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1. Additional file 8 of The origins and genomic diversity of American Civil War Era smallpox vaccine strains

Author

Duggan, Ana T., Klunk, Jennifer, Porter, Ashleigh F., Dhody, Anna N., Hicks, Robert, Smith, Geoffrey L., Humphreys, Margaret, McCollum, Andrea M., Whitni B. Davidson, Wilkins, Kimberly, Li, Yu, Burke, Amanda, Polasky, Hanna, Flanders, Lowell, Poinar, Debi, Amogelang R. Raphenya, Lau, Tammy T. Y., Alcock, Brian, McArthur, Andrew G., G. Brian Golding, Holmes, Edward C., and Poinar, Hendrik N.

Subjects
3. Good health
Abstract

Additional file 8: Figure S4. Regression analyses of root-to-tip genetic distance on the ML phylogeny against either year of collection or year of sequencing.

Published
2020
Full Text
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2. Additional file 6 of The origins and genomic diversity of American Civil War Era smallpox vaccine strains

Author

Duggan, Ana T., Klunk, Jennifer, Porter, Ashleigh F., Dhody, Anna N., Hicks, Robert, Smith, Geoffrey L., Humphreys, Margaret, McCollum, Andrea M., Whitni B. Davidson, Wilkins, Kimberly, Li, Yu, Burke, Amanda, Polasky, Hanna, Flanders, Lowell, Poinar, Debi, Amogelang R. Raphenya, Lau, Tammy T. Y., Alcock, Brian, McArthur, Andrew G., G. Brian Golding, Holmes, Edward C., and Poinar, Hendrik N.

Subjects
3. Good health
Abstract

Additional file 6: Figure S2. Maximum likelihood trees for Mutter vaccine strains called in reference to alternative VACV genomes.

Published
2020
Full Text
View/download PDF

3. Additional file 6 of The origins and genomic diversity of American Civil War Era smallpox vaccine strains

Author

Duggan, Ana T., Klunk, Jennifer, Porter, Ashleigh F., Dhody, Anna N., Hicks, Robert, Smith, Geoffrey L., Humphreys, Margaret, McCollum, Andrea M., Whitni B. Davidson, Wilkins, Kimberly, Li, Yu, Burke, Amanda, Polasky, Hanna, Flanders, Lowell, Poinar, Debi, Amogelang R. Raphenya, Lau, Tammy T. Y., Alcock, Brian, McArthur, Andrew G., G. Brian Golding, Holmes, Edward C., and Poinar, Hendrik N.

Subjects
3. Good health
Abstract

Additional file 6: Figure S2. Maximum likelihood trees for Mutter vaccine strains called in reference to alternative VACV genomes.

4. Additional file 13 of The origins and genomic diversity of American Civil War Era smallpox vaccine strains

Author

Duggan, Ana T., Klunk, Jennifer, Porter, Ashleigh F., Dhody, Anna N., Hicks, Robert, Smith, Geoffrey L., Humphreys, Margaret, McCollum, Andrea M., Whitni B. Davidson, Wilkins, Kimberly, Li, Yu, Burke, Amanda, Polasky, Hanna, Flanders, Lowell, Poinar, Debi, Amogelang R. Raphenya, Lau, Tammy T. Y., Alcock, Brian, McArthur, Andrew G., G. Brian Golding, Holmes, Edward C., and Poinar, Hendrik N.

Subjects
3. Good health
Abstract

Additional file 13: Figure S7. Comparison of terminal damage patterns of VK01.

5. Additional file 8 of The origins and genomic diversity of American Civil War Era smallpox vaccine strains

Author

Duggan, Ana T., Klunk, Jennifer, Porter, Ashleigh F., Dhody, Anna N., Hicks, Robert, Smith, Geoffrey L., Humphreys, Margaret, McCollum, Andrea M., Whitni B. Davidson, Wilkins, Kimberly, Li, Yu, Burke, Amanda, Polasky, Hanna, Flanders, Lowell, Poinar, Debi, Amogelang R. Raphenya, Lau, Tammy T. Y., Alcock, Brian, McArthur, Andrew G., G. Brian Golding, Holmes, Edward C., and Poinar, Hendrik N.

Subjects
3. Good health
Abstract

Additional file 8: Figure S4. Regression analyses of root-to-tip genetic distance on the ML phylogeny against either year of collection or year of sequencing.

6. Additional file 7 of The origins and genomic diversity of American Civil War Era smallpox vaccine strains

Author

Duggan, Ana T., Klunk, Jennifer, Porter, Ashleigh F., Dhody, Anna N., Hicks, Robert, Smith, Geoffrey L., Humphreys, Margaret, McCollum, Andrea M., Whitni B. Davidson, Wilkins, Kimberly, Li, Yu, Burke, Amanda, Polasky, Hanna, Flanders, Lowell, Poinar, Debi, Amogelang R. Raphenya, Lau, Tammy T. Y., Alcock, Brian, McArthur, Andrew G., G. Brian Golding, Holmes, Edward C., and Poinar, Hendrik N.

Subjects
3. Good health
Abstract

Additional file 7: Figure S3. GrapeTree analysis of 79 OPXV.

7. Additional file 13 of The origins and genomic diversity of American Civil War Era smallpox vaccine strains

Author

Duggan, Ana T., Klunk, Jennifer, Porter, Ashleigh F., Dhody, Anna N., Hicks, Robert, Smith, Geoffrey L., Humphreys, Margaret, McCollum, Andrea M., Whitni B. Davidson, Wilkins, Kimberly, Li, Yu, Burke, Amanda, Polasky, Hanna, Flanders, Lowell, Poinar, Debi, Amogelang R. Raphenya, Lau, Tammy T. Y., Alcock, Brian, McArthur, Andrew G., G. Brian Golding, Holmes, Edward C., and Poinar, Hendrik N.

Subjects
3. Good health
Abstract

Additional file 13: Figure S7. Comparison of terminal damage patterns of VK01.

8. Additional file 3 of The origins and genomic diversity of American Civil War Era smallpox vaccine strains

Author

Duggan, Ana T., Klunk, Jennifer, Porter, Ashleigh F., Dhody, Anna N., Hicks, Robert, Smith, Geoffrey L., Humphreys, Margaret, McCollum, Andrea M., Whitni B. Davidson, Wilkins, Kimberly, Li, Yu, Burke, Amanda, Polasky, Hanna, Flanders, Lowell, Poinar, Debi, Amogelang R. Raphenya, Lau, Tammy T. Y., Alcock, Brian, McArthur, Andrew G., G. Brian Golding, Holmes, Edward C., and Poinar, Hendrik N.

Subjects
3. Good health
Abstract

Additional file 3: Figure S1. Terminal damage rates for VK01, VK02, VK05, VK08 and VK12 libraries mapped to VACV strain Copenhagen reference (M35027) and human mitochondrial reference (rCRS).

9. Additional file 11 of The origins and genomic diversity of American Civil War Era smallpox vaccine strains

Author

Duggan, Ana T., Klunk, Jennifer, Porter, Ashleigh F., Dhody, Anna N., Hicks, Robert, Smith, Geoffrey L., Humphreys, Margaret, McCollum, Andrea M., Whitni B. Davidson, Wilkins, Kimberly, Li, Yu, Burke, Amanda, Polasky, Hanna, Flanders, Lowell, Poinar, Debi, Amogelang R. Raphenya, Lau, Tammy T. Y., Alcock, Brian, McArthur, Andrew G., G. Brian Golding, Holmes, Edward C., and Poinar, Hendrik N.

Subjects
3. Good health
Abstract

Additional file 11: Figure S6. Mütter catalogue # 17090.29 before and after non-destructive sampling.

10. Additional file 15 of The origins and genomic diversity of American Civil War Era smallpox vaccine strains

Author

Duggan, Ana T., Klunk, Jennifer, Porter, Ashleigh F., Dhody, Anna N., Hicks, Robert, Smith, Geoffrey L., Humphreys, Margaret, McCollum, Andrea M., Whitni B. Davidson, Wilkins, Kimberly, Li, Yu, Burke, Amanda, Polasky, Hanna, Flanders, Lowell, Poinar, Debi, Amogelang R. Raphenya, Lau, Tammy T. Y., Alcock, Brian, McArthur, Andrew G., G. Brian Golding, Holmes, Edward C., and Poinar, Hendrik N.

Subjects
3. Good health
Abstract

Additional file 15: Figures S8–10. VK01 coverage relative to Copenhagen VACV strain M35027, GRI90 CPXV strain X93455, and Horsepox strain DQ792504.

11. Additional file 1 of The origins and genomic diversity of American Civil War Era smallpox vaccine strains

Author

Duggan, Ana T., Klunk, Jennifer, Porter, Ashleigh F., Dhody, Anna N., Hicks, Robert, Smith, Geoffrey L., Humphreys, Margaret, McCollum, Andrea M., Whitni B. Davidson, Wilkins, Kimberly, Li, Yu, Burke, Amanda, Polasky, Hanna, Flanders, Lowell, Poinar, Debi, Amogelang R. Raphenya, Lau, Tammy T. Y., Alcock, Brian, McArthur, Andrew G., G. Brian Golding, Holmes, Edward C., and Poinar, Hendrik N.

Subjects
3. Good health
Abstract

Additional file 1. Supplementary Material and Methods.

12. Additional file 16 of The origins and genomic diversity of American Civil War Era smallpox vaccine strains

Author

Duggan, Ana T., Klunk, Jennifer, Porter, Ashleigh F., Dhody, Anna N., Hicks, Robert, Smith, Geoffrey L., Humphreys, Margaret, McCollum, Andrea M., Whitni B. Davidson, Wilkins, Kimberly, Li, Yu, Burke, Amanda, Polasky, Hanna, Flanders, Lowell, Poinar, Debi, Amogelang R. Raphenya, Lau, Tammy T. Y., Alcock, Brian, McArthur, Andrew G., G. Brian Golding, Holmes, Edward C., and Poinar, Hendrik N.

Subjects
food and beverages, 3. Good health
Abstract

Additional file 16: Figure S11. Maximum likelihood phylogenetic analysis of historical vaccine strains in relation to other OPXV using largest de novo assembled contig for each sample.

13. Additional file 11 of The origins and genomic diversity of American Civil War Era smallpox vaccine strains

Author

Duggan, Ana T., Klunk, Jennifer, Porter, Ashleigh F., Dhody, Anna N., Hicks, Robert, Smith, Geoffrey L., Humphreys, Margaret, McCollum, Andrea M., Whitni B. Davidson, Wilkins, Kimberly, Li, Yu, Burke, Amanda, Polasky, Hanna, Flanders, Lowell, Poinar, Debi, Amogelang R. Raphenya, Lau, Tammy T. Y., Alcock, Brian, McArthur, Andrew G., G. Brian Golding, Holmes, Edward C., and Poinar, Hendrik N.

Subjects
3. Good health
Abstract

Additional file 11: Figure S6. Mütter catalogue # 17090.29 before and after non-destructive sampling.

14. Additional file 7 of The origins and genomic diversity of American Civil War Era smallpox vaccine strains

Author

Duggan, Ana T., Klunk, Jennifer, Porter, Ashleigh F., Dhody, Anna N., Hicks, Robert, Smith, Geoffrey L., Humphreys, Margaret, McCollum, Andrea M., Whitni B. Davidson, Wilkins, Kimberly, Li, Yu, Burke, Amanda, Polasky, Hanna, Flanders, Lowell, Poinar, Debi, Amogelang R. Raphenya, Lau, Tammy T. Y., Alcock, Brian, McArthur, Andrew G., G. Brian Golding, Holmes, Edward C., and Poinar, Hendrik N.

Subjects
3. Good health
Abstract

Additional file 7: Figure S3. GrapeTree analysis of 79 OPXV.

15. Additional file 17 of The origins and genomic diversity of American Civil War Era smallpox vaccine strains

Author

Duggan, Ana T., Klunk, Jennifer, Porter, Ashleigh F., Dhody, Anna N., Hicks, Robert, Smith, Geoffrey L., Humphreys, Margaret, McCollum, Andrea M., Whitni B. Davidson, Wilkins, Kimberly, Li, Yu, Burke, Amanda, Polasky, Hanna, Flanders, Lowell, Poinar, Debi, Amogelang R. Raphenya, Lau, Tammy T. Y., Alcock, Brian, McArthur, Andrew G., G. Brian Golding, Holmes, Edward C., and Poinar, Hendrik N.

Subjects
3. Good health
Abstract

Additional file 17. Review history.

16. Additional file 10 of The origins and genomic diversity of American Civil War Era smallpox vaccine strains

Author

Duggan, Ana T., Klunk, Jennifer, Porter, Ashleigh F., Dhody, Anna N., Hicks, Robert, Smith, Geoffrey L., Humphreys, Margaret, McCollum, Andrea M., Whitni B. Davidson, Wilkins, Kimberly, Li, Yu, Burke, Amanda, Polasky, Hanna, Flanders, Lowell, Poinar, Debi, Amogelang R. Raphenya, Lau, Tammy T. Y., Alcock, Brian, McArthur, Andrew G., G. Brian Golding, Holmes, Edward C., and Poinar, Hendrik N.

Subjects
3. Good health
Abstract

Additional file 10: Figure S5. Partitioned maximum likelihood analysis of OPXV.

17. Additional file 17 of The origins and genomic diversity of American Civil War Era smallpox vaccine strains

Author

Duggan, Ana T., Klunk, Jennifer, Porter, Ashleigh F., Dhody, Anna N., Hicks, Robert, Smith, Geoffrey L., Humphreys, Margaret, McCollum, Andrea M., Whitni B. Davidson, Wilkins, Kimberly, Li, Yu, Burke, Amanda, Polasky, Hanna, Flanders, Lowell, Poinar, Debi, Amogelang R. Raphenya, Lau, Tammy T. Y., Alcock, Brian, McArthur, Andrew G., G. Brian Golding, Holmes, Edward C., and Poinar, Hendrik N.

Subjects
3. Good health
Abstract

Additional file 17. Review history.

18. Additional file 15 of The origins and genomic diversity of American Civil War Era smallpox vaccine strains

Author

Duggan, Ana T., Klunk, Jennifer, Porter, Ashleigh F., Dhody, Anna N., Hicks, Robert, Smith, Geoffrey L., Humphreys, Margaret, McCollum, Andrea M., Whitni B. Davidson, Wilkins, Kimberly, Li, Yu, Burke, Amanda, Polasky, Hanna, Flanders, Lowell, Poinar, Debi, Amogelang R. Raphenya, Lau, Tammy T. Y., Alcock, Brian, McArthur, Andrew G., G. Brian Golding, Holmes, Edward C., and Poinar, Hendrik N.

Subjects
3. Good health
Abstract

Additional file 15: Figures S8–10. VK01 coverage relative to Copenhagen VACV strain M35027, GRI90 CPXV strain X93455, and Horsepox strain DQ792504.

19. Additional file 3 of The origins and genomic diversity of American Civil War Era smallpox vaccine strains

Author

Duggan, Ana T., Klunk, Jennifer, Porter, Ashleigh F., Dhody, Anna N., Hicks, Robert, Smith, Geoffrey L., Humphreys, Margaret, McCollum, Andrea M., Whitni B. Davidson, Wilkins, Kimberly, Li, Yu, Burke, Amanda, Polasky, Hanna, Flanders, Lowell, Poinar, Debi, Amogelang R. Raphenya, Lau, Tammy T. Y., Alcock, Brian, McArthur, Andrew G., G. Brian Golding, Holmes, Edward C., and Poinar, Hendrik N.

Subjects
3. Good health
Abstract

Additional file 3: Figure S1. Terminal damage rates for VK01, VK02, VK05, VK08 and VK12 libraries mapped to VACV strain Copenhagen reference (M35027) and human mitochondrial reference (rCRS).

20. Additional file 10 of The origins and genomic diversity of American Civil War Era smallpox vaccine strains

Author

Duggan, Ana T., Klunk, Jennifer, Porter, Ashleigh F., Dhody, Anna N., Hicks, Robert, Smith, Geoffrey L., Humphreys, Margaret, McCollum, Andrea M., Whitni B. Davidson, Wilkins, Kimberly, Li, Yu, Burke, Amanda, Polasky, Hanna, Flanders, Lowell, Poinar, Debi, Amogelang R. Raphenya, Lau, Tammy T. Y., Alcock, Brian, McArthur, Andrew G., G. Brian Golding, Holmes, Edward C., and Poinar, Hendrik N.

Subjects
3. Good health
Abstract

Additional file 10: Figure S5. Partitioned maximum likelihood analysis of OPXV.

21. Additional file 1 of The origins and genomic diversity of American Civil War Era smallpox vaccine strains

Author

Duggan, Ana T., Klunk, Jennifer, Porter, Ashleigh F., Dhody, Anna N., Hicks, Robert, Smith, Geoffrey L., Humphreys, Margaret, McCollum, Andrea M., Whitni B. Davidson, Wilkins, Kimberly, Li, Yu, Burke, Amanda, Polasky, Hanna, Flanders, Lowell, Poinar, Debi, Amogelang R. Raphenya, Lau, Tammy T. Y., Alcock, Brian, McArthur, Andrew G., G. Brian Golding, Holmes, Edward C., and Poinar, Hendrik N.

Subjects
3. Good health
Abstract

Additional file 1. Supplementary Material and Methods.

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