32 results on '"Nicholas H. Oberlies"'
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2. Anticancer activity of Neosetophomone B by targeting AKT/SKP2/MTH1 axis in leukemic cells
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Shilpa Kuttikrishnan, Ajaz A. Bhat, Jericha M. Mateo, Fareed Ahmad, Feras Q. Alali, Tamam El-Elimat, Nicholas H. Oberlies, Cedric J. Pearce, and Shahab Uddin
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Fungal secondary metabolites ,Natural products ,Leukemia ,Cell Survival ,Terpenes ,Biophysics ,Apoptosis ,U937 Cells ,Neosetophomone B ,Cell Biology ,Biochemistry ,Phosphoric Monoester Hydrolases ,DNA Repair Enzymes ,Humans ,K562 Cells ,Proto-Oncogene Proteins c-akt ,S-Phase Kinase-Associated Proteins ,Molecular Biology ,Signal Transduction ,Meroterpenoids - Abstract
Neosetophomone B (NSP–B), a meroterpenoid fungal secondary metabolite, was investigated for its anticancer potential in leukemic cell lines (K562 and U937). NSP-B treatment of leukemic cells suppressed cell viability by triggering apoptotic cell death. Apoptosis induced by NSP-B is triggered by mitochondrial signaling and caspase activation. Additionally, NSP-B treatment of leukemic cells causes AKT's inactivation accompanied by downregulation of SKP2 oncogene and MTH1 with a concomitant increase of p21Cip1and p27Kip1. Furthermore, NSP-B causes suppression of antiapoptotic proteins, including cIAP1, cIAP2, XIAP, survivin and BCl-XL. Overall, NSP-B reduces cell viability by mitochondrial and caspase-dependent apoptosis. The inhibition of AKT and SKP2 axis could be a promising therapeutic target for leukemia treatment. This work was supported by grant funded by the Medical Research Center (MRC), Hamad Medical Corporation, Doha, Qatar (MRC-01-21-301). The authors thank Qatar National Library for open access support of this article.
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- 2022
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3. Homoisoflavonoids from the bulbs of Bellevalia longipes and an assessment of their potential cytotoxic activity
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Tamam El-Elimat, Reema Al-Qiam, Joanna E. Burdette, Ahmed H. Al Sharie, Mohammad Al-Gharaibeh, and Nicholas H. Oberlies
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Ovarian Neoplasms ,Molecular Structure ,Antineoplastic Agents ,Apoptosis ,Plant Science ,General Medicine ,Horticulture ,Isoflavones ,Biochemistry ,Cell Line, Tumor ,Humans ,Female ,Molecular Biology ,Asparagaceae - Abstract
Seven undescribed homoisoflavonoids were identified from the bulbs of Bellevalia longipes Post (Asparagaceae) as well as thirteen known and one natural homoisoflavonoid that had been reported as a synthetic product previously. A general approach for recognizing homoisoflavonoids via NMR spectroscopy data were presented. The undescribed compounds were: 8-dehydroxy-5-O-demethyl-6-hydroxyscillapersicone, 6-methoxyscillapersicone, 5-O-demethyl-6-methoxyscillapersicone, 8-O-methylscillapersicone, 4'-O-methylscillapersicone, 4',8-O,O-dimethylscillapersicone, 3'-O-methylscillapersicone, and 3-hydroxy-desmethylophiopogonanone A. Structures were determined based on analysis of HRMS and NMR data, while absolute configurations were assigned using ECD spectroscopy. Human cancer cell lines were used to assess the cytotoxic activities of the isolated compounds, where 3-dehydroxy-3'-hydroxyeucomol showed IC
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- 2022
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4. Development of a consensus approach for botanical safety evaluation – A roundtable report
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Lara O’Keeffe, Nigel J. Walker, Catherine Mahony, Daniel S. Marsman, Nicholas H. Oberlies, Suzanne Fitzpatrick, James C. Griffiths, A. Wallace Hayes, James Edwards, Corrado L. Galli, and Amy L. Roe
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0301 basic medicine ,Consensus ,Computer science ,Process (engineering) ,Decision tree ,Context (language use) ,Toxicology ,Models, Biological ,Risk Assessment ,03 medical and health sciences ,0302 clinical medicine ,Risk Factors ,Animals ,Humans ,Weight of evidence ,Dose-Response Relationship, Drug ,Decision Trees ,General Medicine ,Toxicokinetics ,030104 developmental biology ,Risk analysis (engineering) ,Safety risk ,Consumer Product Safety ,Dietary Supplements ,Patient Safety ,Plant Preparations ,History of use ,Risk assessment ,Inclusion (education) ,030217 neurology & neurosurgery - Abstract
Botanical safety science continues to evolve as new tools for risk assessment become available alongside continual desire by consumers for "natural" botanical ingredients in consumer products. Focusing on botanical food/dietary supplements a recent international roundtable meeting brought together scientists to discuss the needs, available tools, and ongoing data gaps in the botanical safety risk assessment process. Participants discussed the key elements of botanical safety evaluations. They provided perspective on the use of a decision tree methodology to conduct a robust risk assessment and concluded with alignment on a series of consensus statements. This discussion highlighted the strengths and vulnerabilities in common assumptions, and the participants shared additional perspective to ensure that this end-to-end safety approach is sufficient, actionable and timely. Critical areas and data gaps were identified as opportunities for future focus. These include, better context on history of use, systematic assessment of weight of evidence, use of in silico approaches, inclusion of threshold of toxicological concern considerations, individual substances/matrix interactions of plant constituents, assessing botanical-drug interactions and adaptations needed to apply to in vitro and in vivo pharmacokinetic modelling of botanical constituents.
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- 2019
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5. Metabolites from the marine-facultative Aspergillus sp. MEXU 27854 and Gymnoascus hyalinosporus MEXU 29901 from Caleta Bay, Mexico
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Mario Figueroa, Steven J. Kurina, Isabel Rivero-Cruz, Nicholas H. Oberlies, Huzefa A. Raja, Manuel A. Aparicio-Cuevas, María del Carmen González, and Joanna E. Burdette
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Aspergillus ,biology ,010405 organic chemistry ,Stereochemistry ,Organic Chemistry ,Absolute configuration ,Alternariol ,Ether ,Gymnoascus ,010402 general chemistry ,biology.organism_classification ,01 natural sciences ,Biochemistry ,Caleta ,Article ,Beauvericin ,0104 chemical sciences ,chemistry.chemical_compound ,Glucoside ,chemistry ,Drug Discovery - Abstract
During our ongoing research on fungal strains from unexplored sources, the reinvestigation of the CHCl(3)−MeOH extract of the marine-facultative Aspergillus sp. MEXU 27854 yielded a new N-methyl cyclic pentapeptide (1) along with known butyrolactone II and PF1233 A. In addition, from the marine-facultative Gymnoascus hyalinosporus MEXU 29901, a new alternariol glucoside, 10-O-[β-D-(4-methoxyl-glucopyranosyl)]-4-O-methylalternariol (2) and known alternariol 4-O-methyl ether, alternariol and beauvericin, were isolated. The structures of 1 and 2 were established by detailed spectroscopic data, and their absolute configuration was ascertained by Marfey’s analysis and HRESIMS-MS/MS data for 1, and by chemical degradation and optical rotation analysis for 2.
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- 2019
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6. Mycopyranone: A 8,8ˈ-binaphthopyranone with potent anti-MRSA activity from the fungus Phialemoniopsis sp
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Nadja B. Cech, Juan J. Garcia-Salazar, José Rivera-Chávez, Nicholas H. Oberlies, Huzefa A. Raja, Cedric J. Pearce, and Lindsay K. Caesar
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biology ,Strain (chemistry) ,010405 organic chemistry ,Chemistry ,Stereochemistry ,Organic Chemistry ,Absolute configuration ,010402 general chemistry ,medicine.disease_cause ,Antimicrobial ,01 natural sciences ,Biochemistry ,Article ,0104 chemical sciences ,Staphylococcus aureus ,Axial chirality ,Drug Discovery ,biology.protein ,medicine ,FtsZ ,Chirality (chemistry) ,Two-dimensional nuclear magnetic resonance spectroscopy - Abstract
A new 8,8ˈ-binaphthopyranone (mycopyranone, 1) was isolated from a solid fermentation of Phialemoniopsis sp. (fungal strain MSX61662), and the structure was elucidated via analysis of the NMR and HRESIMS data. The axial chirality of 1 was determined to be M by ECD. The central chirality at C-4/C-4ˈ was assigned through a modified Mosher’s method, while the absolute configuration at C-3/C-3ˈ was deduced based on analysis of the 3JH-3-H-4 values and NOESY correlations. Compound 1 was evaluated for its antimicrobial properties against Staphylococcus aureus SA1199 and a clinically relevant methicillin-resistant S. aureus strain (MRSA USA300 LAC strain AH1263). Compound 1 inhibited the growth of both strains in a concentration dependent manner with IC50 values in the low μM range. Molecular docking indicated that compound 1 binds to the FtsZ (tubulin-like) protein in the same pocket as viriditoxin (2), suggesting that 1 targets bacterial cell division.
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- 2019
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7. Polychlorinated cyclopentenes from a marine derived Periconia sp. (strain G1144)
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Kristóf B. Cank, Robert A. Shepherd, Sonja L. Knowles, Manuel Rangel-Grimaldo, Huzefa A. Raja, Zoie L. Bunch, Nadja B. Cech, Christopher A. Rice, Dennis E. Kyle, Joseph O. Falkinham, Joanna E. Burdette, and Nicholas H. Oberlies
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Magnetic Resonance Spectroscopy ,Anti-Infective Agents ,Ascomycota ,Molecular Structure ,Cyclopentanes ,Plant Science ,General Medicine ,Horticulture ,Molecular Biology ,Biochemistry ,Article ,Anti-Bacterial Agents - Abstract
Studies on an organic extract of a marine fungus, Periconia sp. (strain G1144), led to the isolation of three halogenated cyclopentenes along with the known and recently reported rhytidhyester D; a series of spectrometric and spectroscopic techniques were used to elucidate these structures. Interestingly, two of these compounds represent tri-halogenated cyclopentene derivatives, which have been observed only rarely from Nature. The relative and absolute configurations of the compounds were established via mass spectrometry (MS), nuclear magnetic resonance (NMR) spectroscopy, Mosher’s esters method, optical rotation and GIAO NMR calculations, including correlation coefficient calculations and the use of both DP4+ and dJ DP4 analyses. Several of the isolated compounds were tested for activity in anti-parasitic, antimicrobial, quorum sensing inhibition, and cytotoxicity assays and were shown to be inactive.
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- 2022
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8. Non-destructive chemical analysis of a Garcinia mangostana L. (Mangosteen) herbarium voucher specimen
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A. Douglas Kinghorn, Djaja Djendoel Soejarto, Diana Kao, Nicholas H. Oberlies, and Joshua M. Henkin
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food.ingredient ,Traditional medicine ,010405 organic chemistry ,010401 analytical chemistry ,Dietary supplement ,Plant Science ,Biology ,01 natural sciences ,Biochemistry ,0104 chemical sciences ,Voucher ,Herbarium ,food ,Non destructive ,Garcinia mangostana ,Enhanced sensitivity ,Agronomy and Crop Science ,Metabolic profile ,Biotechnology - Abstract
Herbarium voucher specimens are used primarily for taxonomic confirmation. However, they also afford a record of the metabolic profile of a plant, potentially at the time it was collected, or at the very least, at the time of analysis. Even with the enhanced sensitivity of modern analytical techniques, analysis of the metabolites of a herbarium voucher requires removal and consumption of at least part of an entire specimen. We present herein a non-destructive method to analyze the metabolites of herbarium voucher specimens with the droplet-liquid microjunction-surface sampling probe (droplet probe) coupled to ultra-performance liquid chromatography and highresolution mass spectrometry. As proof of concept, a herbarium voucher specimen of Garcinia mangostana (mangosteen) was utilized due to the well-characterized xanthones biosynthesized by this plant, which are of interest as potential anticancer agents. Also, the juice of the fruits of this plant is used widely in the United States and in other countries as a botanical dietary supplement. Metabolite profiles of the sampled surfaces were compared to a subset of xanthone standards. Using this innovative method on the herbarium voucher specimen, we were able to readily identify cytotoxic prenylated xanthones while maintaining the integrity of the entire specimen.
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- 2018
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9. Cytotoxic homoisoflavonoids from the bulbs of Bellevalia flexuosa
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Maram B. Alhawarri, Mohammad Al-Gharaibeh, Nicholas H. Oberlies, Feras Q. Alali, Joanna E. Burdette, Tamam El-Elimat, José Rivera-Chávez, and Austin A. Czarnecki
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Bellevalia flexuosa ,Stereochemistry ,Cytotoxicity ,Bulbs ,Homoisoflavonoids ,Bellevalia ,Plant Roots ,01 natural sciences ,Article ,chemistry.chemical_compound ,Cell Line, Tumor ,Drug Discovery ,Humans ,Cytotoxic T cell ,Absolute configuration ,IC50 ,Asparagaceae ,Pharmacology ,Chloroform ,Molecular Structure ,Human cancer cell lines ,biology ,Plant Extracts ,010405 organic chemistry ,General Medicine ,biology.organism_classification ,Antineoplastic Agents, Phytogenic ,Isoflavones ,0104 chemical sciences ,010404 medicinal & biomolecular chemistry ,chemistry ,Cell culture - Abstract
Four new homoisoflavonoids, 7-O-methyl-8-demethoxy-3′-hydroxy-3,9-dihydropunctatin (4), 6-hydroxy-8-demethoxy-4′-O-methyl-3,9-dihydropunctatin (8), 7,4′-O-dimethyl-8-demethoxy-3,3′-dihydroxy-3,9-dihydropunctatin (13), and 7-O-methyl-3-hyroxy-3,9-dihydropunctatin (14) were identified from a chloroform extract of the bulbs of Bellevalia flexuosa, along with 13 known analogues. The structures were determined by analysis of HRMS and NMR data, while ECD spectroscopy enabled the assignment of the absolute configurations of the new compounds 4, 8, 13 and 16. The cytotoxic activities of the isolated compounds (1–17) were evaluated using a panel of human cancer cell lines. Compounds 2 and 7 were the most potent against the MDA-MB-435 (melanoma) cancer cell line with IC50 values of 1.6 and 2.0 μM, respectively, and were essentially equipotent against the OVCAR3 (ovarian) cancer cell line with IC50 values of 9.5 and 10.8 μM, respectively. However, compound 7, with an IC50 value of 3.6 μM, was the most potent against the MDA-MB-231 (breast) cancer cell line. This research was supported, in part, by the Deanship of Research, Jordan University of Science and Technology , Irbid, Jordan (Grant No. 284/2017 ) and via program project grant P01 CA125066 from the National Cancer Institute / National Institutes of Health , Bethesda, MD, USA. Appendix A Scopus
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- 2018
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10. Droplet probe: A non-destructive residue analysis of Wari ceramics from the imperial heartland
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Nicholas H. Oberlies, Joshua M. Henkin, Kristof Cank, and Anita G. Cook
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Archeology ,Residue (complex analysis) ,Sherd ,Non destructive ,Aurantiamide benzoate ,visual_art ,Aurantiamide acetate ,visual_art.visual_art_medium ,Mineralogy ,Ceramic ,Mass spectrometry - Abstract
Analyzing ceramics from ancient cultures, many of which are degraded or damaged from hundreds or thousands of years of weathering, present some unique challenges. Mass spectrometry coupled with separation techniques, such as liquid chromatography, provides a means to analyze residues on artifacts. However, most well-known analytical techniques usually cause at least some amount of destruction of the material during the preparation phase, leading to the loss of valuable spatial information and possibly hampering future analyses. In this study of ancient Andean sherds, we present a test case of using a non-destructive LC-MS technique, termed the droplet-liquid microjunction-surface sampling probe (i.e., droplet probe), for studying the chemistry of residues on ceramics. This method combines the benefits of mass spectrometry with the collection of chromatographic data, the combination of which affords a wealth of data. Three naturally occurring plant secondary metabolites, aurantiamide acetate (1), aurantiamide benzoate (2), and aurantiamide (3) were identified on the surface of a vessel and a spoon sherd from the central highlands of Peru. Fragmentation patterns, mass defect filtering and comparison to an in-house standard were used to further confirm the identification of these metabolites. The droplet probe allows for the identification of the chemistry of residues on archeological materials, and in turn, such data allow inferences regarding the potential original or final use of these artifacts.
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- 2021
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11. Three diketomorpholines from a Penicillium sp. (strain G1071)
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Scott E. Hemby, Joseph O. Falkinham, Joanna E. Burdette, Nicholas H. Oberlies, Zeinab Y. Al Subeh, and Huzefa A. Raja
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0106 biological sciences ,Magnetic Resonance Spectroscopy ,Stereochemistry ,Structural diversity ,Plant Science ,Horticulture ,Mass spectrometry ,01 natural sciences ,Biochemistry ,Mass Spectrometry ,Article ,Molecular Biology ,Molecular Structure ,Strain (chemistry) ,biology ,010405 organic chemistry ,Chemistry ,Fungi ,Penicillium ,General Medicine ,biology.organism_classification ,Nmr data ,0104 chemical sciences ,Fungal strain ,010606 plant biology & botany - Abstract
Three previously undescribed diketomorpholine natural products, along with the known phenalenones, herqueinone and norherqueinone, were isolated from the mycoparasitic fungal strain G1071, which was identified as a Penicillium sp. in the section Sclerotiora. The structures were established by analyzing NMR data and mass spectrometry fragmentation patterns. The absolute configurations of deacetyl-javanicunine A, javanicunine C, and javanicunine D, were assigned by examining ECD spectra and Marfey's analysis. The structural diversity generated by this fungal strain was interesting, as only a few diketomorpholines (~17) have been reported from nature.
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- 2021
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12. Chemoselective fluorination and chemoinformatic analysis of griseofulvin: Natural vs fluorinated fungal metabolites
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Austin A. Czarnecki, Joanna E. Burdette, Nicholas H. Oberlies, Cedric J. Pearce, Noemi D. Paguigan, Stephen J. Polyak, Huzefa A. Raja, Mohammed H. Al-Huniti, Mitchell P. Croatt, José L. Medina-Franco, and Mariana González-Medina
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Antifungal ,Antifungal Agents ,Halogenation ,Stereochemistry ,medicine.drug_class ,Clinical Biochemistry ,Antifungal drug ,Pharmaceutical Science ,Antineoplastic Agents ,Microsporum gypseum ,Single step ,Microbial Sensitivity Tests ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Article ,Griseofulvin ,Xylaria cubensis ,Structure-Activity Relationship ,chemistry.chemical_compound ,Drug Discovery ,Tumor Cells, Cultured ,medicine ,Humans ,Microsporum ,Organic chemistry ,Molecular Biology ,Cell Proliferation ,Principal Component Analysis ,Dose-Response Relationship, Drug ,Molecular Structure ,Xylariales ,010405 organic chemistry ,Chemistry ,Organic Chemistry ,Chemical space ,0104 chemical sciences ,Molecular Medicine ,Drug Screening Assays, Antitumor ,Selectfluor ,Medical Informatics - Abstract
[2017-2018 UNCG University Libraries Open Access Publishing Fund Grant Winner.] Griseofulvin is a fungal metabolite and antifungal drug used for the treatment of dermatophytosis in both humans and animals. Recently, griseofulvin and its analogues have attracted renewed attention due to reports of their potential anticancer effects. In this study griseofulvin (1) and related analogues (2–6, with 4 being new to literature) were isolated from Xylaria cubensis. Six fluorinated analogues (7–12) were synthesized, each in a single step using the isolated natural products and Selectflour, so as to examine the effects of fluorine incorporation on the bioactivities of this structural class. The isolated and synthesized compounds were screened for activity against a panel of cancer cell lines (MDA-MB-435, MDA-MB-231, OVCAR3, and Huh7.5.1) and for antifungal activity against Microsporum gypseum. A comparison of the chemical space occupied by the natural and fluorinated analogues was carried out by using principal component analysis, documenting that the isolated and fluorinated analogues occupy complementary regions of chemical space. However, the most active compounds, including two fluorinated derivatives, were centered around the chemical space that was occupied by the parent compound, griseofulvin, suggesting that modifications must preserve certain attributes of griseofulvin to conserve its activity.
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- 2017
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13. Secondary metabolites from the leaves of the medicinal plant goldenseal ( Hydrastis canadensis )
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Martha Leyte-Lugo, Nadja B. Cech, José Rivera-Chávez, Daniel H. Foil, Emily R. Britton, Nicholas H. Oberlies, Adam R. Brown, and Daniel A. Todd
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Traditional medicine ,biology ,010405 organic chemistry ,010401 analytical chemistry ,Ranunculaceae ,Plant Science ,medicine.disease_cause ,biology.organism_classification ,Mass spectrometry ,01 natural sciences ,Biochemistry ,Article ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Staphylococcus aureus ,High mass ,medicine ,Efflux ,Agronomy and Crop Science ,IC50 ,Goldenseal ,Biotechnology ,Benzoic acid - Abstract
The study presented herein constitutes an extensive investigation of constituents in Hydrastis canadensis L. (Ranunculaceae) leaves. It describes the isolation and identification of two previously unknown compounds, 3,4-dimethoxy-2-(methoxycarbonyl)benzoic acid (1) and 3,5,3′-trihydroxy-7,4′-dimethoxy-6,8-C-dimethyl-flavone (2), along with the known compounds (±)-chilenine (3), (2R)-5,4′-dihydroxy-6-C-methyl-7-methoxy-flavanone (4), 5,4′-dihydroxy-6,8-di-C-methyl-7-methoxy-flavanone (5), noroxyhydrastinine (6), oxyhydrastinine (7) and 4′,5′-dimethoxy-4-methyl-3′-oxo-(1,2,5,6-tetrahydro-4H-1,3-dioxolo-[4′,5′:4,5]-benzo[1,2-e]-1,2-oxazocin)-2-spiro-1′-phtalan (8). Compounds 3-8 have been reported from other sources, but this is the first report of their presence in H. canadensis extracts. A mass spectrometry based assay was employed to demonstrate bacterial efflux pump inhibitory activity against Staphylococcus aureus for 2, with an IC50 value of 180 ± 6 μM. This activity in addition to that of other bioactive compounds such as flavonoids and alkaloids, may explain the purported efficacy of H. canadensis for treatment of bacterial infections. Finally, this report includes high mass accuracy fragmentation spectra for all compounds investigated herein which were uploaded into the Global Natural Products Social molecular networking library and can be used to facilitate their future identification in H. canadensis or other botanicals.
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- 2017
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14. DNA barcoding for identification of consumer-relevant mushrooms: A partial solution for product certification?
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Nicholas H. Oberlies, Huzefa A. Raja, Jason G. Little, and Timothy R. Baker
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0106 biological sciences ,0301 basic medicine ,Biology ,Barcode ,01 natural sciences ,DNA barcoding ,law.invention ,Analytical Chemistry ,03 medical and health sciences ,law ,DNA, Ribosomal Spacer ,Edible mushrooms ,DNA Barcoding, Taxonomic ,Internal transcribed spacer ,Phylogeny ,Authenticate sequences ,Phylogenetic tree ,business.industry ,Internal Transcribed Spacer region ,Fungi ,Sequence Analysis, DNA ,General Medicine ,Ribosomal RNA ,Dietary supplements ,Biotechnology ,Product certification ,030104 developmental biology ,GenBank ,Medicinal mushrooms ,Identification (biology) ,Agaricales ,Sanger DNA sequencing ,business ,010606 plant biology & botany ,Food Science - Abstract
One challenge in the dietary supplement industry is confirmation of species identity for processed raw materials, i.e. those modified by milling, drying, or extraction, which move through a multilevel supply chain before reaching the finished product. This is particularly difficult for samples containing fungal mycelia, where processing removes morphological characteristics, such that they do not present sufficient variation to differentiate species by traditional techniques. To address this issue, we have demonstrated the utility of DNA barcoding to verify the taxonomic identity of fungi found commonly in the food and dietary supplement industry; such data are critical for protecting consumer health, by assuring both safety and quality. By using DNA barcoding of nuclear ribosomal internal transcribed spacer (ITS) of the rRNA gene with fungal specific ITS primers, ITS barcodes were generated for 33 representative fungal samples, all of which could be used by consumers for food and/or dietary supplement purposes. In the majority of cases, we were able to sequence the ITS region from powdered mycelium samples, grocery store mushrooms, and capsules from commercial dietary supplements. After generating ITS barcodes utilizing standard procedures accepted by the Consortium for the Barcode of Life, we tested their utility by performing a BLAST search against authenticate published ITS sequences in GenBank. In some cases, we also downloaded published, homologous sequences of the ITS region of fungi inspected in this study and examined the phylogenetic relationships of barcoded fungal species in light of modern taxonomic and phylogenetic studies. We anticipate that these data will motivate discussions on DNA barcoding based species identification as applied to the verification/certification of mushroom-containing dietary supplements.
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- 2017
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15. Coumarins, dihydroisocoumarins, a dibenzo-α-pyrone, a meroterpenoid, and a merodrimane from Talaromyces amestolkiae
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Mario Figueroa, Soraya Alnabulsi, Tamam El-Elimat, Nicholas H. Oberlies, and Huzefa A. Raja
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Trichocomaceae ,biology ,010405 organic chemistry ,Chemistry ,Stereochemistry ,Organic Chemistry ,Eurotiales ,010402 general chemistry ,Antimicrobial ,biology.organism_classification ,01 natural sciences ,Biochemistry ,Talaromyces amestolkiae ,Pyrone ,0104 chemical sciences ,chemistry.chemical_compound ,Fresh water ,Drug Discovery - Abstract
Chemical investigation of an organic extract of a fungus isolated from submerged wood collected from fresh water (strain G173), identified as a Talaromyces amestolkiae (Eurotiales; Trichocomaceae), led to the isolation of three coumarins, three dihydroisocoumarins, a dibenzo-α-pyrone, a meroterpenoid, and a merodrimane. Three of the isolated compounds, namely 7-chloropestalasin A (3), 4-hydroxyaspergillumarin (6), and ent-thailandolide B (9) were new. The structures were elucidated using a combination of spectroscopic and spectrometric techniques. The absolute configurations of 2, 3, 5, and 6 were established via a modified Mosher’s ester method, whereas for 9 a combination of TDDFT ECD and ORD calculations were employed. Compounds 1–9 were evaluated for antimicrobial activity against a group of bacteria and fungi.
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- 2021
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16. Capturing the antimicrobial profile of Rosmarinus officinalis against methicillin-resistant Staphylococcus aureus (MRSA) with bioassay-guided fractionation and bioinformatics
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Nadja B. Cech, Nicholas H. Oberlies, Derick D. Jones, Sonja L. Knowles, Joëlle Houriet, William J. Crandall, and Manead Khin
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Methicillin-Resistant Staphylococcus aureus ,Clinical Biochemistry ,Pharmaceutical Science ,Microbial Sensitivity Tests ,Fractionation ,Bioinformatics ,medicine.disease_cause ,01 natural sciences ,Article ,Rosmarinus ,Analytical Chemistry ,chemistry.chemical_compound ,Anti-Infective Agents ,Ursolic acid ,Drug Discovery ,medicine ,Humans ,Oleanolic acid ,Spectroscopy ,biology ,Plant Extracts ,010405 organic chemistry ,010401 analytical chemistry ,Computational Biology ,Antimicrobial ,biology.organism_classification ,Anti-Bacterial Agents ,0104 chemical sciences ,chemistry ,Staphylococcus aureus ,Genkwanin ,Officinalis ,Biological Assay - Abstract
Natural products have been a primary source of medicines throughout the history of human existence. It is estimated that close to 70% of small molecule pharmaceuticals on the market are derived from natural products. With increasing antibiotic resistance, natural products remain an important source for the discovery of novel antimicrobial compounds. The plant rosemary (Rosmarinus officinalis), has been widely and commonly used as a food preservative due to its antimicrobial potential. To evaluate the antimicrobial profile of this plant, we used bioassay-guided fractionation and bioinformatics approaches. Through bioassay-guided fractionation, we tested in vitro activities of a R. officinalis extract and fractions thereof, as well as pure compounds micromeric acid (1), oleanolic acid (2), and ursolic acid (3) against methicillin-resistant Staphylococcus aureus (MRSA). Compounds 1 and 3 showed complete inhibition of MRSA (with MIC values of 32 μg/mL and 8 μg/mL, respectively) while compound 2 displayed only partial inhibition (MIC > 64 μg/mL). In addition, we utilized orthogonal partial least square-discriminant analysis (OPLS-DA) and selectivity ratio (SR) analysis to correlate the isolated compounds 1–3 with the observed antimicrobial activity, as well as to identify antimicrobials present in trace quantities. For mass spectrometry (MS) data collected in the negative ionization mode, compound 1 was the most positively correlated with activity, while for MS data collected in the positive ion mode, compounds 2-3 had the highest positive correlation. Using the bioinformatics approaches, we highlighted additional antimicrobials associated with the antimicrobial activity of R. officinalis, including genkwanin (4), rosmadial (5a) and/or 16-hydroxyrosmadial (5b), rosmanol (6), and hesperetin (7). Compounds 1–3 resulting from the bioassay-guided fractionation were identified by MS-MS fragmentation patterns and (1)H NMR spectra. Among the compounds highlighted by the biochemical analysis, compound 6 was identified by comparison with its commercial standard by employed ultra-performance liquid chromatography-high resolution mass spectrometry (UHPLC-HRMS), while 4, 5a-b and 7 were putatively identified based on MS data and in comparison, with the literature. This is the first reported antimicrobial activity of micromeric acid (1) against MRSA.
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- 2021
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17. Cytotoxic and antimicrobial drimane meroterpenoids from a fungus of the Stictidaceae (Ostropales, Ascomycota)
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Joseph O. Falkinham, Cedric J. Pearce, Steven J. Kurina, Huzefa A. Raja, Mario Augustinović, Joanna E. Burdette, Laura Flores-Bocanegra, Nicholas H. Oberlies, and Amanda C Maldonado
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genetic structures ,biology ,Ascomycota ,Strain (chemistry) ,010405 organic chemistry ,Chemistry ,Stereochemistry ,Organic Chemistry ,Absolute configuration ,Fungus ,010402 general chemistry ,Antimicrobial ,biology.organism_classification ,01 natural sciences ,Biochemistry ,0104 chemical sciences ,Stictidaceae ,Drug Discovery ,Cytotoxicity ,Two-dimensional nuclear magnetic resonance spectroscopy - Abstract
As part of our ongoing research on bioactive fungal metabolites, two new metabolites were isolated from a fungus of the Stictidaceae (strain MSX62440), dasyscyphins F and G (1 and 3), along with the known dasyscyphin C (2). Compound 1 was characterized by HRMS and 1D and 2D NMR data, and its absolute configuration established by ECD spectroscopy. A structural revision of dasyscyphin C (2) was based on NMR data and verified by ECD calculations. Compound 3 was previously reported as a synthetic product, and its identity confirmed by comparison with NMR data in the literature, and its absolute configuration was established by ECD spectroscopy. Compounds 1 and 2 showed moderate cytotoxicity and antimicrobial activity.
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- 2021
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18. Antimicrobial fungal endophytes from the botanical medicine goldenseal ( Hydrastis canadensis )
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Nadja B. Cech, Amninder Kaur, Nicholas H. Oberlies, Joseph M. Egan, Joshua J. Kellogg, and Huzefa A. Raja
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0301 basic medicine ,biology ,010405 organic chemistry ,Metabolite ,Fungal endophyte ,food and beverages ,Antimicrobial compound ,Ranunculaceae ,Plant Science ,biology.organism_classification ,Antimicrobial ,Alternaria ,01 natural sciences ,Biochemistry ,0104 chemical sciences ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,chemistry ,Botany ,Alternariol monomethyl ether ,Agronomy and Crop Science ,Goldenseal ,Biotechnology - Abstract
The potential of fungal endophytes to alter or contribute to plant chemistry and biology has been the topic of a great deal of recent interest. For plants that are used medicinally, it has been proposed that endophytes might play an important role in biological activity. With this study, we sought to identify antimicrobial fungal endophytes from the medicinal plant goldenseal (Hydrastis canadensis L., Ranunculaceae), a plant used in traditional medicine to treat infection. A total of 23 fungal cultures were obtained from surface-sterilized samples of H. canadensis roots, leaves and seeds. Eleven secondary metabolites were isolated from these fungal endophytes, five of which had reported antimicrobial activity. Hydrastis canadensis plant material was then analyzed for the presence of fungal metabolites using liquid chromatography coupled to high resolving power mass spectrometry. The antimicrobial compound alternariol monomethyl ether was detected both as a metabolite of the fungal endophyte Alternaria spp. isolated from H. canadensis seeds, and as a component of an extract from the H. canadensis seed material. Notably, fungi of the Alternaria genus were isolated from three separate accessions of H. canadensis plant material collected in a time period spanning 5 years. The concentration of alternariol monomethyl ether (991 mg/kg in dry seed material) was in a similar range to that previously reported for metabolites of ecologically important fungal endophytes. The seed extracts themselves, however, did not possess antimicrobial activity.
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- 2016
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19. Pathogenic Allodiploid Hybrids of Aspergillus Fungi
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Gustavo H. Goldman, Fausto Almeida, Sonja L. Knowles, Rafael Wesley Bastos, Laure Nicolas Annick Ries, Antonis Rokas, Nicholas H. Oberlies, Lilian Pereira Silva, Abigail L. Lind, Thaila Fernanda dos Reis, Jacob L. Steenwyk, Fernando Rodrigues, Huzefa A. Raja, André Moreira Pessoni, Thais Fernanda de Campos Fraga da Silva, Vania L. D. Bonato, and Katrien Lagrou
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0301 basic medicine ,Genetics ,Aspergillus ,Species complex ,biology ,Ascomycota ,Virulence ,Genomics ,biology.organism_classification ,Diploidy ,Phenotype ,Article ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Eurotiomycetes ,Aspergillus nidulans ,Hybridization, Genetic ,Genome, Fungal ,General Agricultural and Biological Sciences ,030217 neurology & neurosurgery ,Hybrid - Abstract
Summary Interspecific hybridization substantially alters genotypes and phenotypes and can give rise to new lineages. Hybrid isolates that differ from their parental species in infection-relevant traits have been observed in several human-pathogenic yeasts and plant-pathogenic filamentous fungi but have yet to be found in human-pathogenic filamentous fungi. We discovered 6 clinical isolates from patients with aspergillosis originally identified as Aspergillus nidulans (section Nidulantes) that are actually allodiploid hybrids formed by the fusion of Aspergillus spinulosporus with an unknown close relative of Aspergillus quadrilineatus, both in section Nidulantes. Evolutionary genomic analyses revealed that these isolates belong to Aspergillus latus, an allodiploid hybrid species. Characterization of diverse infection-relevant traits further showed that A. latus hybrid isolates are genomically and phenotypically heterogeneous but also differ from A. nidulans, A. spinulosporus, and A. quadrilineatus. These results suggest that allodiploid hybridization contributes to the genomic and phenotypic diversity of filamentous fungal pathogens of humans.
- Published
- 2020
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20. P83 - The natural product kratom is a potential precipitant of pharmacokinetic interactions with common drugs of abuse
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Mary F. Paine, Dan-Dan Tian, Nadja B. Cech, Rakshit S. Tanna, James Nguyen, and Nicholas H. Oberlies
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Pharmacology ,chemistry.chemical_compound ,Drugs of abuse ,Natural product ,Pharmacokinetics ,chemistry ,business.industry ,Pharmaceutical Science ,Medicine ,Pharmacology (medical) ,business - Published
- 2020
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21. Spiroscytalin, a new tetramic acid and other metabolites of mixed biogenesis from Scytalidium cuboideum
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Arlene A. Sy-Cordero, Nicholas H. Oberlies, Maria Elena Meza Avina, Cedric J. Pearce, Mitchell P. Croatt, Audrey F. Adcock, Mario Figueroa, Huzefa A. Raja, Mansukh C. Wani, and David J. Kroll
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Circular dichroism ,biology ,Chemistry ,Stereochemistry ,Organic Chemistry ,Absolute configuration ,Nuclear magnetic resonance spectroscopy ,Mass spectrometry ,biology.organism_classification ,Biochemistry ,Article ,Drug Discovery ,Candida albicans ,Cytotoxicity ,Antibacterial activity ,Two-dimensional nuclear magnetic resonance spectroscopy - Abstract
Spiroscytalin (1), a new tetramic acid that possesses an uncommon spiro-ring fusion between a polyketide-derived octalin ring system and a 2,4-pyrrolidinedione, along with two known compounds, leporin B (2) and purpactin A (3), were isolated from a solid phase culture of the fungus Scytalidium cuboideum (MSX 68345). The molecular connectivity of 1–3 was determined using NMR spectroscopy and mass spectrometry. The relative configurations of 1 and 2 were determined by NOESY experiments. The absolute configuration of 1 was determined by electronic circular dichroism (ECD) via a combination of experimental measurements and computational calculations. While leporin B was known, it displayed activities that had not been reported previously, including cytotoxicity against three human tumor cell lines and antibacterial activity against Candida albicans and Staphylococcus aureus.
- Published
- 2015
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22. Isolation, semisynthesis, covalent docking and transforming growth factor beta-activated kinase 1 (TAK1)-inhibitory activities of (5Z)-7-oxozeaenol analogues
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Nicholas H. Oberlies, Patricia H. Reggio, Tamam El-Elimat, Mitchell P. Croatt, Cedric J. Pearce, Dow P. Hurst, and Lara Fakhouri
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Stereochemistry ,Clinical Biochemistry ,Pharmaceutical Science ,Biochemistry ,Molecular Docking Simulation ,Article ,Inhibitory Concentration 50 ,Drug Discovery ,Humans ,Binding site ,Protein Kinase Inhibitors ,Molecular Biology ,Binding Sites ,MAP kinase kinase kinase ,biology ,Kinase ,Chemistry ,Organic Chemistry ,Transforming growth factor beta ,MAP Kinase Kinase Kinases ,Semisynthesis ,Protein Structure, Tertiary ,Covalent bond ,Docking (molecular) ,biology.protein ,Zearalenone ,Molecular Medicine - Abstract
(5Z)-7-Oxozeanol and related analogues were isolated and screened to explore their activity as TAK1 inhibitors. Seven analogues were synthesized and more than a score of natural products isolated that examined the role that different areas of the molecule contribute to TAK1 inhibition. A novel nonaromatic difluoro-derivative was synthesized that had similar potency compared to the lead. This is the first example of a nonaromatic compound in this class to have TAK1 inhibition. Covalent docking for the isolated and synthesized analogues was carried out and found a strong correlation between the observed activities and the calculated binding.
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- 2015
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23. Comparison of the chemistry and diversity of endophytes isolated from wild-harvested and greenhouse-cultivated yerba mansa (Anemopsis californica)
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Nadja B. Cech, Nicholas H. Oberlies, Huzefa A. Raja, Joseph M. Egan, Amninder Kaur, Tamam El-Elimat, Daniel A. Todd, RO Bussey, and Tyler N. Graf
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Cylindrocarpon ,Saururaceae ,education.field_of_study ,Natural product ,biology ,fungi ,Population ,Plant Science ,Fungus ,biology.organism_classification ,Antimicrobial ,Biochemistry ,Plant use of endophytic fungi in defense ,chemistry.chemical_compound ,Anemopsis ,chemistry ,Botany ,education ,Agronomy and Crop Science ,Biotechnology - Abstract
With this study, we explored the identity and chemistry of fungal endophytes from the roots of yerba mansa [Anemopsis californica (Nutt.) Hook. & Arn. (Saururaceae)], a botanical traditionally used to treat infection. We compared the diversity of fungal endophytes isolated from a wild-harvested A. californica population, and those from plants cultivated for one year in a greenhouse environment. The wild-harvested population yielded thirteen fungal strains (eleven unique genotypes). Of the extracts prepared from these fungi, four inhibited growth of Staphylococcus aureus by >25% at 20 µg/mL, and three inhibited growth of Pseudomonas aeruginosa by =20% at 200 µg/mL. By comparison, A. californica roots after one year of cultivation in the greenhouse produced only two unique genotypes, neither of which displayed significant antimicrobial activity. The fungus Chaetomium cupreum isolated from wild-harvested A. californica yielded a new antimicrobial spirolactone, chaetocuprum (1). An additional 14 known compounds were identified using LC–MS dereplication of the various fungal endophytes. This study provides new insights into the identity and chemistry of A. californica fungal endophytes, and demonstrates the importance of considering growing conditions when pursuing natural product drug discovery from endophytic fungi.
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- 2015
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24. Bioactive withanolides from Withania obtusifolia
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Khaled Tawaha, Feras Q. Alali, Mohammad Gharaibah, Nicholas H. Oberlies, Tamam El-Elimat, Steven M. Swanson, Mario Figueroa, Araceli Sánchez, Joseph O. Falkinham, Marisa Cabeza, Ahmad S. Alkofahi, and Chiraz Soumia M. Amrine
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biology ,Traditional medicine ,Withania ,Dehydrogenase ,Plant Science ,Pharmacology ,biology.organism_classification ,Antimicrobial ,Biochemistry ,In vitro ,chemistry.chemical_compound ,chemistry ,Cell culture ,Withaferin A ,Cytotoxicity ,Agronomy and Crop Science ,Bacteria ,Biotechnology - Abstract
Seven withanolides were isolated from the leaves of Withania obtusifolia. Of these, one was new [obtusifonolide (1)], five were new to the species [sitoindoside IX (2), 6a-chloro-5s-hydroxy withaferin A (3), isowithanone (4), 2,3-dihydro-3-ethoxywithaferin A (5), and daturataturin A (6)], and one was reported previously from W. obtusifolia [withaferin A (7)]. The structures were elucidated using a set of spectroscopic and spectrometric techniques. Compounds (1–7) were evaluated for cytotoxicity against a human cancer cell panel and for antimicrobial activity in an array of bacteria and fungi. Compound 7 showed cytotoxic activity against the MDA-MB-435 (human melanoma) and SW-620 (human colon cancer) cell lines with IC50 values of 1.7 and 0.3 µM, respectively. The in vitro activity of 7 on 17s-hydroxysteroid dehydrogenase and 5a-reductase was also investigated.
- Published
- 2014
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25. Semisynthesis, cytotoxicity, antiviral activity, and drug interaction liability of 7-O-methylated analogues of flavonolignans from milk thistle
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Hanan S. Althagafy, Mary F. Paine, Jessica Wagoner, Tyler N. Graf, Nicholas H. Oberlies, Arlene A. Sy-Cordero, Brandon T. Gufford, Stephen J. Polyak, and Mitchell P. Croatt
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Cell Survival ,Metabolite ,Clinical Biochemistry ,Pharmaceutical Science ,Hepacivirus ,Pharmacology ,Antiviral Agents ,Methylation ,Biochemistry ,Article ,Cell Line ,Silybum marianum ,Flavonolignans ,chemistry.chemical_compound ,Cytochrome P-450 Enzyme System ,Microsomes ,Drug Discovery ,Flavonolignan ,Humans ,Milk Thistle ,Drug Interactions ,Glucuronosyltransferase ,Cytotoxicity ,Molecular Biology ,Cytochrome P-450 CYP2C9 ,biology ,Organic Chemistry ,biology.organism_classification ,Hepatitis C ,Semisynthesis ,chemistry ,Hepatoprotection ,Molecular Medicine ,Aryl Hydrocarbon Hydroxylases ,Silymarin - Abstract
Silymarin, an extract of the seeds of milk thistle (Silybum marianum), is used as an herbal remedy, particularly for hepatoprotection. The main chemical constituents in silymarin are seven flavonolignans. Recent studies explored the non-selective methylation of one flavonolignan, silybin B, and then tested those analogues for cytotoxicity and inhibition of both cytochrome P450 (CYP) 2C9 activity in human liver microsomes and hepatitis C virus infection in a human hepatoma (Huh7.5.1) cell line. In general, enhanced bioactivity was observed with the analogues. To further probe the biological consequences of methylation of the seven major flavonolignans, a series of 7-O-methylflavonolignans were generated. Optimization of the reaction conditions permitted selective methylation at the phenol in the 7-position in the presence of each metabolite’s 4–5 other phenolic and/or alcoholic positions without the use of protecting groups. These 7-O-methylated analogues, in parallel with the corresponding parent compounds, were evaluated for cytotoxicity against Huh7.5.1 cells; in all cases the monomethylated analogues were more cytotoxic than the parent compounds. Moreover, parent compounds that were relatively non-toxic and inactive or weak inhibitors of hepatitis C virus infection had enhanced cytotoxicity and anti-HCV activity upon 7-O-methylation. Also, the compounds were tested for inhibition of major drug metabolizing enzymes (CYP2C9, CYP3A4/5, UDP-glucuronsyltransferases) in pooled human liver or intestinal microsomes. Methylation of flavonolignans differentially modified inhibitory potency, with compounds demonstrating both increased and decreased potency depending upon the compound tested and the enzyme system investigated. In total, these data indicated that monomethylation modulates the cytotoxic, antiviral, and drug interaction potential of silymarin flavonolignans.
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- 2013
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26. Enhanced bioactivity of silybin B methylation products
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Mary F. Paine, David J. Kroll, Tyler N. Graf, Mansukh C. Wani, Scott J. Brantley, Nicholas H. Oberlies, Rajesh Agarwal, Arlene A. Sy-Cordero, Stephen J. Polyak, and Scott P. Runyon
- Subjects
Stereochemistry ,Clinical Biochemistry ,Glucuronidation ,Pharmaceutical Science ,Silibinin ,Hepacivirus ,Microbial Sensitivity Tests ,Antiviral Agents ,Methylation ,Biochemistry ,Article ,Silybum marianum ,Flavonolignans ,Structure-Activity Relationship ,Dimethyl sulfate ,chemistry.chemical_compound ,In vivo ,Drug Discovery ,Humans ,Structure–activity relationship ,Enzyme Inhibitors ,Molecular Biology ,Cell Proliferation ,Cytochrome P-450 CYP2C9 ,Dose-Response Relationship, Drug ,Molecular Structure ,biology ,Organic Chemistry ,biology.organism_classification ,Antineoplastic Agents, Phytogenic ,chemistry ,Silybin ,Microsomes, Liver ,Microsome ,Molecular Medicine ,Aryl Hydrocarbon Hydroxylases ,Drug Screening Assays, Antitumor ,Silymarin - Abstract
Flavonolignans from milk thistle (Silybum marianum) have been investigated for their cellular modulatory properties, including cancer chemoprevention and hepatoprotection, as an extract (silymarin), as partially purified mixtures (silibinin and isosilibinin), and as pure compounds (a series of seven isomers). One challenge with the use of these compounds in vivo is their relatively short half-life due to conjugation, particularly glucuronidation. In an attempt to generate analogues with improved in vivo properties, particularly reduced metabolic liability, a semi-synthetic series was prepared in which the hydroxy groups of silybin B were alkylated. A total of five methylated analogues of silybin B were synthesized using standard alkylation conditions (dimethyl sulfate and potassium carbonate in acetone), purified using preparative HPLC, and elucidated via spectroscopy and spectrometry. Of the five, one was monomethylated (3), one was dimethylated (4), two were trimethylated (2 and 6), and one was tetramethylated (5). The relative potency of all compounds was determined in a 72 hr growth-inhibition assay against a panel of three prostate cancer cell lines (DU-145, PC-3, and LNCaP) and a human hepatoma cell line (Huh7.5.1) and compared to natural silybin B. Compounds also were evaluated for inhibition of both cytochrome P450 2C9 (CYP2C9) activity in human liver microsomes and hepatitis C virus infection in Huh7.5.1 cells. The monomethyl and dimethyl analogues were shown to have enhanced activity in terms of cytotoxicity, CYP2C9 inhibitory potency, and antiviral activity (up to 6-fold increased potency) compared to the parent compound, silybin B. In total, these data suggested that methylation of flavonolignans can increase bioactivity.
- Published
- 2013
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27. Mechanisms underlying food–drug interactions: Inhibition of intestinal metabolism and transport
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Mary F. Paine, Nicholas H. Oberlies, and Christina S. Won
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Drug ,media_common.quotation_subject ,In silico ,Pharmacology ,Article ,law.invention ,Beverages ,Food-Drug Interactions ,Pharmacokinetics ,In vivo ,law ,Animals ,Cytochrome P-450 CYP3A ,Humans ,Pharmacology (medical) ,Glucuronosyltransferase ,Intestinal Mucosa ,media_common ,Clinical pharmacology ,biology ,Chemistry ,Clinical study design ,Cytochrome P450 ,Biological Transport ,Arylsulfotransferase ,biology.protein ,Citrus paradisi - Abstract
Food-drug interaction studies are critical to evaluate appropriate dosing, timing, and formulation of new drug candidates. These interactions often reflect prandial-associated changes in the extent and/or rate of systemic drug exposure. Physiologic and physicochemical mechanisms underlying food effects on drug disposition are well-characterized. However, biochemical mechanisms involving drug metabolizing enzymes and transport proteins remain underexplored. Several plant-derived beverages have been shown to modulate enzymes and transporters in the intestine, leading to altered pharmacokinetic (PK) and potentially negative pharmacodynamic (PD) outcomes. Commonly consumed fruit juices, teas, and alcoholic drinks contain phytochemicals that inhibit intestinal cytochrome P450 and phase II conjugation enzymes, as well as uptake and efflux transport proteins. Whereas myriad phytochemicals have been shown to inhibit these processes in vitro, translation to the clinic has been deemed insignificant or undetermined. An overlooked prerequisite for elucidating food effects on drug PK is thorough knowledge of causative bioactive ingredients. Substantial variability in bioactive ingredient composition and activity of a given dietary substance poses a challenge in conducting robust food-drug interaction studies. This confounding factor can be addressed by identifying and characterizing specific components, which could be used as marker compounds to improve clinical trial design and quantitatively predict food effects. Interpretation and integration of data from in vitro, in vivo, and in silico studies require collaborative expertise from multiple disciplines, from botany to clinical pharmacology (i.e., plant to patient). Development of more systematic methods and guidelines is needed to address the general lack of information on examining drug-dietary substance interactions prospectively.
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- 2012
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28. Mapping of sample collection data: GIS tools for the natural product researcher
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Feras Q. Alali, Nicholas H. Oberlies, Khaled Tawaha, James Rineer, William D. Wheaton, and Joseph O. Falkinham
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Geographic information system ,Geospatial analysis ,business.industry ,Computer science ,Elevation ,Plant Science ,Geospatial visualization ,computer.software_genre ,Biochemistry ,Data science ,Article ,Field (geography) ,Natural (archaeology) ,TRIPS architecture ,Sample collection ,business ,Agronomy and Crop Science ,computer ,Biotechnology - Abstract
Scientists engaged in the research of natural products often either conduct field collections themselves or collaborate with partners who do, such as botanists, mycologists, or SCUBA divers. The information gleaned from such collecting trips (e.g. longitude/latitude coordinates, geography, elevation, and a multitude of other field observations) have provided valuable data to the scientific community (e.g., biodiversity), even if it is tangential to the direct aims of the natural products research, which are often focused on drug discovery and/or chemical ecology. Geographic Information Systems (GIS) have been used to display, manage, and analyze geographic data, including collection sites for natural products. However, to the uninitiated, these tools are often beyond the financial and/or computational means of the natural product scientist. With new, free, and easy-to-use geospatial visualization tools, such as Google Earth, mapping and geographic imaging of sampling data are now within the reach of natural products scientists. The goals of the present study were to develop simple tools that are tailored for the natural products setting, thereby presenting a means to map such information, particularly via open source software like Google Earth.
- Published
- 2009
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29. The most widely recognized mushroom: Chemistry of the genus Amanita
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Nicholas H. Oberlies and Chen Li
- Subjects
Amanita ,Mushroom ,biology ,Genus ,Botany ,Hallucinogens ,General Medicine ,General Pharmacology, Toxicology and Pharmaceutics ,biology.organism_classification ,General Biochemistry, Genetics and Molecular Biology - Abstract
Many review papers have been published on mushrooms of the genus Amanita, as these are well known to both scientific and lay audiences, probably due to the toxic and/or hallucinogenic properties of some species. This article aims to supplement the content of previous reviews by categorizing all of the natural products isolated from any species in the genus Amanita. These compounds are subdivided into six major structural types, and references are provided for all species that have been examined chemically.
- Published
- 2005
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30. Waol A, trans-dihydrowaol A, and cis-dihydrowaol A: polyketide-derived γ-lactones from a Volutella species
- Author
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Cedric J. Pearce, Mario Figueroa, Tamam El-Elimat, Huzefa A. Raja, Nicholas H. Oberlies, Audrey F. Adcock, David J. Kroll, Mansukh C. Wani, and Steven M. Swanson
- Subjects
biology ,Bicyclic molecule ,Ascomycota ,Stereochemistry ,Chemistry ,Hypocreales ,Organic Chemistry ,Absolute configuration ,Nanotechnology ,Fractionation ,Ring (chemistry) ,biology.organism_classification ,Biochemistry ,Polyketide ,Drug Discovery ,Cytotoxicity - Abstract
An organic extract of a filamentous fungus (MSX 58801), identified as a Volutella sp. (Hypocreales, Ascomycota), displayed moderate cytotoxic activity against NCI-H460 human large cell lung carcinoma. Bioactivity-directed fractionation led to the isolation of three γ-lactones having the furo[3,4-b]pyran-5-one bicyclic ring system [waol A (1), trans-dihydrowaol A (2), and cis-dihydrowaol A (3)]. The structures were elucidated using a set of spectroscopic and spectrometric techniques; the absolute configuration of 2 was established via a modified Mosher’s ester method. Compounds 1 and 2 were evaluated for cytotoxicity against a human cancer cell panel.
- Published
- 2013
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31. How do you know that material is what it says it is? DNA barcoding for the taxonomic identification of fungi
- Author
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Nicholas H. Oberlies
- Subjects
0301 basic medicine ,03 medical and health sciences ,030104 developmental biology ,Evolutionary biology ,Identification (biology) ,General Medicine ,Biology ,Toxicology ,DNA barcoding - Published
- 2017
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32. Thielavin B methyl ester: a cytotoxic benzoate trimer from an unidentified fungus (MSX 55526) from the Order Sordariales
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Nicholas H. Oberlies, Mansukh C. Wani, Cedric J. Pearce, Sloan Ayers, Brandie M. Ehrmann, David J. Kroll, and Audrey F. Adcock
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biology ,Ergosterol peroxide ,Stereochemistry ,Organic Chemistry ,Trimer ,Fungus ,Fractionation ,biology.organism_classification ,Biochemistry ,Article ,Order Sordariales ,chemistry.chemical_compound ,chemistry ,Drug Discovery ,Cytotoxic T cell ,Thielavin B ,Cytotoxicity - Abstract
As part of our ongoing investigation of filamentous fungi for anticancer leads, an active fungal extract was identified from the Mycosynthetix library (MSX 55526; from the Order Sordariales). Bioactivity-directed fractionation yielded the known ergosterol peroxide (2) and 5α,8α-epidioxyergosta-6,9(11),22-trien-3β-ol(3), and a new benzoate trimer, termed thielavin B methyl ester (1). The structure elucidation of 1 was facilitated by the use of HRMS coupled to an APPI (atmospheric pressure photoionization) source. Compound 1 proved to be moderately active against a panel of three cancer cell lines.
- Published
- 2011
- Full Text
- View/download PDF
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