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Additional file 10: Figure S2.The RPTM normalized values for all miRNA belonging to the same miRNA family in each sample were summed. High abundance (>â 100,000 average RPTM per sample), moderate abundance (>â 1000 to

Additional file 9: Figure S1. A) Two-dimensional scatterplot of the biological coefficient of variation (BCV) among 18 biological replicates based on non-normalized counts of the 100 highest count miRNAs. The outlying samples that are indicated with * were removed. B) Two-dimensional scatterplot of the biological coefficient of variation (BCV) among 12 biological replicates (following removal of outliers) based on non-normalized counts of the 100 highest count miRNAs. In both A) and B) biological replicates grown in well-watered conditions are indicated with green, in mild water deficit stress with red, and in severe water deficit stress with black. Additional file 3: Figure S2: Plots of correlation between RNA-seq and stem-loop RT-qPCR results for the (A) -0.3â MPa vs WW, and (B) -1.6â MPa vs WW comparisons. The line of best fit is shown and the Spearmanâ s correlation coefficient (r) and p-values (p) are indicated on each plot

Additional file 11: Figure S3. Plots of correlation between RNA-seq and stem-loop RT-qPCR results for the (A) -0.3â MPa vs WW, and (B) -1.6â MPa vs WW comparisons. The line of best fit is shown and the Spearmanâ s correlation coefficient (r) and p-values (p) are indicated on each plot

This is a pdf file. This file includes 6 supplementary figures. (DOCX 1106 kb)

This is a pdf file. This file includes 6 supplementary figures. (PDF 2335 kb)

Figure S4. Mapping of differentially expressed enzymes in leaves due to salinity stress on the KEGG. (PDF 5590 kb)

Figure S5. Mapping of differentially expressed enzymes in roots due to salinity stress on the KEGG. (PDF 6204 kb)