MacNeil, Jessica R., Harrison, Lee H., and Wang, Xin
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Objectives: Meningococcal conjugate vaccines (MenACWY) were licensed in the United States in 2005. We assessed the population structure of invasive Neisseria meningitidis (Nm) ten years after recommended use of MenACWY among adolescents.Methods: Meningococcal isolates obtained through Active Bacterial Core surveillance (ABCs) from 2000-05, 2006-10, and 2011-15 underwent whole genome or Sanger sequencing. Genome phylogenies were completed using maximum likelihood methods; and distribution of multilocus sequence typing (MLST) sequence type (ST) and clonal complex (CC), and PorA and FetA types were assessed.Results: Prevalent serogroups (B, C, Y and W), CCs, and PorA and FetA types were detected in all three time periods, but dynamic changes were observed. The proportion of serogroup W CC11 isolates increased in 2011-15 and were most related to South American strains. Changes in CC distribution were also observed in serogroup C and serogroup Y. Phylogenetic analysis showed that U.S. serogroup W CC11s are closely related to a subset of U.S. serogroup C isolates; combined global analysis demonstrated that some CCs, including CC11, exhibit regional clustering.Conclusions: Overall, the Nm population structure has remained stable after MenACWY introduction. Dynamic changes in genotypes, unlikely related to vaccination, also occurred, highlighting the need for continued whole genome-based surveillance. [ABSTRACT FROM AUTHOR]- Published
- 2018
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15. Environmental sources of community-acquired legionnaires' disease: A review.
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Orkis, Lauren T., Harrison, Lee H., Mertz, Kristen J., Brooks, Maria M., Bibby, Kyle J., and Stout, Janet E.
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LEGIONNAIRES' disease , *COMMUNITY-acquired infections , *WATER pollution , *ENVIRONMENTALLY induced diseases , *CONTAMINATION of drinking water , *AIR conditioning , *LEGIONELLA , *MICROBIAL ecology , *POLLUTANTS , *AQUATIC microbiology , *WATER supply , *INFECTIOUS disease transmission - Abstract
Background: Most Legionnaires' disease in the US and abroad is community-acquired and believed to be sporadic, or non-outbreak associated. Most patients are exposed to numerous water sources, thus making it difficult to focus environmental investigations. Identifying known sources of sporadic community-acquired Legionnaires' disease will inform future sporadic Legionnaires' disease investigations as well as highlight directions for research. The objective is to summarize and rank sporadic Legionnaires' disease sources based on the level of linkage between the environmental source and cases.Methods: A PubMed search was conducted using the search terms legion* and (origins or source or transmission) and (sporadic or community-acquired). Studies of nosocomial and/or outbreak-associated disease were excluded from this review. Definite, probable, possible and suspect ranks were assigned to sources based on evidence of linkage to sporadic Legionnaires' disease.Results: The search yielded 196 articles and 47 articles were included in the final review after application of exclusion criteria. A total of 28 sources were identified. Of these, eight were assigned definite rank including residential potable water and car air-conditioner water leakage. Probable rank was assigned to five sources including solar-heated potable water and soil. Possible rank was assigned to nine sources including residential potable water and cooling towers. Suspect rank was assigned to 20 sources including large building water systems and cooling towers.Conclusion: Residential potable water, large building water systems and car travel appear to contribute to a substantial proportion of sporadic Legionnaires' disease. Cooling towers are also a potentially significant source; however, definitive linkage to sporadic cases proves difficult. The sources of sporadic Legionnaires' disease cannot be definitively identified for most cases. [ABSTRACT FROM AUTHOR]- Published
- 2018
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16. Examining connection to nature at multiple scales provides insights for urban conservation.
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Selinske, Matthew J., Harrison, Lee, and Simmons, B. Alexander
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CITY dwellers , *COMMUNITIES , *COMMUNITY organization , *NATURE conservation , *WELL-being , *URBAN growth - Abstract
With the rapid increase in urbanization, local governments and organizations are searching for opportunities to improve the social resilience, health, and wellbeing of urban residents by increasing their connection to nature. However, these urban communities are highly heterogenous, and tailored nature engagement and conservation programs will be necessary for building nature connection across diverse segments of the population. Here, we surveyed Melbourne community members (n = 1585) to understand their connection to nature and other aspects of their relationship with nature to aid in designing and prioritizing new conservation programs across the city. We determined demographic, psychographic, and behavioral factors associated with an individual's connection to nature, characterized unique segments of the population, and identified neighborhoods with greater concentrations of residents with high and low connection to nature. Overall, we found that community members have relatively high connection to nature, are concerned about environmental issues, and frequently participate in nature-related activities. New and older Melbourne residents tend to be more connected to nature, though there is important variation within these populations. Of the six distinct types of community members we identified, students that have lived in Melbourne for most of their lives exhibited the lowest connection to nature of all other typologies. Furthermore, residents in neighborhoods south of the Yarra River are the least connected to nature. We discuss the importance of such multifaceted approaches for understanding nature connection in urban populations and outline important strategies and priorities based on individual, community, and geographic targets for conservation programming across the Greater Melbourne area. • Multifaceted approaches to understanding nature connection in urban populations can help prioritize conservation programming • We segmented community members based on their connection to nature, demographics, and behaviors • A hotspot analysis identified areas of greater concentrations of residents with high and low connection to nature • Less connected participants stated that greater access to nature would not increase their nature engagement • Students that have lived in Melbourne for most of their lives exhibited the lowest connection to nature of all typologies [ABSTRACT FROM AUTHOR]
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- 2023
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17. Escherichia coli O157:H7 Outbreak Associated with Restaurant Beef Grinding.
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TORSO, LAUREN M., VOORHEES, RONALD E., FOREST, STEPHEN A., GORDON, ANDREW Z., SILVESTRI, SHARON A., KISSLER, BONNIE, SCHLACKMAN, JESSICA, SANDT, CAROL H., TOMA, PAUL, BACHERT, JOEL, MERTZ, KRISTEN J., and HARRISON, LEE H.
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ESCHERICHIA coli O157:H7 ,FOODBORNE diseases ,PATHOGENIC microorganisms ,HAMBURGERS ,BEEF microbiology - Abstract
Escherichia coli O157:H7 is a common cause of foodborne illness in the United States. Beef ground at establishments regulated by the U.S. Department of Agriculture, Food Safety and Inspection Service is routinely tested for E. coli O157:H7. Prior to December 2013, boxed beef product (wholesale cuts of beef, such as beef loin, packaged into bags and boxed for shipping) was not always tested for this pathogen. Downstream processors or retailers may grind the product; and, if the ground beef is not cooked to the recommended temperature, pathogens on the exterior of the beef introduced to the interior through grinding may survive. On 18 October 2013, the Allegheny County Health Department identified two E. coli O157:H7 cases, both of whom were food handlers at restaurant A, a restaurant that ground locally produced boxed beef for hamburgers on site. Case finding was conducted through public messaging, employee surveys, and disease surveillance. All potential cases were interviewed using a standard questionnaire. A confirmed case was defined as laboratory-confirmed E. coli O157:H7 with exposure to restaurant A. A probable case was defined as a patient with compatible symptoms and exposure to restaurant A but without laboratory confirmation. All human and food isolates were characterized by pulsed-field gel electrophoresis and multilocus variable-number tandem repeat analysis. The analysis identified 14 confirmed and 10 probable cases of E. coli; 18 nonintact ground beef samples tested positive for E. coli O157:H7. Nine confirmed cases were restaurant A employees. All confirmed cases recalled eating a restaurant A hamburger in the 10 days before illness onset; most cases reported consuming medium to rare hamburgers. Multiple pulsed-field gel electrophoresis and multilocus variable-number tandem repeat analysis patterns were identified among both the human and ground beef isolates, and the patient isolates matched those found in ground beef samples. Restaurant A voluntarily closed for 1.5 days, changed beef suppliers, ceased grinding beef in-house, and has had no new cases since reopening. [ABSTRACT FROM AUTHOR]
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- 2015
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18. Chapter 15: Event management for the arts: a New Zealand perspective.
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Harrison, Lee and McDonald, Fiona
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Chapter 15 of the book "Festival & Events Management" is presented. The chapter focuses on managing special events for the arts in New Zealand. There is a growing industry for specialized event management professionals in the country. Various art forms in New Zealand include not only films, writing and music but also food preparation, fashion and urban design.
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- 2003
19. Neisseria meningitidis ST-11 clonal complex bearing capsule serogroups B, C, or W in Brazil.
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Barroso, David E., Castiñeiras, Terezinha M.P.P., Cabral, Adriana C., Vicente, Ana C.P., Rebelo, Maria C., Cerqueira, Elaine O., Tulenko, Mary M., Marsh, Jane W., Krauland, Mary G., and Harrison, Lee H.
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- 2013
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20. Invasive Haemophilus influenzae in the United States, 1999–2008: Epidemiology and outcomes.
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Livorsi, Daniel J., MacNeil, Jessica R., Cohn, Amanda C., Bareta, Joseph, Zansky, Shelly, Petit, Susan, Gershman, Ken, Harrison, Lee H., Lynfield, Ruth, Reingold, Arthur, Schaffner, William, Thomas, Ann, and Farley, Monica M.
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HAEMOPHILUS influenzae ,EPIDEMIOLOGY ,HEALTH outcome assessment ,CYTOCHROME b ,STROKE - Abstract
Summary: Objectives: Introduction of the Haemophilus influenzae type b (Hib) conjugate vaccine has resulted in a dramatic reduction of Hib disease in the U.S. and an increase in the relative importance of infections caused by nontypeable strains. The current project describes the characteristics and clinical outcomes of pediatric and adult patients with invasive H. influenzae (HI) and, through multivariable analysis, identifies risk factors for in-hospital mortality. Methods: HI cases were identified during 1999–2008 through active surveillance as part of Active Bacterial Core surveillance (ABCs). Multivariable analysis was performed with logistic regression to identify factors predictive of in-hospital death. Results: 4839 cases of HI were identified from 1999–2008. Children accounted for 17.1% of cases and adults 82.9%. Underlying conditions were present in 20.7% of children and 74.8% of adults. In-hospital mortality was highest in cases ≥65 years (21.9%) and <3 months (16.2%). The risk of in-hospital death in children <1 year was higher among those who were prematurely-born (<28 weeks, OR 7.1, 95% CI 3.2–15.6; 28–36 weeks OR 2.1, 95% CI 0.9–4.8) and, among children aged 1–17 years, higher in those with healthcare-associated onset and dialysis (OR 5.66, 95% CI 1.84–17.39; OR 18.11, 95% CI 2.77–118.65). In adults, age ≥40 was associated with death in nontypeable, but not encapsulated, infections. Infections with nontypeable strains increased the risk of death in cases ≥65 years (OR 1.81, 95% CI 1.31–2.52). Healthcare-associated HI, bacteremia without identifiable focus, bacteremic pneumonia, associated cirrhosis, cerebrovascular accident, dialysis, heart failure, and non-hematologic malignancy also increased the risk of death in adults. Conclusion: Prematurity in infants, advanced age and certain chronic diseases in adults were associated with an increased risk of in-hospital death. Nontypeable HI was associated with higher mortality in the elderly. [Copyright &y& Elsevier]
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- 2012
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21. The Global Meningococcal Initiative: Recommendations for reducing the global burden of meningococcal disease
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Harrison, Lee H., Pelton, Stephen I., Wilder-Smith, Annelies, Holst, Johan, Safadi, Marco A.P., Vazquez, Julio A., Taha, Muhamed-Kheir, LaForce, F. Marc, von Gottberg, Anne, Borrow, Ray, and Plotkin, Stanley A.
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NEISSERIA infections , *VIRAL vaccines , *PUBLIC health , *IMMUNOLOGY , *EPIDEMIOLOGY , *IMMUNIZATION , *DRUG efficacy , *MENINGITIS , *VACCINATION - Abstract
Abstract: The Global Meningococcal Initiative (GMI) is composed of an international group of scientists, clinicians and public health officials with expertise in meningococcal immunology, epidemiology and prevention. The primary goal of the GMI is the promotion of the global prevention of invasive meningococcal disease through education and research. The GMI members reviewed global meningococcal disease epidemiology, immunization strategies, and research needs. Over the past decade, substantial advances in meningococcal vaccine development have occurred and much has been learned about prevention from countries that have incorporated meningococcal vaccines into their immunization programs. The burden of meningococcal disease is unknown for many parts of the world because of inadequate surveillance, which severely hampers evidence-based immunization policy. As the field of meningococcal vaccine development advances, global surveillance for meningococcal disease needs to be strengthened in many regions of the world. For countries with meningococcal vaccination policies, research on vaccine effectiveness and impact, including indirect effects, is crucial for informing policy decisions. Each country needs to tailor meningococcal vaccination policy according to individual country needs and knowledge of disease burden. Innovative approaches are needed to introduce and sustain meningococcal vaccination programs in resource-poor settings with a high incidence of meningococcal disease. [Copyright &y& Elsevier]
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- 2011
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22. Phenotypic and molecular characterization of invasive serogroup W135 Neisseria meningitidis strains from 1990 to 2005 in Brazil.
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Lemos, Ana Paula S., Harrison, Lee H., Lenser, Melina, and Sacchi, Claudio T.
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NEISSERIA meningitidis ,SEROTYPES ,EPIDEMICS ,PULSED-field gel electrophoresis ,PHENOTYPES ,MOLECULAR microbiology - Abstract
Objective: Neisseria meningitidis serogroup W135 has been associated with global outbreaks since the 2000 Hajj. Considering that N. meningitidis serogroup W135 is the third most prevalent serogroup isolated in Brazil in the last 10 years, and the possibility that the Hajj-related N. meningitidis serogroup W135 clone has been causing disease in Brazil, the present study characterized invasive N. meningitidis serogroup W135 isolates recovered in Brazil from 1990 to 2005.Methods: The isolates were characterized by serotyping, PorA and PorB VR typing, FetA and 16S rRNA typing, multilocus sequence typing (MLST) and pulsed field gel electrophoresis (PFGE).Results: Based on MLST, 73% of the isolates were clustered in one major clone of ST-11 complex/ET37 complex. Strains of this clone had the same STs, serotypes and PorA VR types as found in Hajj-related N. meningitidis serogroup W135 clone. One of these strains had the Hajj-2000 outbreak strain genotype, including 16S rRNA gene sequence 31 and 84% relatedness by PFGE.Conclusion: Taken together, these data suggest that the Hajj-related N. meningitidis serogroup W135 clone is present in Brazil but has not yet caused a substantial number of infections. Given the emergence of N. meningitidis serogroup W135 globally and the unpredictability of meningococcal disease epidemiology, continued surveillance for this invasive N. meningitidis serogroup W135 clone is needed for control and prevention strategies. [ABSTRACT FROM AUTHOR]- Published
- 2010
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23. Biophysical models of fMRI responses
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Stephan, Klaas E, Harrison, Lee M, Penny, Will D, and Friston, Karl J
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MAGNETIC resonance imaging , *HEMODYNAMICS , *BLOOD , *CAUSAL models , *DIAGNOSTIC imaging - Abstract
Functional magnetic resonance imaging (fMRI) is used to investigate where the neural implementation of specific cognitive processes occurs. The standard approach uses linear convolution models that relate experimentally designed inputs, through a haemodynamic response function, to observed blood oxygen level dependent (BOLD) signals. Such models are, however, blind to the causal mechanisms that underlie observed BOLD responses. Recent developments have focused on how BOLD responses are generated and include biophysical input-state–output models with neural and haemodynamic state equations and models of functional integration that explain local dynamics through interactions with remote areas. Forward models with parameters at the neural level, such as dynamic causal modelling, combine both approaches, modelling the whole causal chain from external stimuli, via induced neural dynamics, to observed BOLD responses. [Copyright &y& Elsevier]
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- 2004
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24. Cost-Effectiveness and Public Health Impact of 24-Valent Pneumococcal Conjugate Vaccine Compared With the Recommended Pneumococcal Vaccines in Older Adults.
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Smith, Kenneth J., Wateska, Angela R., Nowalk, Mary Patricia, Lin, Chyongchiou J., Harrison, Lee H., Schaffner, William, and Zimmerman, Richard K.
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PNEUMOCOCCAL vaccines , *VACCINATION of children , *VACCINE effectiveness , *OLDER people , *MARKOV processes - Abstract
The potential impact of an in-development 24-valent pneumococcal conjugate vaccine compared with that of currently recommended vaccines in older adults is unclear. Similar to most currently available pneumococcal conjugate vaccines, 24-valent pneumococcal conjugate vaccine's formulation is based on childhood pneumococcal disease epidemiology. Decision analysis techniques were used to estimate 24-valent pneumococcal conjugate vaccine cost-effectiveness and public health effects in U.S. older adults. A Markov model compared 24-valent pneumococcal conjugate vaccine with currently recommended U.S. pneumococcal vaccination strategies in older adults (aged ≥65 years) and with no vaccination. Age-, race-, and chronic medical condition–specific pneumococcal illness risks and serotype-specific disease risks were obtained from Centers for Disease Control and Prevention data. Vaccine effectiveness was estimated using Delphi panel and clinical trial data. Vaccination and pneumococcal illness costs were from U.S. databases. Scenario analyses examined indirect effects of childhood pneumococcal vaccination on adult disease. Data were collected and analyses were performed in 2024. The 24-valent pneumococcal conjugate vaccine prevented fewer pneumococcal disease cases and deaths than the recently recommended 21-valent pneumococcal conjugate vaccine, which is formulated on the basis of adult pneumococcal disease serotypes. In cost-effectiveness analyses, 21-valent pneumococcal conjugate vaccine was economically favorable compared with 24-valent pneumococcal conjugate vaccine and all other vaccination strategies, both without and with consideration of potential childhood vaccination indirect effects. These findings were robust and consistent with those in deterministic and probabilistic sensitivity analyses. In older adults, 24-valent pneumococcal conjugate vaccine was clinically and economically unfavorable compared with 21-valent pneumococcal conjugate vaccine, which covers more adult disease–causing pneumococcal serotypes and is less susceptible to childhood vaccination indirect effects. [ABSTRACT FROM AUTHOR]
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- 2025
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25. Phylogenomic assessment of drug-resistant Mycobacterium tuberculosis strains from Beira, Mozambique.
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Namburete, Evangelina Inacio, Dippenaar, Anzaan, Conceição, Emilyn Costa, Feliciano, Cinara, Nascimento, Margarida Maria Passeri do, Peronni, Kamila Chagas, Silva, Wilson Araújo, Ferro, Josefo João, Harrison, Lee H., Warren, Robin Mark, and Bollela, Valdes Roberto
- Abstract
Mozambique is a high-burden tuberculosis (TB) country where TB/HIV co-infection and drug resistant TB (DR-TB) incidence is increasing. Whole genome sequencing (WGS) comprehensively describes the molecular epidemiology of TB, allows prediction of DR-TB phenotypes, lineages strains identification and better understanding of transmission chains. To describe genetic diversity of DR-TB Mycobacterium tuberculosis isolated in Beira, Mozambique. Descriptive cross-sectional study with 35 M. tuberculosis isolates, resistant to at least one first-line drug on molecular drug-susceptibility tests (DST). Variant identification, DR prediction and phylogenetic analysis provided by WGS, drug-susceptibility pattern compared to line-probe assay (LPA): Genotype MTBDR
TM plus and MTBDRTM sl. Lineage 4 (L4) was the most prevalent: 25 (71.4%) isolates; 5 (14.3%) L1 and 5 (14.3%) L2. WGS showed 33/35 (94.3%) isolates resistant to at least one drug, two pan-susceptible isolates that were previously diagnosed as DR-TB with genotype MTBDR plus. Concordance between WGS and LPA: 88.6% for isoniazid (INH), 85.7% to rifampicin (RPM), 91.4% for quinolones and 100% to second line injectable drugs. There were three possible TB transmission chains, 10 strains showing recent transmission. WGS provided reliable information about the most frequent lineages related to DR-TB in Beira, Mozambique: L4.3 (LAM), L2 (Beijing) and L1 (EAI) and possible recent transmission chain. [ABSTRACT FROM AUTHOR]- Published
- 2020
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26. Effectiveness of 13-valent pneumococcal conjugate vaccine for prevention of invasive pneumococcal disease among children in the United States between 2010 and 2019: An indirect cohort study.
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Andrejko, Kristin L., Gierke, Ryan, Rowlands, Jemma V., Rosen, Jennifer B., Thomas, Ann, Landis, Zachary Q., Rosales, Maria, Petit, Sue, Schaffner, William, Holtzman, Corinne, Barnes, Meghan, Farley, Monica M., Harrison, Lee H., McGee, Lesley, Chochua, Sopio, Verani, Jennifer R., Cohen, Adam L., Pilishvili, Tamara, and Kobayashi, Miwako
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PNEUMOCOCCAL vaccines , *JUVENILE diseases , *VACCINE effectiveness , *COHORT analysis , *STATISTICAL power analysis - Abstract
A U.S. case-control study (2010–2014) demonstrated vaccine effectiveness (VE) for ≥ 1 dose of the thirteen-valent pneumococcal conjugate vaccine (PCV13) against vaccine-type (VT) invasive pneumococcal disease (IPD) at 86 %; however, it lacked statistical power to examine VE by number of doses and against individual serotypes. We used the indirect cohort method to estimate PCV13 VE against VT-IPD among children aged < 5 years in the United States from May 1, 2010 through December 31, 2019 using cases from CDC's Active Bacterial Core surveillance, including cases enrolled in a matched case-control study (2010–2014). Cases and controls were defined as individuals with VT-IPD and non-PCV13-type-IPD (NVT-IPD), respectively. We estimated absolute VE using the adjusted odds ratio of prior PCV13 receipt (1-aOR x 100 %). Among 1,161 IPD cases, 223 (19.2 %) were VT cases and 938 (80.8 %) were NVT controls. Of those, 108 cases (48.4 %; 108/223) and 600 controls (64.0 %; 600/938) had received > 3 PCV13 doses; 23 cases (17.6 %) and 15 controls (2.4 %) had received no PCV doses. VE ≥ 3 PCV13 doses against VT-IPD was 90.2 % (95 % Confidence Interval75.4–96.1 %), respectively. Among the most commonly circulating VT-IPD serotypes, VE of ≥ 3 PCV13 doses was 86.8 % (73.7–93.3 %), 50.2 % (28.4–80.5 %), and 93.8 % (69.8–98.8 %) against serotypes 19A, 3, and 19F, respectively. At least three doses of PCV13 continue to be effective in preventing VT-IPD among children aged < 5 years in the US. PCV13 was protective against serotypes 19A and 19F IPD; protection against serotype 3 IPD did not reach statistical significance. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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27. Pneumococcal Vaccination Strategies in 50-Year-Olds to Decrease Racial Disparities: A US Societal Perspective Cost-Effectiveness Analysis.
- Author
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Altawalbeh, Shoroq M., Wateska, Angela R., Nowalk, Mary Patricia, Lin, Chyongchiou J., Harrison, Lee H., Schaffner, William, Zimmerman, Richard K., and Smith, Kenneth J.
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PNEUMOCOCCAL vaccines , *RACIAL inequality , *COST effectiveness , *ECONOMIC aspects of diseases , *QUALITY-adjusted life years , *EUGENICS - Abstract
This study assesses the impact of expanding pneumococcal vaccination to all 50-year-olds to decrease racial disparities by estimating from the societal perspective, the cost-effectiveness of 20-valent pneumococcal conjugate vaccine (PCV20) and 15-valent conjugate vaccine followed by 23-valent polysaccharide vaccine (PCV15/PPSV23) for 50-year-olds. A Markov model compared the cost-effectiveness of PCV20 or PCV15/PPSV23 in all general population 50- and 65-years-olds compared with current US recommendations and with no vaccination in US Black and non-Black cohorts. US data informed model parameters. Pneumococcal disease societal costs were estimated using direct and indirect costs of acute illness and of pneumococcal-related long-term disability and mortality. Hypothetical 50-year-old cohorts were followed over their lifetimes with costs and effectiveness discounted 3% per year. Deterministic and probabilistic sensitivity analyses assessed model uncertainty. In Black cohorts, PCV20 for all at ages 50 and 65 was the least costly strategy and had greater effectiveness than no vaccination and current recommendation strategies, whereas PCV15/PPSV23 at 50 and 65 cost more than $1 million per quality-adjusted life year (QALY) gained compared with PCV20 at 50 and 65. In non-Black cohorts, PCV20 at 50 and 65 cost $62 083/QALY and PCV15/PPSV23 at 50 and 65 cost more than $1 million/QALY with current recommendations, again being more costly and less effective. In probabilistic sensitivity analyses, PCV20 at 50 and 65 was favored in 85.7% (Black) and 61.8% (non-Black) of model iterations at a $100 000/QALY gained willingness-to-pay threshold. When considering the societal costs of pneumococcal disease, PCV20 at ages 50 and 65 years in the general US population is a potentially economically viable strategy, particularly in Black cohorts. • Some data support the cost-effectiveness of general population pneumococcal vaccination of all 50-year-olds in Black and non-Black cohorts compared with risk-based vaccination from the healthcare perspective. However, little is known about the cost-effectiveness of vaccinating all 50-year-olds from the societal perspective. • This study showed that 20-valent pneumococcal conjugate vaccine at ages 50 and 65 years was an economically favorable vaccination strategy from the societal perspective. Findings were especially favorable in the Black population. • Recommending pneumococcal vaccination for general population 50-year-olds warrants consideration if reducing pneumococcal disease disparities in underserved minorities is a priority. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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28. Cost-effectiveness of an in-development adult-formulated 21-valent pneumococcal conjugate vaccine in US adults aged 50 years or older.
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Altawalbeh, Shoroq M., Wateska, Angela R., Nowalk, Mary Patricia, Lin, Chyongchiou J., Harrison, Lee H., Schaffner, William, Zimmerman, Richard K., and Smith, Kenneth J.
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PNEUMOCOCCAL vaccines , *VACCINATION of children , *STREPTOCOCCAL diseases , *ADULTS , *COST effectiveness - Abstract
Indirect effects of childhood pneumococcal conjugate vaccines (PCV) have diminished the cost-effectiveness of current adult vaccine recommendations. An in-development adult-formulated 21-valent pneumococcal conjugate vaccine (PCV21) may play a critical role in reducing pneumococcal illness by targeting a larger number of serotypes responsible for adult pneumococcal infections. This study assesses the cost-effectiveness of PCV21 in US adults aged 50 years or older compared with currently recommended pneumococcal vaccines, from both the societal and healthcare perspectives. A Markov model evaluated the lifetime cost-effectiveness of PCV21 (given at age 50 years only, at ages 50/65 years, and risk-based at ages < 65 years plus age-based at age 65 years) compared to no vaccination and to currently recommended pneumococcal vaccines given either as currently recommended or routinely at ages 50/65 years. The analysis was conducted in hypothetical Black and non-Black cohorts aged 50 years or older, with and without considering childhood pneumococcal vaccination indirect effects. Model parameters were based on US data. Parameter uncertainty was assessed using 1-way and probabilistic sensitivity analyses. From the societal perspective, PCV21 at ages 50/65 years compared to PCV21 at age 50 years cost $7,410 per quality adjusted life year (QALY) gained in Black cohort analyses and $85,696/QALY gained in the non-Black cohort; PCV21 at ages 50/65 years had the most favorable public health outcomes. From the healthcare perspective, compared to no vaccination, PCV21 at age 50 years cost $46,213/QALY gained in the Black cohort and $86,629/QALY in non-Blacks. All other strategies were dominated in both cohorts and from both perspectives. When considering childhood pneumococcal vaccination indirect effects, costs of PCV21 at ages 50/65 years remained less than $140,000/QALY gained from the societal perspective in both populations. PCV21 is potentially cost-effective compared to currently approved pneumococcal vaccines in adults aged 50 years or older from both the societal and healthcare perspectives. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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29. Vaccines for Prevention of Group B Meningococcal Disease: Not Your Father's Vaccines.
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Harrison, Lee H.
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MENINGOCOCCAL vaccines , *MENINGOCOCCAL infections , *VACCINE effectiveness , *MEDICATION safety , *VACCINATION , *PREVENTION - Abstract
For decades, there was no licensed vaccine for prevention of endemic capsular group B meningococcal disease, despite the availability of vaccines for prevention of the other most common meningococcal capsular groups. Recently, however, two new vaccines have been licensed for prevention of group B disease. Although immunogenic and considered to have an acceptable safety profile, there are many scientific unknowns about these vaccines, including effectiveness against antigenically diverse endemic meningococcal strains; duration of protection; whether they provide any herd protection; and whether there will be meningococcal antigenic changes that will diminish effectiveness over time. In addition, these vaccines present societal dilemmas that could influence how they are used in the U.S., including high vaccine cost in the face of a historically low incidence of meningococcal disease. These issues are discussed in this review. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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30. Cost-effectiveness of an in-development adult-formulated pneumococcal vaccine in older US adults.
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Wateska, Angela R., Nowalk, Mary Patricia, Lin, Chyongchiou J., Harrison, Lee H., Schaffner, William, Zimmerman, Richard K., and Smith, Kenneth J.
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OLDER people , *PNEUMOCOCCAL vaccines , *VACCINATION of children , *VACCINE effectiveness , *COST effectiveness , *BLACK children - Abstract
CDC pneumococcal vaccination recommendations for older adults now include either 15- or 20-valent pneumococcal conjugate vaccine (PCV15/PCV20). However, an in-development 21-valent vaccine (PCV21), formulated based on adult pneumococcal disease epidemiology, could substantially increase coverage of disease-causing pneumococcal serotypes, particularly in Black older adults, who are at greater risk. The potential public health impact and cost-effectiveness of PCV21 compared to currently recommended vaccines in older adults is unclear. A Markov decision model compared current pneumococcal vaccination recommendations to PCV21 use in Black and non-Black 65-year-old cohorts. CDC Active Bacterial Core surveillance data informed population and serotype-specific pneumococcal disease risk. Vaccine effectiveness was estimated using Delphi panel estimates and clinical trial data, with variation in sensitivity analyses. Potential indirect effects on adult disease from PCV15 childhood vaccination were examined. All model parameters were varied individually and collectively in sensitivity analyses. Scenarios with decreased PCV21 effectiveness and potential COVID-19 pandemic effects were also examined. In the Black cohort, the PCV21 strategy cost $88,478 per quality adjusted life-year (QALY) gained without and $97,952/QALY with childhood PCV15 indirect effects. PCV21 in the non-Black cohort cost $127,436/QALY gained without and $141,358/QALY with childhood PCV15 effects. Current recommendation strategies were economically unfavorable, regardless of population or indirect childhood vaccination effects. Results favoring PCV21 use were robust in sensitivity analyses and alternative scenarios. An in-development PCV21 vaccine would likely be economically and clinically favorable compared to currently recommended pneumococcal vaccines in older adults. While PCV21 was more favorable in Black cohort analyses, results for both Black and non-Black populations were economically reasonable, highlighting the potential importance of adult-specific pneumococcal vaccine formulations and, pending further investigation, potentially justifying a future general population recommendation for PCV21 use in older adults. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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31. Global epidemiology of meningococcal disease
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Harrison, Lee H., Trotter, Caroline L., and Ramsay, Mary E.
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MENINGITIS vaccines , *NEISSERIA meningitidis , *PUBLIC health , *EPIDEMIOLOGY , *MEDICAL geography , *EPIDEMICS , *SEROTYPES - Abstract
Abstract: As reviewed in this paper, meningococcal disease epidemiology varies substantially by geographic area and time. The disease can occur as sporadic cases, outbreaks, and large epidemics. Surveillance is crucial for understanding meningococcal disease epidemiology, as well as the need for and impact of vaccination. Despite limited data from some regions of the world and constant change, current meningococcal disease epidemiology can be summarized by region. By far the highest incidence of meningococcal disease occurs in the meningitis belt of sub-Saharan Africa. During epidemics, the incidence can approach 1000 per 100,000, or 1% of the population. Serogroup A has been the most important serogroup in this region. However, serogroup C disease has also occurred, as has serogroup X disease and, most recently, serogroup W-135 disease. In the Americas, the reported incidence of disease, in the range of 0.3–4 cases per 100,000 population, is much lower than in the meningitis belt. In addition, in some countries such as the United States, the incidence is at an historical low. The bulk of the disease in the Americas is caused by serogroups C and B, although serogroup Y causes a substantial proportion of infections in some countries and W-135 is becoming increasingly problematic as well. The majority of meningococcal disease in European countries, which ranges in incidence from 0.2 to 14 cases per 100,000, is caused by serogroup B strains, particularly in countries that have introduced serogroup C meningococcal conjugate vaccines. Serogroup B also predominates in Australia and New Zealand, in Australia because of the control of serogroup C disease through vaccination and in New Zealand because of a serogroup B epidemic. Based on limited data, most disease in Asia is caused by serogroup A and C strains. Although this review summarizes the current status of meningococcal disease epidemiology, the dynamic nature of this disease requires ongoing surveillance both to provide data for vaccine formulation and vaccine policy and to monitor the impact of vaccines following introduction. [Copyright &y& Elsevier]
- Published
- 2009
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32. Spatial correlations in the chemical deposition observed by the OSCAR experiments
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Harrison, Lee C.
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- 1992
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33. A comparison of optical and aerodynamic aerosol sizes: The effects of inhomogeneous particles
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Harrison, Lee and Harrison, Halstead
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- 1982
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34. Global epidemiology of capsular group W meningococcal disease (1970–2015): Multifocal emergence and persistence of hypervirulent sequence type (ST)-11 clonal complex.
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Mustapha, Mustapha M., Marsh, Jane W., and Harrison, Lee H.
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MENINGOCOCCAL infections , *GENOMES , *EPIDEMIOLOGY , *ENDEMIC diseases - Abstract
Following an outbreak in Mecca Saudi Arabia in 2000, meningococcal strains expressing capsular group W (W) emerged as a major cause of invasive meningococcal disease (IMD) worldwide. The Saudi Arabian outbreak strain (Hajj clone) belonging to the ST-11 clonal complex (cc11) is similar to W cc11 causing occasional sporadic disease before 2000. Since 2000, W cc11 has caused large meningococcal disease epidemics in the African meningitis belt and endemic disease in South America, Europe and China. Traditional molecular epidemiologic typing suggested that a majority of current W cc11 burden represented global spread of the Hajj clone. However, recent whole genome sequencing (WGS) analyses revealed significant genetic heterogeneity among global W cc11 strains. While continued spread of the Hajj clone occurs in the Middle East, the meningitis belt and South Africa have co-circulation of the Hajj clone and other unrelated W cc11 strains. Notably, South America, the UK, and France share a genetically distinct W cc11 strain. Other W lineages persist in low numbers in Europe, North America and the meningitis belt. In summary, WGS is helping to unravel the complex genomic epidemiology of group W meningococcal strains. Wider application of WGS and strengthening of global IMD surveillance is necessary to monitor the continued evolution of group W lineages. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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35. Cost-effectiveness of revised US pneumococcal vaccination recommendations in underserved minority adults < 65-years-old.
- Author
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Wateska, Angela R., Patricia Nowalk, Mary, Lin, Chyongchiou J., Harrison, Lee H., Schaffner, William, Zimmerman, Richard K., and Smith, Kenneth J.
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PNEUMOCOCCAL vaccines , *VACCINE effectiveness , *VACCINATION status , *HEALTH equity , *COST effectiveness - Abstract
The 15- and 20-valent pneumococcal conjugate vaccines (PCV15/PCV20) were recently recommended for US adults, giving either PCV20 alone or PCV15 followed by 23-valent pneumococcal polysaccharide vaccine (PPSV23) to all 65 + -year-olds and to high-risk younger adults. However, general population recommendations to vaccinate all 50-year-olds could reduce racial pneumococcal disease disparities given greater risk in underserved minority populations. A Markov model examining hypothetical 50-year-old Black cohorts (serving as a proxy for underserved minorities) and non-Black cohorts estimated the incremental cost effectiveness of US adult pneumococcal vaccination recommendations compared to PCV20 or PCV15/PPSV23 for all 50-year-olds with no vaccination thereafter, or PCV20 or PCV15/PPSV23 for all at ages 50 and 65 years (50/65). Model parameters came from US databases, clinical trials, and Delphi panels. Cohorts were followed over their lifetimes from a healthcare perspective discounted at 3 %/year. PCV15/PPSV23 given at ages 50/65 had greatest public health impact. In Black cohorts, PCV15/PPSV23 at age 50 cost $104,723/quality adjusted life year (QALY) gained compared to PCV20 at age 50, while PCV15/PPSV23 at 50/65 cost $240,952/QALY gained compared to PCV15/PPSV23 at age 50. Both current recommendation options were more expensive and less effective than other strategies in both cohorts. In sensitivity analyses, age-based PCV20 or PCV15/PPSV23 use at ages 50 or 50/65 could be favorable depending on vaccine effectiveness or differential vaccine uptake, while current recommendations remained unfavorable. Recent risk-based US adult pneumococcal vaccination recommendations for adults < 65-years-old, were economically and clinically unfavorable compared to general population vaccination of all 50-year-olds in Black and non-Black cohorts. An age-based pneumococcal vaccination recommendation at age 50 years may reduce inequities in pneumococcal disease burden. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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- View/download PDF
36. Corrigendum to "Cost-effectiveness of an in-development adult-formulated 21-valent pneumococcal conjugate vaccine in US adults aged 50 years or older" [Vaccine 42 (2024) 3024–3032].
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Altawalbeh, Shoroq M., Wateska, Angela R., Patricia Nowalk, Mary, Lin, Chyongchiou J., Harrison, Lee H., Schaffner, William, Zimmerman, Richard K., and Smith, Kenneth J.
- Subjects
- *
PNEUMOCOCCAL vaccines , *COST effectiveness , *ADULTS , *VACCINES - Published
- 2024
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37. Frequency of factor H-binding protein modular groups and susceptibility to cross-reactive bactericidal activity in invasive meningococcal isolates
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Pajon, Rolando, Beernink, Peter T., Harrison, Lee H., and Granoff, Dan M.
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CARRIER proteins , *MODULAR groups , *NEISSERIA meningitidis , *BIOINFORMATICS , *RECOMBINANT proteins , *BACTERIAL vaccines - Abstract
Abstract: Meningococcal factor H-binding protein (fHbp) is a promising vaccine candidate that elicits serum bactericidal antibodies in humans. Based on sequence variability of the entire protein, fHbp has been divided into three variant groups or two sub-families. We recently reported that the fHbp architecture was modular, consisting of five variable segments, each encoded by genes from one of two lineages. Based on combinations of segments from different lineages, all 70 known fHbp sequence variants could be classified into one of six modular groups. In this study, we analyzed sequences of 172 new fHbp variants that were available from public databases. All but three variants could be classified into one of the six previously described modular groups. Among systematically collected invasive group B isolates from the U.S. and Europe, modular group I overall was most common (60%) but group IV (natural chimeras) accounted for 23% of UK isolates and <1% of U.S. isolates (P <0.0001). Mouse antisera to recombinant fHbp from each of the modular groups showed modular group-specific bactericidal activity against strains with low fHbp expression but had broader activity against strains with higher fHbp expression. Thus both modular group and relative expression of fHbp affected strain susceptibility to anti-fHbp bactericidal activity. The results confirmed the modular architecture of fHbp and underscored its importance for the design of broadly protective group B vaccines in different regions. [Copyright &y& Elsevier]
- Published
- 2010
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38. Integrated Bayesian models of learning and decision making for saccadic eye movements
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Brodersen, Kay H., Penny, Will D., Harrison, Lee M., Daunizeau, Jean, Ruff, Christian C., Duzel, Emrah, Friston, Karl J., and Stephan, Klaas E.
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SACCADIC eye movements , *UNCERTAINTY , *THRESHOLD (Perception) , *BAYESIAN analysis , *ARTIFICIAL neural networks , *BIOLOGICAL neural networks , *LINEAR statistical models - Abstract
Abstract: The neurophysiology of eye movements has been studied extensively, and several computational models have been proposed for decision-making processes that underlie the generation of eye movements towards a visual stimulus in a situation of uncertainty. One class of models, known as linear rise-to-threshold models, provides an economical, yet broadly applicable, explanation for the observed variability in the latency between the onset of a peripheral visual target and the saccade towards it. So far, however, these models do not account for the dynamics of learning across a sequence of stimuli, and they do not apply to situations in which subjects are exposed to events with conditional probabilities. In this methodological paper, we extend the class of linear rise-to-threshold models to address these limitations. Specifically, we reformulate previous models in terms of a generative, hierarchical model, by combining two separate sub-models that account for the interplay between learning of target locations across trials and the decision-making process within trials. We derive a maximum-likelihood scheme for parameter estimation as well as model comparison on the basis of log likelihood ratios. The utility of the integrated model is demonstrated by applying it to empirical saccade data acquired from three healthy subjects. Model comparison is used (i) to show that eye movements do not only reflect marginal but also conditional probabilities of target locations, and (ii) to reveal subject-specific learning profiles over trials. These individual learning profiles are sufficiently distinct that test samples can be successfully mapped onto the correct subject by a naïve Bayes classifier. Altogether, our approach extends the class of linear rise-to-threshold models of saccadic decision making, overcomes some of their previous limitations, and enables statistical inference both about learning of target locations across trials and the decision-making process within trials. [Copyright &y& Elsevier]
- Published
- 2008
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39. A free energy principle for the brain
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Friston, Karl, Kilner, James, and Harrison, Lee
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BRAIN , *NEUROBIOLOGY , *NEUROSCIENCES , *NEUROPHYSIOLOGY - Abstract
Abstract: By formulating Helmholtz’s ideas about perception, in terms of modern-day theories, one arrives at a model of perceptual inference and learning that can explain a remarkable range of neurobiological facts: using constructs from statistical physics, the problems of inferring the causes of sensory input and learning the causal structure of their generation can be resolved using exactly the same principles. Furthermore, inference and learning can proceed in a biologically plausible fashion. The ensuing scheme rests on Empirical Bayes and hierarchical models of how sensory input is caused. The use of hierarchical models enables the brain to construct prior expectations in a dynamic and context-sensitive fashion. This scheme provides a principled way to understand many aspects of cortical organisation and responses. In this paper, we show these perceptual processes are just one aspect of emergent behaviours of systems that conform to a free energy principle. The free energy considered here measures the difference between the probability distribution of environmental quantities that act on the system and an arbitrary distribution encoded by its configuration. The system can minimise free energy by changing its configuration to affect the way it samples the environment or change the distribution it encodes. These changes correspond to action and perception respectively and lead to an adaptive exchange with the environment that is characteristic of biological systems. This treatment assumes that the system’s state and structure encode an implicit and probabilistic model of the environment. We will look at the models entailed by the brain and how minimisation of its free energy can explain its dynamics and structure. [Copyright &y& Elsevier]
- Published
- 2006
- Full Text
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40. Should older adult pneumococcal vaccination recommendations change due to decreased vaccination in children during the pandemic? A cost-effectiveness analysis.
- Author
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Smith, Kenneth J., Wateska, Angela R., Nowalk, Mary Patricia, Lin, Chyongchiou J., Harrison, Lee H., Schaffner, William, and Zimmerman, Richard K.
- Subjects
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OLDER people , *VACCINATION of children , *PNEUMOCOCCAL vaccines , *COVID-19 pandemic , *ADULTS , *CHILD patients - Abstract
• Childhood vaccination has decreased during the pandemic, potentially leading to increased pneumococcal disease. • As a result, changes to older adult pneumococcal vaccination recommendations could be considered. • Plausible pneumococcal illness increases do not favor heightened PCV13 use in older adults. • Current vaccination recommendations for older adults should not change based on pediatric vaccination rates. The COVID-19 pandemic is causing declines in childhood immunization rates. We examined potential COVID-19-related changes in pediatric 13-valent pneumococcal conjugate vaccine (PCV13) use, subsequent impact on childhood and adult pneumococcal disease rates, and how those changes might affect the favorability of PCV13 use in non-immunocompromised adults aged ≥65 years. A Markov model estimated pediatric disease resulting from decreased PCV13 use in children aged <5 years; absolute decreases from 10 to 50% for 1–2 years duration were examined, assuming no catch-up vaccination and that decreased vaccination led to proportionate increases in PCV13 serotype pneumococcal disease in children and seniors. Integrating pediatric model output into a second Markov model examining 65-year-olds, we estimated the cost effectiveness of older adult pneumococcal vaccination strategies while accounting for potential epidemiologic changes from decreased pediatric vaccination. One year of 10–50% absolute decreases in PCV13 use in <5-year-olds increased pneumococcal disease by an estimated 4–19% in seniors; 2 years of decreased use increased senior rates by 8–38%. In seniors, a >53% increase in pneumococcal disease was required to favor PCV13 use in non-immunocompromised seniors at a $200,000 per quality-adjusted life-year gained threshold, which corresponded to absolute decreases in pediatric PCV13 vaccination of >50% over a 2-year period. In sensitivity analyses, senior PCV13 vaccination was unfavorable if absolute decreases in pediatric PCV13 receipt were within plausible ranges, despite model assumptions favoring PCV13 use in seniors. COVID-19-related decreases in pediatric PCV13 use would need to be both substantial and prolonged to make heightened PCV13 use in non-immunocompromised seniors economically favorable. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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41. Higher-Valency Pneumococcal Conjugate Vaccines: An Exploratory Cost-Effectiveness Analysis in U.S. Seniors.
- Author
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Smith, Kenneth J., Wateska, Angela R., Nowalk, Mary Patricia, Lin, Chyongchiou J., Harrison, Lee H., Schaffner, William, and Zimmerman, Richard K.
- Subjects
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PNEUMOCOCCAL vaccines , *OLDER people , *VACCINE effectiveness , *ADULTS , *HERD immunity , *COST effectiveness - Abstract
Introduction: Use of the 13-valent pneumococcal conjugate vaccine in nonimmunocompromised adults aged ≥65 years is controversial. Higher-valency conjugate vaccines (15-valent and 20-valent ) are under development; their potential cost effectiveness in older adults is unknown, particularly when potential indirect (herd immunity) effects from childhood vaccination are considered.Methods: A Markov model estimated the cost effectiveness of current U.S. recommendations and alternative strategies using currently available and in-development pneumococcal conjugate vaccines in seniors. Separately, strategies using a hypothetical 20-valent vaccine adding the 7 most common disease-causing non-13-valent vaccine serotypes were considered. Sensitivity analyses were performed and alternative scenarios were examined. Data were gathered and the analyses were performed in 2020.Results: In analyses considering only existing and in-development vaccines, sole 20-valent vaccine use cost $172,491/quality-adjusted life year gained compared with current U.S. recommendations under baseline assumptions (equal serotype effectiveness and no childhood vaccination indirect effects). Strategies using 15-valent vaccine were more costly and less effective. When 13-valent/20-valent vaccines were assumed ineffective against pneumococcal serotype 3 and 15-valent vaccine was fully effective, 15-valent vaccine cost $237,431/quality-adjusted life year gained. With indirect effects considered, 15-valent or 20-valent vaccine cost >$449,000/quality-adjusted life year gained. When adding hypothetical 20-valent vaccine under baseline assumptions, hypothetical 20-valent vaccine cost $139,348/quality-adjusted life year gained.Conclusions: In-development pneumococcal conjugate vaccines may be economically unreasonable in older adults, regardless of serotype effectiveness assumptions, particularly when considering potential indirect effects from use of those vaccines in children. Adult vaccines containing high-risk serotypes not contained in childhood vaccines may be more promising. [ABSTRACT FROM AUTHOR]- Published
- 2021
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42. Is further research on adult pneumococcal vaccine uptake improvement programs worthwhile? Α value of information analysis.
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Wateska, Angela R., Nowalk, Mary Patricia, Jalal, Hawre, Lin, Chyongchiou J., Harrison, Lee H., Schaffner, William, Zimmerman, Richard K., and Smith, Kenneth J.
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PNEUMOCOCCAL vaccines , *ADULTS , *OLDER people , *YOUNG adults , *PARAMETERS (Statistics) , *SENSITIVITY analysis - Abstract
Pneumococcal vaccination policy for US adults is evolving, but previous research has shown that programs to increase vaccine uptake are economically favorable, despite parameter uncertainty. Using value of information (VOI) analysis and prior analyses, we examine the value of further research on vaccine uptake program parameters. In US 50–64-year-olds, current vaccine recommendations with and without an uptake program were analyzed. In older adults, current recommendations and an alternative strategy (polysaccharide vaccine for all, adding conjugate vaccine only for the immunocompromised) with and without uptake programs were examined. Uptake program parameters were derived from a clinical trial (absolute uptake increase 12.3% [range 0–25%], per-person cost $1.78 [range $0.70–$2.26]), with other parameters obtained from US databases. VOI analyses incorporated probabilistic sensitivity analysis outputs into R-based regression techniques. In 50–64-year-olds, an uptake program cost $54,900/QALY gained compared to no uptake program. For ages ≥65, the program cost $287,000/QALY gained with the alternative strategy and $765,000/QALY with current recommendations. In younger adults, population-level expected value of perfect information (EVPI) was $59.7 million at $50,000/QALY gained and $2.8 million at $100,000/QALY gained. In older adults, EVPI values ranged from ~$1 million to $34.5 million at $100,000 and $200,000/QALY thresholds. The population expected value of partial perfect information (EVPPI) for combined uptake program cost and uptake improvement parameters in the younger population was $368,700 at $50,000/QALY and $43,900 at $100,000/QALY gained thresholds. In older adults, population EVPPI for vaccine uptake program parameters was $0 at both thresholds, reaching a maximum value of $445,000 at a $225,000/QALY threshold. Other model parameters comprised larger components of the global EVPI. VOI results do not support further research on pneumococcal vaccine uptake programs in adults at commonly cited US cost-effectiveness benchmarks. Further research to reduce uncertainty in other aspects of adult pneumococcal vaccination is justifiable. [ABSTRACT FROM AUTHOR]
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- 2021
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43. Dynamics of antimicrobial resistance of Streptococcus pneumoniae following PCV10 introduction in Brazil: Nationwide surveillance from 2007 to 2019.
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Brandileone, Maria-Cristina C., Almeida, Samanta C.G., Bokermann, Sergio, Minamisava, Ruth, Berezin, Eitan N., Harrison, Lee H., and Andrade, Ana-Lucia
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STREPTOCOCCUS pneumoniae , *DRUG resistance in microorganisms , *PNEUMOCOCCAL vaccines , *ANTIBIOTICS , *PENICILLIN , *CEFTRIAXONE , *COLISTIN - Abstract
Brazil introduced 10-valent pneumococcal conjugate vaccine (PCV10) into its immunization program in 2010. We assessed antimicrobial susceptibility of Streptococcus pneumoniae (Spn) obtained from a national surveillance system for invasive pneumococcal diseases (IPD) before/after PCV10 introduction. Antimicrobial non-susceptible isolates were defined as intermediate or resistant. Minimum inhibitory concentrations (MICs) to penicillin and ceftriaxone were analyzed by year. Antimicrobial susceptibility rates were assessed for each three-year-period using the pre-PCV10-period as reference. Susceptibility of vaccine-types was evaluated for 2017–2019. 11,380 isolates were studied. Spn with penicillin ≥ 0.125 mg/L and ceftriaxone ≥ 1.0 mg/L decreased in the three-years after PCV10 introduction (2011–2013: penicillin, 28.1–22.5%; ceftriaxone, 11.3%-7.6%) versus pre-PCV10-years (2007–2009: penicillin, 33.8–38.1%; ceftriaxone, 17.2%-15.6%). After 2013, the proportion of Spn with those MICs to penicillin and ceftriaxone increased to 39.4% and 19.7% in 2019, respectively. Non-susceptibility to penicillin and ceftriaxone increased in 2014–2016, and again in 2017–2019 especially among children < 5 years with meningitis (penicillin, 53.9%; ceftriaxone, 28.0%); multidrug-resistance reached 25% in 2017–2019. Serotypes 19A, 6C and 23A were most associated with antimicrobial non-susceptibility. Antimicrobial non-susceptible Spn decreased in the three-years after vaccination but subsequently increased and was associated with non-PCV10-types. Antimicrobial susceptibility surveillance is fundamental for guiding antibiotic therapy policies. [ABSTRACT FROM AUTHOR]
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- 2021
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44. Pneumococcal Vaccination in Adults Aged ≥65 Years: Cost-Effectiveness and Health Impact in U.S. Populations.
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Wateska, Angela R., Nowalk, Mary Patricia, Lin, Chyongchiou J., Harrison, Lee H., Schaffner, William, Zimmerman, Richard K., and Smith, Kenneth J.
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EPIDEMIOLOGICAL transition , *PNEUMOCOCCAL vaccines , *QUALITY-adjusted life years , *VACCINATION , *COST effectiveness , *MARKOV processes , *PATIENTS - Abstract
Introduction: Recommending both the conjugate and polysaccharide pneumococcal vaccines to all U.S. seniors may have little public health impact and be economically unreasonable. Public health impact and cost-effectiveness of using both vaccines in all adults aged ≥65 years were estimated compared with an alternative strategy (omitting pneumococcal conjugate vaccine in the nonimmunocompromised) and with the newly revised recommendation (giving or omitting conjugate vaccine based on patient-physician shared decision making).Methods: Strategies were examined in hypothetical U.S. 65-year-old population cohorts and segmented into health states based on age- and population-specific data in a Markov state-transition model with a lifetime time horizon from a healthcare perspective. Black population cohorts were examined separately given greater illness risk and lower vaccine uptake. Model parameters came from the Centers for Disease Control Active Core Bacterial Surveillance network, National Health Interview Survey, and Nationwide Inpatient Sample data. Outcomes included incremental costs per quality-adjusted life year gained and pneumococcal disease outcomes for each strategy. Data were gathered and analysis performed in 2018.Results: Giving both vaccines, either routinely or with shared decision making, was most effective, reducing pneumococcal disease incidence compared with no vaccination, but costing $765,000-$2.18 million/quality-adjusted life year gained. Depending on examined population and scenario, the alternative strategy cost $65,700-$226,700/quality-adjusted life year gained (less in black populations) and reduced cases and deaths by 0.3%-0.9%.Conclusions: A vaccination strategy that omits pneumococcal conjugate vaccine in immunocompetent U.S. seniors may be economically reasonable, particularly for black seniors. Use of both pneumococcal vaccines was more effective but substantially more expensive. [ABSTRACT FROM AUTHOR]- Published
- 2020
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45. Real-time genomic epidemiologic investigation of a multispecies plasmid-associated hospital outbreak of NDM-5-producing Enterobacterales infections.
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Raabe, Nathan J., Valek, Abby L., Griffith, Marissa P., Mills, Emma, Waggle, Kady, Srinivasa, Vatsala Rangachar, Ayres, Ashley M., Bradford, Claire, Creager, Hannah M., Pless, Lora L., Sundermann, Alexander J., Van Tyne, Daria, Snyder, Graham M., and Harrison, Lee H.
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WHOLE genome sequencing , *BIOSURVEILLANCE , *INFECTION prevention , *INFECTION control , *PLASMIDS , *HOSPITAL patients - Abstract
• Two-year hospital outbreak involving 15 patients and 7 Enterobacteriaceae species. • All isolates harbored nearly identical New Delhi metallo-β-lactamase encoding plasmids. • Identified 10 plasmid transfers and 6 bacterial transmissions among 15 patients. • Intervened on plasmid transfer and bacterial transmission routes. • Real-time whole genome sequencing helped tailor infection prevention interventions. New Delhi metallo-β-lactamase (NDM) is an emergent mechanism of carbapenem resistance associated with high mortality and limited treatment options. Because the bla NDM resistance gene is often carried on plasmids, traditional infection prevention and control (IP&C) surveillance methods and reactive whole genome sequencing (WGS) may not detect plasmid transfer in multispecies outbreaks. Initial outbreak detection of NDM-producing Enterobacterales identified at an acute care hospital occurred via traditional IP&C methods and was supplemented by real-time WGS surveillance performed weekly. To resolve NDM-encoding plasmids, we performed long-read sequencing and constructed hybrid assemblies. WGS data for suspected outbreaks was shared with the IP&C team for assessment and intervention. We observed a multispecies outbreak of NDM-5-producing Enterobacterales isolated from 15 patients between February 2021 and February 2023. The 19 clinical and surveillance isolates sequenced included 7 bacterial species encoding the same NDM-5 plasmid. WGS surveillance and epidemiologic investigation characterized 10 horizontal plasmid transfer events and 6 bacterial transmission events between patients in varying hospital units. Our investigation revealed a complex, multispecies outbreak of NDM involving multiple plasmid transfer and bacterial transmission events. We highlight the utility of combining traditional IP&C and prospective genomic methods in identifying and containing plasmid-associated outbreaks. [ABSTRACT FROM AUTHOR]
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- 2024
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46. Cost-effectiveness of adult pneumococcal vaccination policies in underserved minorities aged 50–64 years compared to the US general population.
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Wateska, Angela R., Nowalk, Mary Patricia, Lin, Chyongchiou J., Harrison, Lee H., Schaffner, William, Zimmerman, Richard K., and Smith, Kenneth J.
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PNEUMOCOCCAL vaccines , *POPULATION , *VACCINATION of adults , *GOVERNMENT policy - Abstract
Abstract Background Changing pneumococcal disease epidemiology due to childhood vaccination has prompted re-examination of US adult pneumococcal vaccination policies, as have considerations of greater pneumococcal disease incidence and higher prevalence of conditions that increase risk in underserved minority populations. Prior analyses suggest routine pneumococcal vaccination at age 50 could be considered, which could disproportionately benefit underserved populations. Methods A Markov cohort model estimated the cost-effectiveness of US pneumococcal vaccination policies in hypothetical 50-year-old underserved minority and general population cohorts. Strategies included receiving one or both available pneumococcal vaccines based on age- or chronic condition-specific criteria. US databases and medical literature data calibrated pneumococcal illness incidence, vaccine serotype distributions, age- and race-specific chronic condition distributions, and costs. Black population data were used as a proxy for underserved minorities. We took a US healthcare perspective, discounting at 3%/year. One-way and probabilistic sensitivity analyses were performed and scenarios modeling differing vaccine assumptions were examined. Results In both black and general population 50-year-olds, giving both pneumococcal vaccines to all 50-year-olds prevented the most disease, but cost >$250,000 per quality adjusted life year (QALY) gained. Current CDC recommendations (both vaccines for the immunocompromised, polysaccharide vaccine for other high-risk conditions) were economically favorable in either population when analyses assumed polysaccharide vaccine was ineffective against nonbacteremic pneumococcal pneumonia (NBP). If polysaccharide vaccine is effective against NBP or if less complex age-based vaccination recommendations result in increased vaccine uptake, giving polysaccharide vaccine to all 50-year-olds cost <$100,000/QALY; this effect was more pronounced in black cohorts. Results were robust in 1-way and probabilistic sensitivity analyses. Conclusions Despite changes in pneumococcal epidemiology, current CDC recommendations were favored in underserved minority and general population cohorts. Polysaccharide vaccine for all 50-year-olds could be considered under some vaccine uptake and effectiveness assumptions, particularly if mitigating racial health disparities in pneumococcal disease is a priority. [ABSTRACT FROM AUTHOR]
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- 2019
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47. Streptococcus pneumoniae colonization after introduction of 13-valent pneumococcal conjugate vaccine for US adults 65 years of age and older, 2015–2016.
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Milucky, Jennifer, Carvalho, Maria de Gloria, Rouphael, Nadine, Bennett, Nancy M., Talbot, H.Keipp, Harrison, Lee H., Farley, Monica M., Walston, Jeremy, Pimenta, Fabiana, and Lessa, Fernanda C.
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STREPTOCOCCUS pneumoniae , *PNEUMOCOCCAL vaccines , *VACCINATION of adults , *DISEASE risk factors , *POLYMERASE chain reaction - Abstract
Abstract Background Vaccination of children with 13-valent pneumococcal conjugate vaccine (PCV13) led to declines in vaccine-type pneumococcal nasopharyngeal carriage among adults through indirect effects. In August 2014, PCV13 immunization of all U.S. adults ≥65 years of age was recommended. This study sought to define prevalence and serotype distribution of pneumococcal carriage among adults ≥65 years of age and to describe risk factors for colonization soon after introduction of PCV13 in adults. Methods A cross-sectional survey of non-institutionalized U.S. adults ≥65 years of age was conducted in four states in 2015–2016. Demographic information, risk factors for disease, PCV13 vaccination history, and nasopharyngeal (NP) and oropharyngeal (OP) swabs were collected. NP and OP swabs were processed separately and pneumococcal isolates were serotyped by Quellung reaction. Antimicrobial susceptibility of pneumococcal isolates was performed. NP swabs also underwent real-time PCR for pneumococcal detection and serotyping. Results Of 2989 participants, 45.3% (1354/2989) had been vaccinated with PCV13. Fifty-five (1.8%) carried pneumococcus (45 identified by culture and 10 by real-time PCR only) and PCV13 serotypes were found in eight (0.3%) participants. Almost half (22/45) of pneumococcal isolates were not susceptible to at least one of the antibiotics tested. Vaccine-type carriage among vaccinated and unvaccinated individuals was similar (0.2% vs. 0.1%, respectively). Respiratory symptoms were associated with higher odds of pneumococcal colonization (adjusted OR: 2.1; 95% CI = 1.1–3.8). Conclusions Pneumococcal carriage among non-institutionalized adults ≥65 years of age was very low. Less than 0.5% of both vaccinated and unvaccinated individuals in our study carried vaccine-type serotypes. Over a decade of PCV vaccination of children likely led to indirect effects in adults. However, given the low vaccine-type carriage rates we observed in an already high PCV13 adult coverage setting, it is difficult to attribute our findings to the direct versus indirect effects of PCV13 on adult carriage. [ABSTRACT FROM AUTHOR]
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- 2019
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48. Ratings of food courses and culinary training components in dietetics education.
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Marsico, Cheryl, Borja, Marianne E., Harrison, Lee M., and Loftus, Marie
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DIETETICS , *COLLEGE students , *NUTRITION - Abstract
Provides information on a study which compared the directors of dietetics undergraduate education programs and registered dietitians' attitudes, while discussing the importance of food courses in undergraduate dietetics education. Details on programs listed in the Directory of Dietetics Programs, 1995-1996; Decrease of food courses in relation to dietetics education; Methodology used to conduct the study; Results of the study.
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- 1998
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49. Effect of use of 13-valent pneumococcal conjugate vaccine in children on invasive pneumococcal disease in children and adults in the USA: analysis of multisite, population-based surveillance.
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Moore, Matthew R, Link-Gelles, Ruth, Schaffner, William, Lynfield, Ruth, Lexau, Catherine, Bennett, Nancy M, Petit, Susan, Zansky, Shelley M, Harrison, Lee H, Reingold, Arthur, Miller, Lisa, Scherzinger, Karen, Thomas, Ann, Farley, Monica M, Zell, Elizabeth R, JrTaylor, Thomas H, Pondo, Tracy, Rodgers, Loren, McGee, Lesley, and Beall, Bernard
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PNEUMOCOCCAL vaccines , *STREPTOCOCCUS pneumoniae , *VACCINATION of children , *BACTERIAL diseases in children , *TIME series analysis , *DISEASE incidence , *SEROTYPES - Abstract
Summary Background In 2000, seven-valent pneumococcal conjugate vaccine (PCV7) was introduced in the USA and resulted in dramatic reductions in invasive pneumococcal disease (IPD) and moderate increases in non-PCV7 type IPD. In 2010, PCV13 replaced PCV7 in the US immunisation schedule. We aimed to assess the effect of use of PCV13 in children on IPD in children and adults in the USA. Methods We used laboratory-based and population-based data on incidence of IPD from the Active Bacterial Core surveillance (part of the Centers for Disease Control and Prevention's Emerging Infections Program) in a time-series model to compare rates of IPD before and after the introduction of PCV13. Cases of IPD between July 1, 2004, and June 30, 2013, were classified as being caused by the PCV13 serotypes against which PCV7 has no effect (PCV13 minus PCV7). In a time-series model, we used an expected outcomes approach to compare the reported incidence of IPD to that which would have been expected if PCV13 had not replaced PCV7. Findings Compared with incidence expected among children younger than 5 years if PCV7 alone had been continued, incidence of IPD overall declined by 64% (95% interval estimate [95% IE] 59–68) and IPD caused by PCV13 minus PCV7 serotypes declined by 93% (91–94), by July, 2012, to June, 2013. Among adults, incidence of IPD overall also declined by 12–32% and IPD caused by PCV13 minus PCV7 type IPD declined by 58–72%, depending on age. We estimated that over 30 000 cases of IPD and 3000 deaths were averted in the first 3 years after the introduction of PCV13. Interpretation PCV13 reduced IPD across all age groups when used routinely in children in the USA. These findings provide reassurance that, similar to PCV7, PCVs with additional serotypes can also prevent transmission to unvaccinated populations. Funding Centers for Disease Control and Prevention. [ABSTRACT FROM AUTHOR]
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- 2015
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50. Use of surveillance data to estimate the effectiveness of the 7-valent conjugate pneumococcal vaccine in children less than 5 years of age over a 9 year period
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De Serres, Gaston, Pilishvili, Tamara, Link-Gelles, Ruth, Reingold, Arthur, Gershman, Kenneth, Petit, Susan, Farley, Monica M., Harrison, Lee H., Lynfield, Ruth, Bennett, Nancy M., Baumbach, Joan, Thomas, Ann, Schaffner, William, Beall, Bernard, Whitney, Cynthia, and Moore, Matthew
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DATA analysis , *ESTIMATION theory , *COST effectiveness , *PNEUMOCOCCAL vaccines , *VACCINATION of children , *COMORBIDITY , *CONFIDENCE intervals , *CASE-control method - Abstract
Abstract: Background: Case–control studies evaluating post-licensure effectiveness of conjugate vaccines can be laborious and costly. We applied an indirect cohort method to evaluate the effectiveness of seven-valent pneumococcal conjugate vaccine (PCV7) against invasive pneumococcal disease (IPD) and compared the results to the effectiveness measured using a standard case–control study conducted during the same time period. Methods: IPD cases among children 2–59 months old were identified through the Active Bacterial Core surveillance system during 2001–2009. We used logistic regression to calculate the odds ratio of vaccination (versus no vaccination) among cases (PCV7-type IPD cases) and non-cases (non-PCV7-type IPD cases), controlling for the presence of underlying conditions. Vaccine effectiveness (VE) was calculated as one minus the adjusted odds ratio. Results: Among 4225 IPD cases reported during 2001–2009, 2680 (63%) had serotype information and vaccine history. Effectiveness of ≥1 dose of PCV7 against PCV7-types was 88% (95% confidence interval (CI) 78–94%) among children with comorbid conditions and 97% (95% CI 92–98%) among healthy children. Among healthy children, VE was higher in 2001–2003 (97%, 95% CI 95–98%) compared to 2004–2009 (81%, 95% CI 64–90%). The annual estimates of VE in 2004–2009 showed great variability and wide confidence intervals due to the small number of PCV7-type cases. Conclusions: An indirect cohort design using IPD surveillance data confirms the findings of the case–control study and, therefore, appears suitable for estimating PCV7effectiveness. This method would be most useful shortly after vaccine introduction, and less useful in a setting of very high vaccine coverage and fewer vaccine-type cases. [Copyright &y& Elsevier]
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- 2012
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