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2. Additional file of Transcriptome analysis of a barley breeding program examines gene expression diversity and reveals target genes for malting quality improvement

Author

Muñoz-Amatriaín, María, Yanwen Xiong, Schmitt, Mark R, Bilgic, Hatice, Budde, Allen D, Shiaoman Chao, Smith, Kevin P, and Muehlbauer, Gary J

Subjects
hemic and lymphatic diseases, food and beverages, human activities
Abstract

Additional file of Transcriptome analysis of a barley breeding program examines gene expression diversity and reveals target genes for malting quality improvement

Published
2021
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3. Additional file 2 of Transcriptome analysis of a barley breeding program examines gene expression diversity and reveals target genes for malting quality improvement

Author

Muñoz-Amatriaín, María, Yanwen Xiong, Schmitt, Mark R, Bilgic, Hatice, Budde, Allen D, Shiaoman Chao, Smith, Kevin P, and Muehlbauer, Gary J

Abstract

Additional file 2:Venn diagrams of the differentially expressed genes between the most recent and older genotypes at both time points. The figure shows the intersection among three data sets corresponding to: all probe sets on the Barley1 GeneChip, the differentially expressed genes between the "most recent" lines, and the genes differentially expressed between the "older" lines. (PPT 175 KB)

Published
2021
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5. Additional file 15 of Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.)

Author

Shiaoman Chao, Dubcovsky, Jorge, Dvorak, Jan, Luo, Ming-Cheng, Baenziger, Stephen P, Matnyazov, Rustam, Clark, Dale R, Talbert, Luther E, Anderson, James A, Dreisigacker, Susanne, Glover, Karl, Jianli Chen, Campbell, Kim, Bruckner, Phil L, Rudd, Jackie C, Haley, Scott, Carver, Brett F, Perry, Sid, Sorrells, Mark E, and Akhunov, Eduard D

Subjects
Data_FILES
Abstract

Authors’ original file for figure 6

Published
2020
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6. Additional file 4 of Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.)

Author

Shiaoman Chao, Dubcovsky, Jorge, Dvorak, Jan, Luo, Ming-Cheng, Baenziger, Stephen P, Matnyazov, Rustam, Clark, Dale R, Talbert, Luther E, Anderson, James A, Dreisigacker, Susanne, Glover, Karl, Jianli Chen, Campbell, Kim, Bruckner, Phil L, Rudd, Jackie C, Haley, Scott, Carver, Brett F, Perry, Sid, Sorrells, Mark E, and Akhunov, Eduard D

Abstract

Additional file 4:Relationship between the log probability of data and the number of clusters K. The log probability of data (Ln Pr(X|K)) was plotted as a function of the number of clusters K for different SNP datasets and structure models assuming correlated (top three graphs) and independent (bottom three graphs) alleles frequencies. Means (black bars) and 95% confidence intervals (grey bars) of log probability of data Ln Pr(X|K) for each value of K were calculated from 10 independent runs of Structure with 100,000 burn-in steps and 106 simulation steps. (PPT 132 KB)

Published
2020
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7. Additional file 14 of Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.)

Author

Shiaoman Chao, Dubcovsky, Jorge, Dvorak, Jan, Luo, Ming-Cheng, Baenziger, Stephen P, Matnyazov, Rustam, Clark, Dale R, Talbert, Luther E, Anderson, James A, Dreisigacker, Susanne, Glover, Karl, Jianli Chen, Campbell, Kim, Bruckner, Phil L, Rudd, Jackie C, Haley, Scott, Carver, Brett F, Perry, Sid, Sorrells, Mark E, and Akhunov, Eduard D

Subjects
Data_FILES
Abstract

Authors’ original file for figure 5

Published
2020
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8. Additional file of Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.)

Author

Shiaoman Chao, Dubcovsky, Jorge, Dvorak, Jan, Luo, Ming-Cheng, Baenziger, Stephen P, Matnyazov, Rustam, Clark, Dale R, Talbert, Luther E, Anderson, James A, Dreisigacker, Susanne, Glover, Karl, Jianli Chen, Campbell, Kim, Bruckner, Phil L, Rudd, Jackie C, Haley, Scott, Carver, Brett F, Perry, Sid, Sorrells, Mark E, and Akhunov, Eduard D

Subjects
food and beverages
Abstract

Additional file of Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.)

Published
2020
Full Text
View/download PDF

9. Additional file 11 of Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.)

Author

Shiaoman Chao, Dubcovsky, Jorge, Dvorak, Jan, Luo, Ming-Cheng, Baenziger, Stephen P, Matnyazov, Rustam, Clark, Dale R, Talbert, Luther E, Anderson, James A, Dreisigacker, Susanne, Glover, Karl, Jianli Chen, Campbell, Kim, Bruckner, Phil L, Rudd, Jackie C, Haley, Scott, Carver, Brett F, Perry, Sid, Sorrells, Mark E, and Akhunov, Eduard D

Subjects
Data_FILES
Abstract

Authors’ original file for figure 2

Published
2020
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10. Additional file 13 of Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.)

Author

Shiaoman Chao, Dubcovsky, Jorge, Dvorak, Jan, Luo, Ming-Cheng, Baenziger, Stephen P, Matnyazov, Rustam, Clark, Dale R, Talbert, Luther E, Anderson, James A, Dreisigacker, Susanne, Glover, Karl, Jianli Chen, Campbell, Kim, Bruckner, Phil L, Rudd, Jackie C, Haley, Scott, Carver, Brett F, Perry, Sid, Sorrells, Mark E, and Akhunov, Eduard D

Subjects
Data_FILES
Abstract

Authors’ original file for figure 4

Published
2020
Full Text
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