9 results on '"Coelho, Luis Pedro"'
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2. Towards monitoring of antimicrobial resistance in the environment: For what reasons, how to implement it, and what are the data needs?
- Author
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Bengtsson-Palme, Johan, primary, Abramova, Anna, additional, Berendonk, Thomas U., additional, Coelho, Luis Pedro, additional, Forslund, Sofia K., additional, Gschwind, Rémi, additional, Heikinheimo, Annamari, additional, Jarquín-Díaz, Víctor Hugo, additional, Khan, Ayaz Ali, additional, Klümper, Uli, additional, Löber, Ulrike, additional, Nekoro, Marmar, additional, Osińska, Adriana D., additional, Ugarcina Perovic, Svetlana, additional, Pitkänen, Tarja, additional, Rødland, Ernst Kristian, additional, Ruppé, Etienne, additional, Wasteson, Yngvild, additional, Wester, Astrid Louise, additional, and Zahra, Rabaab, additional
- Published
- 2023
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3. Which image-based phenotypes are most promising for using AI to understand cellular functions and why?
- Author
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Lundberg, Emma, primary, Funke, Jan, additional, Uhlmann, Virginie, additional, Gerlich, Daniel, additional, Walter, Thomas, additional, Carpenter, Anne, additional, and Coelho, Luis Pedro, additional
- Published
- 2021
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4. Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome
- Author
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Salazar, Guillem, primary, Paoli, Lucas, additional, Alberti, Adriana, additional, Huerta-Cepas, Jaime, additional, Ruscheweyh, Hans-Joachim, additional, Cuenca, Miguelangel, additional, Field, Christopher M., additional, Coelho, Luis Pedro, additional, Cruaud, Corinne, additional, Engelen, Stefan, additional, Gregory, Ann C., additional, Labadie, Karine, additional, Marec, Claudie, additional, Pelletier, Eric, additional, Royo-Llonch, Marta, additional, Roux, Simon, additional, Sánchez, Pablo, additional, Uehara, Hideya, additional, Zayed, Ahmed A., additional, Zeller, Georg, additional, Carmichael, Margaux, additional, Dimier, Céline, additional, Ferland, Joannie, additional, Kandels, Stefanie, additional, Picheral, Marc, additional, Pisarev, Sergey, additional, Poulain, Julie, additional, Acinas, Silvia G., additional, Babin, Marcel, additional, Bork, Peer, additional, Bowler, Chris, additional, de Vargas, Colomban, additional, Guidi, Lionel, additional, Hingamp, Pascal, additional, Iudicone, Daniele, additional, Karp-Boss, Lee, additional, Karsenti, Eric, additional, Ogata, Hiroyuki, additional, Pesant, Stephane, additional, Speich, Sabrina, additional, Sullivan, Matthew B., additional, Wincker, Patrick, additional, Sunagawa, Shinichi, additional, Boss, Emmanuel, additional, Cochrane, Guy, additional, Follows, Michael, additional, Gorsky, Gabriel, additional, Grimsley, Nigel, additional, Jaillon, Olivier, additional, Kandels-Lewis, Stefanie, additional, Not, Fabrice, additional, Poulton, Nicole, additional, Raes, Jeroen, additional, Sardet, Christian, additional, and Stemmann, Lars, additional
- Published
- 2019
- Full Text
- View/download PDF
5. Global Trends in Marine Plankton Diversity across Kingdoms of Life
- Author
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Ibarbalz, Federico M., primary, Henry, Nicolas, additional, Brandão, Manoela C., additional, Martini, Séverine, additional, Busseni, Greta, additional, Byrne, Hannah, additional, Coelho, Luis Pedro, additional, Endo, Hisashi, additional, Gasol, Josep M., additional, Gregory, Ann C., additional, Mahé, Frédéric, additional, Rigonato, Janaina, additional, Royo-Llonch, Marta, additional, Salazar, Guillem, additional, Sanz-Sáez, Isabel, additional, Scalco, Eleonora, additional, Soviadan, Dodji, additional, Zayed, Ahmed A., additional, Zingone, Adriana, additional, Labadie, Karine, additional, Ferland, Joannie, additional, Marec, Claudie, additional, Kandels, Stefanie, additional, Picheral, Marc, additional, Dimier, Céline, additional, Poulain, Julie, additional, Pisarev, Sergey, additional, Carmichael, Margaux, additional, Pesant, Stéphane, additional, Babin, Marcel, additional, Boss, Emmanuel, additional, Iudicone, Daniele, additional, Jaillon, Olivier, additional, Acinas, Silvia G., additional, Ogata, Hiroyuki, additional, Pelletier, Eric, additional, Stemmann, Lars, additional, Sullivan, Matthew B., additional, Sunagawa, Shinichi, additional, Bopp, Laurent, additional, de Vargas, Colomban, additional, Karp-Boss, Lee, additional, Wincker, Patrick, additional, Lombard, Fabien, additional, Bowler, Chris, additional, Zinger, Lucie, additional, Bork, Peer, additional, Cochrane, Guy, additional, Follows, Mick, additional, Gorsky, Gabriel, additional, Grimsley, Nigel, additional, Guidi, Lionel, additional, Hingamp, Pascal, additional, Karsenti, Eric, additional, Not, Fabrice, additional, Poulton, Nicole, additional, Raes, Jeroen, additional, Sardet, Christian, additional, and Speich, Sabrina, additional
- Published
- 2019
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6. Global Trends in Marine Plankton Diversity across Kingdoms of Life
- Author
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80795055, Ibarbalz, Federico M., Henry, Nicolas, Brandão, Manoela C., Martini, Séverine, Busseni, Greta, Byrne, Hannah, Coelho, Luis Pedro, Endo, Hisashi, Gasol, Josep M., Gregory, Ann C., Mahé, Frédéric, Rigonato, Janaina, Royo-Llonch, Marta, Salazar, Guillem, Sanz-Sáez, Isabel, Scalco, Eleonora, Soviadan, Dodji, Zayed, Ahmed A., Zingone, Adriana, Labadie, Karine, Ferland, Joannie, Marec, Claudie, Kandels, Stefanie, Picheral, Marc, Dimier, Céline, Poulain, Julie, Pisarev, Sergey, Carmichael, Margaux, Pesant, Stéphane, Babin, Marcel, Boss, Emmanuel, Iudicone, Daniele, Jaillon, Olivier, Acinas, Silvia G., Ogata, Hiroyuki, Pelletier, Eric, Stemmann, Lars, Sullivan, Matthew B., Sunagawa, Shinichi, Bopp, Laurent, de Vargas, Colomban, Karp-Boss, Lee, Wincker, Patrick, Lombard, Fabien, Bowler, Chris, Zinger, Lucie, Bork, Peer, Cochrane, Guy, Follows, Mick, Gorsky, Gabriel, Grimsley, Nigel, Guidi, Lionel, Hingamp, Pascal, Karsenti, Eric, Not, Fabrice, Poulton, Nicole, Raes, Jeroen, Sardet, Christian, Speich, Sabrina, 80795055, Ibarbalz, Federico M., Henry, Nicolas, Brandão, Manoela C., Martini, Séverine, Busseni, Greta, Byrne, Hannah, Coelho, Luis Pedro, Endo, Hisashi, Gasol, Josep M., Gregory, Ann C., Mahé, Frédéric, Rigonato, Janaina, Royo-Llonch, Marta, Salazar, Guillem, Sanz-Sáez, Isabel, Scalco, Eleonora, Soviadan, Dodji, Zayed, Ahmed A., Zingone, Adriana, Labadie, Karine, Ferland, Joannie, Marec, Claudie, Kandels, Stefanie, Picheral, Marc, Dimier, Céline, Poulain, Julie, Pisarev, Sergey, Carmichael, Margaux, Pesant, Stéphane, Babin, Marcel, Boss, Emmanuel, Iudicone, Daniele, Jaillon, Olivier, Acinas, Silvia G., Ogata, Hiroyuki, Pelletier, Eric, Stemmann, Lars, Sullivan, Matthew B., Sunagawa, Shinichi, Bopp, Laurent, de Vargas, Colomban, Karp-Boss, Lee, Wincker, Patrick, Lombard, Fabien, Bowler, Chris, Zinger, Lucie, Bork, Peer, Cochrane, Guy, Follows, Mick, Gorsky, Gabriel, Grimsley, Nigel, Guidi, Lionel, Hingamp, Pascal, Karsenti, Eric, Not, Fabrice, Poulton, Nicole, Raes, Jeroen, Sardet, Christian, and Speich, Sabrina
- Abstract
The ocean is home to myriad small planktonic organisms that underpin the functioning of marine ecosystems. However, their spatial patterns of diversity and the underlying drivers remain poorly known, precluding projections of their responses to global changes. Here we investigate the latitudinal gradients and global predictors of plankton diversity across archaea, bacteria, eukaryotes, and major virus clades using both molecular and imaging data from Tara Oceans. We show a decline of diversity for most planktonic groups toward the poles, mainly driven by decreasing ocean temperatures. Projections into the future suggest that severe warming of the surface ocean by the end of the 21st century could lead to tropicalization of the diversity of most planktonic groups in temperate and polar regions. These changes may have multiple consequences for marine ecosystem functioning and services and are expected to be particularly significant in key areas for carbon sequestration, fisheries, and marine conservation.
- Published
- 2019
7. Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome
- Author
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Salazar, Guillem, Paoli, Lucas, Alberti, Adriana, Huerta-cepas, Jaime, Cuenca, Miguelangel, Field, Christopher M., Coelho, Luis Pedro, Cruaud, Corinne, Engelen, Stefan, Gregory, Ann C., Labadie, Karine, Marec, Claudie, Pelletier, Eric, Royo-llonch, Marta, Roux, Simon, Sánchez, Pablo, Uehara, Hideya, Zayed, Ahmed A., Zeller, Georg, Carmichael, Margaux, Dimier, Céline, Ferland, Joannie, Kandels, Stefanie, Picheral, Marc, Pisarev, Sergey, Poulain, Julie, Acinas, Silvia G., Babin, Marcel, Bork, Peer, Bowler, Chris, De Vargas, Colomban, Guidi, Lionel, Hingamp, Pascal, Iudicone, Daniele, Karp-boss, Lee, Karsenti, Eric, Ogata, Hiroyuki, Pesant, Stephane, Speich, Sabrina, Sullivan, Matthew B., Wincker, Patrick, Sunagawa, Shinichi, Salazar, Guillem, Paoli, Lucas, Alberti, Adriana, Huerta-cepas, Jaime, Cuenca, Miguelangel, Field, Christopher M., Coelho, Luis Pedro, Cruaud, Corinne, Engelen, Stefan, Gregory, Ann C., Labadie, Karine, Marec, Claudie, Pelletier, Eric, Royo-llonch, Marta, Roux, Simon, Sánchez, Pablo, Uehara, Hideya, Zayed, Ahmed A., Zeller, Georg, Carmichael, Margaux, Dimier, Céline, Ferland, Joannie, Kandels, Stefanie, Picheral, Marc, Pisarev, Sergey, Poulain, Julie, Acinas, Silvia G., Babin, Marcel, Bork, Peer, Bowler, Chris, De Vargas, Colomban, Guidi, Lionel, Hingamp, Pascal, Iudicone, Daniele, Karp-boss, Lee, Karsenti, Eric, Ogata, Hiroyuki, Pesant, Stephane, Speich, Sabrina, Sullivan, Matthew B., Wincker, Patrick, and Sunagawa, Shinichi
- Abstract
Ocean microbial communities strongly influence the biogeochemistry, food webs, and climate of our planet. Despite recent advances in understanding their taxonomic and genomic compositions, little is known about how their transcriptomes vary globally. Here, we present a dataset of 187 metatranscriptomes and 370 metagenomes from 126 globally distributed sampling stations and establish a resource of 47 million genes to study community-level transcriptomes across depth layers from pole-to-pole. We examine gene expression changes and community turnover as the underlying mechanisms shaping community transcriptomes along these axes of environmental variation and show how their individual contributions differ for multiple biogeochemically relevant processes. Furthermore, we find the relative contribution of gene expression changes to be significantly lower in polar than in non-polar waters and hypothesize that in polar regions, alterations in community activity in response to ocean warming will be driven more strongly by changes in organismal composition than by gene regulatory mechanisms.
- Published
- 2019
- Full Text
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8. Automated Image Analysis for High-Content Screening and Analysis
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Shariff, Aabid, primary, Kangas, Joshua, additional, Coelho, Luis Pedro, additional, Quinn, Shannon, additional, and Murphy, Robert F., additional
- Published
- 2010
- Full Text
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9. Structured literature image finder: Parsing text and figures in biomedical literature
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Ahmed, Amr, primary, Arnold, Andrew, additional, Coelho, Luis Pedro, additional, Kangas, Joshua, additional, Sheikh, Abdul-Saboor, additional, Xing, Eric, additional, Cohen, William, additional, and Murphy, Robert F., additional
- Published
- 2010
- Full Text
- View/download PDF
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