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1. Additional file 26: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors

Author

Williams, Angela, Sharma, Mamta, Thatcher, Louise, Sarwar Azam, Hane, James, Sperschneider, Jana, Kidd, Brendan, Anderson, Jonathan, Ghosh, Raju, Gagan Garg, Lichtenzveig, Judith, H. Kistler, Shea, Terrance, Young, Sarah, Sally-Anne Buck, Kamphuis, Lars, Rachit Saxena, Pande, Suresh, Ma, Li-Jun, Varshney, Rajeev, and Singh, Karam

Abstract

Primer sequences used for qRT-PCR. (DOCX 12 kb)

Published
2016
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2. Additional file 11: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors

Author

Williams, Angela, Sharma, Mamta, Thatcher, Louise, Sarwar Azam, Hane, James, Sperschneider, Jana, Kidd, Brendan, Anderson, Jonathan, Ghosh, Raju, Gagan Garg, Lichtenzveig, Judith, H. Kistler, Shea, Terrance, Young, Sarah, Sally-Anne Buck, Kamphuis, Lars, Rachit Saxena, Pande, Suresh, Ma, Li-Jun, Varshney, Rajeev, and Singh, Karam

Abstract

Phylogenetic tree illustrating the relationship between the Fusarium sp. isolates used in this study Branch support values are shown in red. This tree illustrates that the legume-infecting isolates do not appear to be more closely related to each other than to other ff. spp. (PDF 21 kb)

Published
2016
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3. Additional file 1: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors

Author

Williams, Angela, Sharma, Mamta, Thatcher, Louise, Sarwar Azam, Hane, James, Sperschneider, Jana, Kidd, Brendan, Anderson, Jonathan, Ghosh, Raju, Gagan Garg, Lichtenzveig, Judith, H. Kistler, Shea, Terrance, Young, Sarah, Sally-Anne Buck, Kamphuis, Lars, Rachit Saxena, Pande, Suresh, Ma, Li-Jun, Varshney, Rajeev, and Singh, Karam

Subjects
fungi, food and beverages
Abstract

Summary of conditionally-dispensable chromosomes in Ascomycete plant pathogens. (DOCX 36 kb)

Published
2016
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4. Additional file 18: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors

Author

Williams, Angela, Sharma, Mamta, Thatcher, Louise, Sarwar Azam, Hane, James, Sperschneider, Jana, Kidd, Brendan, Anderson, Jonathan, Ghosh, Raju, Gagan Garg, Lichtenzveig, Judith, H. Kistler, Shea, Terrance, Young, Sarah, Sally-Anne Buck, Kamphuis, Lars, Rachit Saxena, Pande, Suresh, Ma, Li-Jun, Varshney, Rajeev, and Singh, Karam

Subjects
viruses, animal diseases, parasitic diseases, virus diseases
Abstract

Proteins with similarities to known fungal pathogenicity genes and their expression at 2 dpi in Fom -5190a. (DOCX 16 kb)

Published
2016
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5. Additional file 12: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors

Author

Williams, Angela, Sharma, Mamta, Thatcher, Louise, Sarwar Azam, Hane, James, Sperschneider, Jana, Kidd, Brendan, Anderson, Jonathan, Ghosh, Raju, Gagan Garg, Lichtenzveig, Judith, H. Kistler, Shea, Terrance, Young, Sarah, Sally-Anne Buck, Kamphuis, Lars, Rachit Saxena, Pande, Suresh, Ma, Li-Jun, Varshney, Rajeev, and Singh, Karam

Abstract

Ortholog found only in legume-infecting Fusarium sp. (DOCX 11 kb)

Published
2016
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6. Additional file 22: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors

Author

Williams, Angela, Sharma, Mamta, Thatcher, Louise, Sarwar Azam, Hane, James, Sperschneider, Jana, Kidd, Brendan, Anderson, Jonathan, Ghosh, Raju, Gagan Garg, Lichtenzveig, Judith, H. Kistler, Shea, Terrance, Young, Sarah, Sally-Anne Buck, Kamphuis, Lars, Rachit Saxena, Pande, Suresh, Ma, Li-Jun, Varshney, Rajeev, and Singh, Karam

Subjects
animal structures
Abstract

Best BLASTP matches of Fom -5190a candidate effector proteins and SIX protein orthologs versus NCBI non-redundant protein database (Feb 2015). (DOCX 15 kb)

Published
2016
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7. Additional file 14: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors

Author

Williams, Angela, Sharma, Mamta, Thatcher, Louise, Sarwar Azam, Hane, James, Sperschneider, Jana, Kidd, Brendan, Anderson, Jonathan, Ghosh, Raju, Gagan Garg, Lichtenzveig, Judith, H. Kistler, Shea, Terrance, Young, Sarah, Sally-Anne Buck, Kamphuis, Lars, Rachit Saxena, Pande, Suresh, Ma, Li-Jun, Varshney, Rajeev, and Singh, Karam

Subjects
food and beverages
Abstract

Comparison of differences in length between core and lineage specific scaffolds across Fusarium species. (DOCX 12 kb)

Published
2016
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8. Additional file 16: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors

Author

Williams, Angela, Sharma, Mamta, Thatcher, Louise, Sarwar Azam, Hane, James, Sperschneider, Jana, Kidd, Brendan, Anderson, Jonathan, Ghosh, Raju, Gagan Garg, Lichtenzveig, Judith, H. Kistler, Shea, Terrance, Young, Sarah, Sally-Anne Buck, Kamphuis, Lars, Rachit Saxena, Pande, Suresh, Ma, Li-Jun, Varshney, Rajeev, and Singh, Karam

Abstract

Pfam domains more abundant on predicted dispensable scaffolds in Foc -38-1. (DOCX 14 kb)

Published
2016
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9. Additional file 23: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors

Author

Williams, Angela, Sharma, Mamta, Thatcher, Louise, Sarwar Azam, Hane, James, Sperschneider, Jana, Kidd, Brendan, Anderson, Jonathan, Ghosh, Raju, Gagan Garg, Lichtenzveig, Judith, H. Kistler, Shea, Terrance, Young, Sarah, Sally-Anne Buck, Kamphuis, Lars, Rachit Saxena, Pande, Suresh, Ma, Li-Jun, Varshney, Rajeev, and Singh, Karam

Abstract

Best BLASTP matches of Foc 38-1 and Fop -37622 SIX protein orthologs and predicted Fop _SIX13 and [ _SIX14 aa sequences. (DOCX 18 kb)

Published
2016
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10. Additional file 4: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors

Author

Williams, Angela, Sharma, Mamta, Thatcher, Louise, Sarwar Azam, Hane, James, Sperschneider, Jana, Kidd, Brendan, Anderson, Jonathan, Ghosh, Raju, Gagan Garg, Lichtenzveig, Judith, H. Kistler, Shea, Terrance, Young, Sarah, Sally-Anne Buck, Kamphuis, Lars, Rachit Saxena, Pande, Suresh, Ma, Li-Jun, Varshney, Rajeev, and Singh, Karam

Abstract

Protein/gene set comparisons across Fusarium sp. (DOCX 11 kb)

Published
2016
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11. Additional file 17: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors

Author

Williams, Angela, Sharma, Mamta, Thatcher, Louise, Sarwar Azam, Hane, James, Sperschneider, Jana, Kidd, Brendan, Anderson, Jonathan, Ghosh, Raju, Gagan Garg, Lichtenzveig, Judith, H. Kistler, Shea, Terrance, Young, Sarah, Sally-Anne Buck, Kamphuis, Lars, Rachit Saxena, Pande, Suresh, Ma, Li-Jun, Varshney, Rajeev, and Singh, Karam

Subjects
food and beverages
Abstract

Pfam domains more abundant on predicted dispensable scaffolds in Fop -37622. (DOCX 16 kb)

Published
2016
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12. Additional file 15: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors

Author

Williams, Angela, Sharma, Mamta, Thatcher, Louise, Sarwar Azam, Hane, James, Sperschneider, Jana, Kidd, Brendan, Anderson, Jonathan, Ghosh, Raju, Gagan Garg, Lichtenzveig, Judith, H. Kistler, Shea, Terrance, Young, Sarah, Sally-Anne Buck, Kamphuis, Lars, Rachit Saxena, Pande, Suresh, Ma, Li-Jun, Varshney, Rajeev, and Singh, Karam

Subjects
food and beverages
Abstract

Pfam domains more abundant on predicted dispensable scaffolds in Fom -5190a. (DOCX 18 kb)

Published
2016
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13. Additional file 3: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors

Author

Williams, Angela, Sharma, Mamta, Thatcher, Louise, Sarwar Azam, Hane, James, Sperschneider, Jana, Kidd, Brendan, Anderson, Jonathan, Ghosh, Raju, Gagan Garg, Lichtenzveig, Judith, H. Kistler, Shea, Terrance, Young, Sarah, Sally-Anne Buck, Kamphuis, Lars, Rachit Saxena, Pande, Suresh, Ma, Li-Jun, Varshney, Rajeev, and Singh, Karam

Abstract

Sequencing data used for genome assemblies. (DOCX 13 kb)

Published
2016
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