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1. Additional file 1 of Impact of early antibiotic exposure on the risk of colonization with potential pathogens in very preterm infants: a retrospective cohort analysis

Author

Bubser, Caren, Liese, Jan, Serna-Higuita, Lina Maria, Müller, Andreas, Vochem, Matthias, Arand, Jörg, Karck, Ulrich, Gross, Maximilian, Poets, Christian F., Härtel, Christoph, Zemlin, Michael, Gille, Christian, and Köstlin-Gille, Natascha

Subjects
Data_FILES
Abstract

Additional file 1. Figures.

Published
2022
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2. Additional file 2 of Infection control of COVID-19 in pediatric tertiary care hospitals: challenges and implications for future pandemics

Author

Remppis, Jonathan, Hilberath, Johannes, Ganzenmüller, Tina, Slavetinsky, Christoph, Vasconcelos, Malte Kohns, Gnädig, Marion, Liese, Jan, Göpel, Siri, Lang, Peter, Heinzel, Oliver, and Renk, Hanna

Abstract

Additional file 2. Questionnaire of the online survey among health-care staff and extract of the questionnaire for caregivers (English translation).

Published
2022
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3. Additional file 1 of Infection control of COVID-19 in pediatric tertiary care hospitals: challenges and implications for future pandemics

Author

Remppis, Jonathan, Hilberath, Johannes, Ganzenmüller, Tina, Slavetinsky, Christoph, Vasconcelos, Malte Kohns, Gnädig, Marion, Liese, Jan, Göpel, Siri, Lang, Peter, Heinzel, Oliver, and Renk, Hanna

Subjects
body regions, viruses, fungi, skin and connective tissue diseases, respiratory tract diseases
Abstract

Additional file 1. SARS-CoV-2 diagnostic test procedures.

Published
2022
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4. Additional file 2 of Impact of early antibiotic exposure on the risk of colonization with potential pathogens in very preterm infants: a retrospective cohort analysis

Author

Bubser, Caren, Liese, Jan, Serna-Higuita, Lina Maria, Müller, Andreas, Vochem, Matthias, Arand, Jörg, Karck, Ulrich, Gross, Maximilian, Poets, Christian F., Härtel, Christoph, Zemlin, Michael, Gille, Christian, and Köstlin-Gille, Natascha

Subjects
Data_FILES
Abstract

Additional file 2. Additional tables.

Published
2022
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5. Additional file 3 of Infection control of COVID-19 in pediatric tertiary care hospitals: challenges and implications for future pandemics

Author

Remppis, Jonathan, Hilberath, Johannes, Ganzenmüller, Tina, Slavetinsky, Christoph, Vasconcelos, Malte Kohns, Gnädig, Marion, Liese, Jan, Göpel, Siri, Lang, Peter, Heinzel, Oliver, and Renk, Hanna

Subjects
genetic structures, psychological phenomena and processes
Abstract

Additional file 3. Results of survey on the perception of infection control measures by hospital staff, stratified by profession.

Published
2022
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6. Additional file 6: Figure S2. of Genomic characterisation of clinical and environmental Pseudomonas putida group strains and determination of their role in the transfer of antimicrobial resistance genes to Pseudomonas aeruginosa

Author

Peter, Silke, Oberhettinger, Philipp, Schuele, Leonard, Dinkelacker, Ariane, Vogel, Wichard, DĂśrfel, Daniela, Bezdan, Daniela, Ossowski, Stephan, Marschal, Matthias, Liese, Jan, and Willmann, Matthias

Abstract

16S rRNA based maximum-likelihood tree of the P. putida group isolates and reference strains. The numbers displayed at the nodes are bootstrap values. The scale bar represents the expected number of changes per site. (PDF 456Â kb)

Published
2017
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7. Additional file 2: Table S1. of Genomic characterisation of clinical and environmental Pseudomonas putida group strains and determination of their role in the transfer of antimicrobial resistance genes to Pseudomonas aeruginosa

Author

Peter, Silke, Oberhettinger, Philipp, Schuele, Leonard, Dinkelacker, Ariane, Vogel, Wichard, DĂśrfel, Daniela, Bezdan, Daniela, Ossowski, Stephan, Marschal, Matthias, Liese, Jan, and Willmann, Matthias

Abstract

Overview of P. putida assembly statistics and genome coverage based on the assembly obtained for the a5 assembler. (DOCX 17Â kb)

Published
2017
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8. Additional file 9: Table S6. of Genomic characterisation of clinical and environmental Pseudomonas putida group strains and determination of their role in the transfer of antimicrobial resistance genes to Pseudomonas aeruginosa

Author

Peter, Silke, Oberhettinger, Philipp, Schuele, Leonard, Dinkelacker, Ariane, Vogel, Wichard, DĂśrfel, Daniela, Bezdan, Daniela, Ossowski, Stephan, Marschal, Matthias, Liese, Jan, and Willmann, Matthias

Subjects
polycyclic compounds, bacteria, biochemical phenomena, metabolism, and nutrition, bacterial infections and mycoses, complex mixtures
Abstract

Overview of predicted plasmid harbouring a bla VIM gene and the characteristics of the genetic bla VIM environment. (DOCX 31Â kb)

Published
2017
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9. Additional file 8: Figure S3. of Genomic characterisation of clinical and environmental Pseudomonas putida group strains and determination of their role in the transfer of antimicrobial resistance genes to Pseudomonas aeruginosa

Author

Peter, Silke, Oberhettinger, Philipp, Schuele, Leonard, Dinkelacker, Ariane, Vogel, Wichard, Dörfel, Daniela, Bezdan, Daniela, Ossowski, Stephan, Marschal, Matthias, Liese, Jan, and Willmann, Matthias

Abstract

Core genome maximum-likelihood phylogeny of 17 blaVIM-2 positive P. aeruginosa strains isolated from patients (n = 7, “P” as first letter) and water-related environmental sources (n = 10, “E” as first letter). All isolates are genetically highly similar. An outgroup strain (blaIMP-8 positive P. aeruginosa [29]) was introduced to ensure a proper visualisation of the strains’ sequence similarity and relatedness. The scale bar represents the expected number of changes per site. *P21 was also colonized with two different P. putida strains P21A and P21B. (PDF 295 kb)

Published
2017
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10. Additional file 1: Figure S1. of Genomic characterisation of clinical and environmental Pseudomonas putida group strains and determination of their role in the transfer of antimicrobial resistance genes to Pseudomonas aeruginosa

Author

Peter, Silke, Oberhettinger, Philipp, Schuele, Leonard, Dinkelacker, Ariane, Vogel, Wichard, DĂśrfel, Daniela, Bezdan, Daniela, Ossowski, Stephan, Marschal, Matthias, Liese, Jan, and Willmann, Matthias

Abstract

Workflow of the study design and strain inclusion criteria. (PDF 151Â kb)

Published
2017
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11. Additional file 3: Table S2. of Genomic characterisation of clinical and environmental Pseudomonas putida group strains and determination of their role in the transfer of antimicrobial resistance genes to Pseudomonas aeruginosa

Author

Peter, Silke, Oberhettinger, Philipp, Schuele, Leonard, Dinkelacker, Ariane, Vogel, Wichard, DĂśrfel, Daniela, Bezdan, Daniela, Ossowski, Stephan, Marschal, Matthias, Liese, Jan, and Willmann, Matthias

Abstract

Overview of P. aeruginosa assembly statistics and genome coverage based on the assembly obtained for the a5 assembler. (DOCX 14Â kb)

Published
2017
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12. Additional file 7: Table S5. of Genomic characterisation of clinical and environmental Pseudomonas putida group strains and determination of their role in the transfer of antimicrobial resistance genes to Pseudomonas aeruginosa

Author

Peter, Silke, Oberhettinger, Philipp, Schuele, Leonard, Dinkelacker, Ariane, Vogel, Wichard, DĂśrfel, Daniela, Bezdan, Daniela, Ossowski, Stephan, Marschal, Matthias, Liese, Jan, and Willmann, Matthias

Abstract

Summary of epidemiological data of the P. putida isolates from the different NGS clusters. (DOCX 18Â kb)

Published
2017
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13. Additional file 5: Table S4. of Genomic characterisation of clinical and environmental Pseudomonas putida group strains and determination of their role in the transfer of antimicrobial resistance genes to Pseudomonas aeruginosa

Author

Peter, Silke, Oberhettinger, Philipp, Schuele, Leonard, Dinkelacker, Ariane, Vogel, Wichard, DĂśrfel, Daniela, Bezdan, Daniela, Ossowski, Stephan, Marschal, Matthias, Liese, Jan, and Willmann, Matthias

Subjects
body regions
Abstract

Overview of the closest related type strains based on the average nucleotide identity (ANI). (DOCX 16Â kb)

Published
2017
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