1. Insights into VDAC Gating: Room-Temperature X-ray Crystal Structure of mVDAC-1
- Author
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Gonzalez-DeWhitt, Kristofer R, Ermolova, Natalia, Wang, Harrison K, Hekstra, Doeke R, Althoff, Thorsten, and Abramson, Jeff
- Subjects
Biochemistry and Cell Biology ,Biological Sciences ,1.1 Normal biological development and functioning ,Voltage-Dependent Anion Channel 1 ,Crystallography ,X-Ray ,Animals ,Mice ,Temperature ,Models ,Molecular ,Ion Channel Gating ,Protein Conformation ,voltage-dependent anion channel ,mitochondrial biology ,electric field-stimulated X-ray crystallography ,room-temperature crystallography ,Biochemistry and cell biology ,Bioinformatics and computational biology ,Medical biotechnology - Abstract
The voltage-dependent anion channel (VDAC) is a crucial mitochondrial protein that facilitates ion and metabolite exchange between mitochondria and the cytosol. Initially characterized over three decades ago, the structure of VDAC-1 was resolved in 2008, revealing a novel β-barrel protein architecture. This study presents the first room-temperature crystal structure of mouse VDAC-1 (mVDAC-1), which is a significant step toward understanding the channel's gating mechanism. The new structure, obtained at a 3.3 Å resolution, demonstrates notable differences from the previously determined cryogenic structure, particularly in the loop regions, which may be critical for the transition between the 'open' and 'closed' states of VDAC-1. Comparative analysis of the root-mean-square deviation (R.M.S.D.) and B-factors between the cryogenic and room-temperature structures suggests that these conformational differences, although subtle, are important for VDAC's functional transitions. The application of electric field-stimulated X-ray crystallography (EF-X) is proposed as a future direction to resolve the 'closed' state of VDAC-1 by inducing voltage-driven conformational changes in order to elucidate the dynamic gating mechanism of VDAC-1. Our findings have profound implications for understanding the molecular basis of VDAC's role in mitochondrial function and its regulation under physiological conditions.
- Published
- 2024