1. Current progress and potential opportunities to infer single-cell developmental trajectory and cell fate
- Author
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Lingfei Wang, Qian Zhang, Nikolaos Trasanidis, Qian Qin, Michael E. Vinyard, Luca Pinello, and Huidong Chen
- Subjects
0303 health sciences ,Emerging technologies ,Computer science ,Applied Mathematics ,Inference ,Cell fate determination ,Data science ,Article ,General Biochemistry, Genetics and Molecular Biology ,Computer Science Applications ,03 medical and health sciences ,0302 clinical medicine ,Developmental trajectory ,Modeling and Simulation ,Lineage tracing ,Drug Discovery ,030217 neurology & neurosurgery ,030304 developmental biology - Abstract
Rapid technological advances in transcriptomics and lineage tracing technologies provide new opportunities to understand organismal development at the single-cell level. Building on these advances, various computational methods have been proposed to infer developmental trajectories and to predict cell fate. These methods have unveiled previously uncharacterized transitional cell types and differentiation processes. Importantly, the ability to recover cell states and trajectories has been evolving hand-in-hand with new technologies and diverse experimental designs; more recent methods can capture complex trajectory topologies and infer short- and long-term cell fate dynamics. Here, we summarize and categorize the most recent and popular computational approaches for trajectory inference based on the information they leverage and describe future challenges and opportunities for the development of new methods for reconstructing differentiation trajectories and inferring cell fates.
- Published
- 2021
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