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15 results on '"Nome, Torfinn"'

2. Additional file 1: of SalMotifDB: a tool for analyzing putative transcription factor binding sites in salmonid genomes

Author

Teshome Mulugeta, Nome, Torfinn, Thu-Hien To, Gundappa, Manu, Macqueen, Daniel, VĂĽge, Dag, Sandve, Simen, and Hvidsten, Torgeir

Abstract

Figure S1. A radial tree displaying the similarity structure of a selected motif cluster. The inner node represent the cluster name (cluster-393), nodes in the second layer represent the motif databases, the third layer represent motif/TF names and the outer layer represent consensus motifs (not available for TRANSFAC). The central motifs of each motif database cluster are highlighted in red. (PDF 260 kb)

Published
2019
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4. Additional file 2: Table S1. of CRABP1, C1QL1 and LCN2 are biomarkers of differentiated thyroid carcinoma, and predict extrathyroidal extension

Author

Celestino, Ricardo, Nome, Torfinn, Pestana, Ana, Hoff, Andreas M., A. Pedro Gonçalves, Pereira, Luísa, Cavadas, Bruno, Eloy, Catarina, Bjøro, Trine, Sobrinho-Simões, Manuel, Skotheim, Rolf I., and Soares, Paula

Subjects
endocrine system
Abstract

Genes differentially expressed between minimally (mFTC) and widely invasive follicular thyroid carcinoma (wFTC). (DOCX 14 kb)

Published
2018
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5. Additional file 12: Table S6. of CRABP1, C1QL1 and LCN2 are biomarkers of differentiated thyroid carcinoma, and predict extrathyroidal extension

Author

Celestino, Ricardo, Nome, Torfinn, Pestana, Ana, Hoff, Andreas M., A. Pedro Gonçalves, Pereira, Luísa, Cavadas, Bruno, Eloy, Catarina, Bjøro, Trine, Sobrinho-Simões, Manuel, Skotheim, Rolf I., and Soares, Paula

Abstract

Clinicopathological and genetic data of the FTC classified by classes based on gene expression. (DOCX 18 kb)

Published
2018
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6. Additional file 13: Table S7. of CRABP1, C1QL1 and LCN2 are biomarkers of differentiated thyroid carcinoma, and predict extrathyroidal extension

Author

Celestino, Ricardo, Nome, Torfinn, Pestana, Ana, Hoff, Andreas M., A. Pedro Gonçalves, Pereira, Luísa, Cavadas, Bruno, Eloy, Catarina, Bjøro, Trine, Sobrinho-Simões, Manuel, Skotheim, Rolf I., and Soares, Paula

Abstract

Clinicopathological and genetic data of the FVPTC classified by classes based on gene expression. (DOCX 17 kb)

Published
2018
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7. Additional file 8: of CRABP1, C1QL1 and LCN2 are biomarkers of differentiated thyroid carcinoma, and predict extrathyroidal extension

Author

Celestino, Ricardo, Nome, Torfinn, Pestana, Ana, Hoff, Andreas M., A. Pedro Gonçalves, Pereira, Luísa, Cavadas, Bruno, Eloy, Catarina, Bjøro, Trine, Sobrinho-Simões, Manuel, Skotheim, Rolf I., and Soares, Paula

Subjects
endocrine system
Abstract

Prediction and experimental validation of the fusion genes expressed in follicular thyroid carcinomas used in RNA-sequencing. (DOCX 17 kb)

Published
2018
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8. Additional file 7: Table S4. of CRABP1, C1QL1 and LCN2 are biomarkers of differentiated thyroid carcinoma, and predict extrathyroidal extension

Author

Celestino, Ricardo, Nome, Torfinn, Pestana, Ana, Hoff, Andreas M., A. Pedro Gonçalves, Pereira, Luísa, Cavadas, Bruno, Eloy, Catarina, Bjøro, Trine, Sobrinho-Simões, Manuel, Skotheim, Rolf I., and Soares, Paula

Abstract

Oligonucleotide primers used in RT-PCR to detect the fusion genes. (DOCX 13 kb)

Published
2018
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9. Additional file 6: Table S3. of CRABP1, C1QL1 and LCN2 are biomarkers of differentiated thyroid carcinoma, and predict extrathyroidal extension

Author

Celestino, Ricardo, Nome, Torfinn, Pestana, Ana, Hoff, Andreas M., A. Pedro Gonçalves, Pereira, Luísa, Cavadas, Bruno, Eloy, Catarina, Bjøro, Trine, Sobrinho-Simões, Manuel, Skotheim, Rolf I., and Soares, Paula

Subjects
endocrine system
Abstract

Fusion genes selected by customized filtering steps and experimentally validated by RT-PCR and Sanger sequencing. FTC, follicular thyroid carcinoma; ORF, open reading frame. (DOCX 15 kb)

Published
2018
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10. Additional file 14: Table S8. of CRABP1, C1QL1 and LCN2 are biomarkers of differentiated thyroid carcinoma, and predict extrathyroidal extension

Author

Celestino, Ricardo, Nome, Torfinn, Pestana, Ana, Hoff, Andreas M., A. Pedro Gonçalves, Pereira, Luísa, Cavadas, Bruno, Eloy, Catarina, Bjøro, Trine, Sobrinho-Simões, Manuel, Skotheim, Rolf I., and Soares, Paula

Subjects
endocrine system diseases
Abstract

Clinicopathological and genetic data of the PTC classified by classes based on gene expression. (DOCX 17 kb)

Published
2018
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11. Additional file 3: Table S2. of CRABP1, C1QL1 and LCN2 are biomarkers of differentiated thyroid carcinoma, and predict extrathyroidal extension

Author

Celestino, Ricardo, Nome, Torfinn, Pestana, Ana, Hoff, Andreas M., A. Pedro Gonçalves, Pereira, Luísa, Cavadas, Bruno, Eloy, Catarina, Bjøro, Trine, Sobrinho-Simões, Manuel, Skotheim, Rolf I., and Soares, Paula

Subjects
endocrine system
Abstract

Transcripts differentially expressed between minimally (mFTC) and widely invasive follicular thyroid carcinoma (wFTC). (DOCX 14 kb)

Published
2018
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12. Additional file 1: of CRABP1, C1QL1 and LCN2 are biomarkers of differentiated thyroid carcinoma, and predict extrathyroidal extension

Author

Celestino, Ricardo, Nome, Torfinn, Pestana, Ana, Hoff, Andreas M., A. Pedro Gonçalves, Pereira, Luísa, Cavadas, Bruno, Eloy, Catarina, Bjøro, Trine, Sobrinho-Simões, Manuel, Skotheim, Rolf I., and Soares, Paula

Abstract

Clinicopathological features and genetic alterations of the differentiated thyroid carcinoma (DTC) series. (DOCX 12 kb)

Published
2018
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13. Additional file 10: Table S5. of CRABP1, C1QL1 and LCN2 are biomarkers of differentiated thyroid carcinoma, and predict extrathyroidal extension

Author

Celestino, Ricardo, Nome, Torfinn, Pestana, Ana, Hoff, Andreas M., A. Pedro Gonçalves, Pereira, Luísa, Cavadas, Bruno, Eloy, Catarina, Bjøro, Trine, Sobrinho-Simões, Manuel, Skotheim, Rolf I., and Soares, Paula

Abstract

Receiver Operating Characteristics (ROC) curve analysis. ROC curves for individual biomarkers were generated using log2 (2-ΔΔCT) gene expression values and thyroid tissue type [differentiated thyroid carcinoma (DTC) and normal or DTC and follicular thyroid adenoma (FTA)] as input. For evaluation of the combined biomarker panel the sum of log2 (2-ΔΔCT) expression values from genes with gain (C1QL1 and LCN2) and loss (CRABP1 and CILP) in DTC were used. AUC, area under the curve; CI, confidence interval. (DOCX 14 kb)

Published
2018
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14. MOESM2 of Fine mapping of a QTL on bovine chromosome 6 using imputed full sequence data suggests a key role for the group-specific component (GC) gene in clinical mastitis and milk production

Author

Olsen, Hanne, Knutsen, Tim, Lewandowska-Sabat, Anna, Grove, Harald, Nome, Torfinn, Svendsen, Morten, Arnyasi, Mariann, Sodeland, Marte, Kristil Sundsaasen, Dahl, Sandra, BjøRg Heringstad, Hansen, Hanne, Olsaker, Ingrid, Kent, Matthew, and SigbjøRn Lien

Abstract

Additional file 2: Table S2. Primer sequences used for the reverse transcription qPCR (RT-qPCR).

Published
2016
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15. MOESM3 of Fine mapping of a QTL on bovine chromosome 6 using imputed full sequence data suggests a key role for the group-specific component (GC) gene in clinical mastitis and milk production

Author

Olsen, Hanne, Knutsen, Tim, Lewandowska-Sabat, Anna, Grove, Harald, Nome, Torfinn, Svendsen, Morten, Arnyasi, Mariann, Sodeland, Marte, Kristil Sundsaasen, Dahl, Sandra, BjøRg Heringstad, Hansen, Hanne, Olsaker, Ingrid, Kent, Matthew, and SigbjøRn Lien

Abstract

Additional file 3: Figure S1. Further description of the procedure for estimating DBP protein levels. Detailed description of the protocol for estimating the DBP levels in serum from 50 NR cows. Figure S1 gives a schematic explanation of vitamin D3 metabolism.

Published
2016
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