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11 páginas.- 4 figuras.- referencias.- Additional supporting information can be found online in the Supporting Information section at the end of this article., Soil micronutrients are capital for the delivery of ecosystem functioning and food provision worldwide. Yet, despite their importance, the global biogeography and ecological drivers of soil micronutrients remain virtually unknown, limiting our capacity to anticipate abrupt unexpected changes in soil micronutrients in the face of climate change. Here, we analyzed >1300 topsoil samples to examine the global distribution of six metallic micronutrients (Cu, Fe, Mn, Zn, Co and Ni) across all continents, climates and vegetation types. We found that warmer arid and tropical ecosystems, present in the least developed countries, sustain the lowest contents of multiple soil micronutrients. We further provide evidence that temperature increases may potentially result in abrupt and simultaneous reductions in the content of multiple soil micronutrients when a temperature threshold of 12–14°C is crossed, which may be occurring on 3% of the planet over the next century. Altogether, our findings provide fundamental understanding of the global distribution of soil micronutrients, with direct implications for the maintenance of ecosystem functioning, rangeland management and food production in the warmest and poorest regions of the planet., The sampling included in this study were supported by the European Research Council (ERC) grant 647038 (BIODESERT), the BES grant agreement No. LRB17\1019 (MUSGONET) and the Marie Skłodowska-Curie grant agreement 702057 (CLIMIFUN). We would like to thank the researchers originally involved in the BIODESERT, CLIMIFUN and MUSGONET projects for their help with samplings. E.M.-J. acknowledges the Humboldt Foundation for supporting his research stay in Germany (Fellowship for Experienced Researchers) and a project from the Spanish Ministry of Science and Innovation (PID2020-116578RB-I00). M.D.-B. is supported by a Ramón y Cajal grant (RYC2018-025483-I), a project from the Spanish Ministry of Science and Innovation (PID2020-115813RA-I00) and a project PAIDI 2020 from the Junta de Andalucía (P20_00879). E.G. is supported by the Conselleria de Innovación, Universidades, Ciencia y Sociedad Digital de la Generalitat Valenciana, and the European Social Fund grant APOSTD/2021/188 and European Research Council (ERC) grant 647038. F.T.M. is supported by European Research Council (ERC) grant 647038 and Generalitat Valenciana grant CIDEGENT/2018/041. M.D. and T.W.C. were funded by the Marc R. Benioff Revocable Trust and in collaboration with the World Economic Forum. This article is part of the contract between ETH Zurich and University of Alicante “Mapping terrestrial ecosystem structure at the global scale”. R.O.H. is supported by the Ramón y Cajal program from the MICINN (RYC-2017 22032), a PAIDI 2020 project from the Junta de Andalucía (Ref. 20_00323) and a project from the Spanish Ministry of Science and Innovation (PID2019-106004RA-I00/AEI/10.13039/501100011033). Authors acknowledge support by the Open Access Publication Initiative of Freie Universität Berlin. Open Access funding enabled and organized by Projekt DEAL.

Under a changing climate, soil fungal communities will increasingly be subject to periods of heat stress. These periods can affect the performance of individual fungi and their competition for space and resources. Competition between fungi is strongly controlled by the exudation of inhibitory compounds, resulting in different competitive outcomes that range from overgrowth of the inferior competitor to a deadlock, where the competing fungi inhibit each other. As heat stress can alter the competitive outcome between fungi, the community composition can also change strongly. So far, a general understanding of the mechanisms that drive the competitive outcome between fungi under heat stress is still missing. However, this understanding is essential to assess important community functions, such as decomposition or mediation of plant nutrition, which strongly depend on the fungal community composition. Here, we used a partial differential equation (PDE) model simulating two fungal competitors in a two-dimensional space, to mechanistically explain the observed change of fungal competition under heat stress. The model describes mycelial growth, the production and secretion of antifungal compounds and the synthesis of heat shock proteins of interacting colonies. We found a heat stress-induced lag phase favouring the accumulation of antifungal compounds and the build-up of inhibitor fields. This led to a qualitative change of the competitive outcome, reducing the occurrence of overgrowth by two thirds. The changes in competitive outcome favoured slower growing species, which benefit more strongly from the additional time during a stress-induced lag to build up a defence or block territory that would otherwise be quickly claimed by faster competitors. Our work is an important step towards understanding how environmental changes may lead to qualitative changes in competitive outcomes. Our results show the importance of explicitly including species interactions into studies of climate change effects.

Perfluorobutane sulfonate (PFBS) has been found in increasing concentrations in the environment. However, its effect on litter decomposition in soils is still unclear. Therefore, the effect of PFBS on the decomposition of various litter types was tested, as well as on selected aspects of soil quality. Soil samples were treated with different concentrations of PFBS (0, 1, and 10 µg g–1) and five organic litter materials were used with various C:N ratios. A soil microcosm experiment was performed at 20 °C for 6 weeks. Litter decomposition, soil respiration, enzyme activities, soil pH, water-stable aggregates (WSA), and soil total C and N contents were measured. PFBS treatments were observed to have negligible effects on litter decomposition as well as on other soil properties. This means that in the concentration range examined, this substance has no observable effects on the key soil parameters examined. The present result was inconsistent with the findings of a previous study with similar experimental microcosms but different soils. This study suggests that the effects of PFBS may be less pronounced in the tested soil, but it cannot be concluded that PFBS is harmless in soil ecosystems. A wider range of soil types and PFBS levels should be tested in future studies.

Climate change, biodiversity loss, and chemical pollution are planetary-scale emergencies requiring urgent mitigation actions. As these "triple crises" are deeply interlinked, they need to be tackled in an integrative manner. However, while climate change and biodiversity are often studied together, chemical pollution as a global change factor contributing to worldwide biodiversity loss has received much less attention in biodiversity research so far. Here, we review evidence showing that the multifaceted effects of anthropogenic chemicals in the environment are posing a growing threat to biodiversity and ecosystems. Therefore, failure to account for pollution effects may significantly undermine the success of biodiversity protection efforts. We argue that progress in understanding and counteracting the negative impact of chemical pollution on biodiversity requires collective efforts of scientists from different disciplines, including but not limited to ecology, ecotoxicology, and environmental chemistry. Importantly, recent developments in these fields have now enabled comprehensive studies that could efficiently address the manifold interactions between chemicals and ecosystems. Based on their experience with intricate studies of biodiversity, ecologists are well equipped to embrace the additional challenge of chemical complexity through interdisciplinary collaborations. This offers a unique opportunity to jointly advance a seminal frontier in pollution ecology and facilitate the development of innovative solutions for environmental protection.

Theory and experiments have demonstrated that negative plant-soil feedback (PSF) promotes coexistence between plant species. Plants and soils, however, face the challenge of an increasingly unpredictable environment due to multiple global change factors. Environmental stochasticity induces fluctuations that increase the variability and unpredictability of population dynamics, plant associations in the community and thus properties such as overall productivity. In this paper, we formulate a stochastic version of a classic PSF deterministic model, which describes the outcome of plant species competition in the presence of soil feedback. Especially when the soil feedback is negative, the deterministic expectation is that pulse perturbations to the system (e.g. a drought episode) cause plants and soil to move away from their equilibrium and then return to it. Environmental stochasticity alters this expectation: the system can either settle into a fluctuation regime around the deterministic expectation, or plant species may go extinct. Probability of extinction predictably increases with environmental stochasticity but the more negative the PSF, the more it can counteract the increase in extinction probability caused by increased environmental stochasticity. We stress that in nature the actual impact of PSF will depend on the interactions that link different types of soil organisms to plant species. We conclude that theory shows that plant communities with strong negative PSF are best placed to withstand the risk posed by increased environmental stochasticity but also that we still need more experimental evidence to validate theory and develop applications.

Microplastics are recognized as a factor of global change contaminating many environmental compartments. Agricultural soils are very likely to receive microplastic contamination and are of particular concern due to their role in food production. Microplastic fibers have already been shown to be able to affect soil properties, but their effect on different soil types is poorly understood. Moreover, limited information is available on how the presence of this pollutant can affect soil water erosion processes, which are extremely important issues in many environments. In the light of this, we performed two experiments (carried out on a microscale) to investigate how the presence of polyester microplastic fibers affects soil physical and hydrological parameters and processes such as aggregate formation and soil erosion in three different agricultural soil types (a Vertisol, an Entisol, and an Alfisol). Our data show that the effects of polyester microplastic fibers on soil physical parameters and erosion are strongly dependent on soil type. We found that microplastic fiber contamination can affect soil bulk density, capacitive indicators of soil physical quality, and decrease the formation of new aggregates (labile in the incubation period applied in our experiments) but did not affect their stability in water. However, we found that polyester microplastic fibers reduced soil loss and sediment concentration, especially in the most erodible soils. In this paper, we provide some hypotheses, but certainly future data are still needed to confirm or disprove our hypotheses. Overall, our results highlight the importance of broadly exploring soil properties, such as texture, mineralogy, organic carbon content, etc., to better understand how the various soil types respond to microplastic fiber contamination.

Arbuscular mycorrhizal fungi (AMF) form symbioses with many agricultural crops and can improve plant biomass and health. The performance of the AM symbiosis is context dependent, for example, usually the inoculation of the AMF Rhizophagus irregularis benefits plant biomass, but benefits can be suppressed by high soil fertility levels. Nevertheless, the importance of many other agricultural management practices on AMF, such as fungicides application, is poorly understood. Also, pesticide regulations usually neglect a comprehensive safety testing of fungicides on AMF and lawmakers require empirical support to improve such laws. The objective of this study was to evaluate the effects of spraying fungicides on tomato plants and the subsequent root colonization of plants grown in natural soil containing AMF and inoculated with R. irregularis. We detected that the inoculation of R. irregularis increased the total root colonization of the control plants that did not receive fungicides and that spraying the plants with the fungicides Signum® and Topas® reduced total root colonization. The effect on specific AM fungal structures was variable according to the product. Signum® reduced the occurrence of arbuscules, while Topas® reduced the occurrence of AM hyphae in the colonized roots. Cuprozin® did not reduce total root colonization but reduced the occurrence of AM vesicles. Sampling time was also relevant. Effects were detected at 90 days, but not at 35 days. Our results show that fungicides safety should be evaluated for their effects on root colonization of crops in non-sterilized soils and at adequate sampling time.

An increasing frequency of heat events can affect key organisms related to ecosystem functions. Soil saprobic fungi have important roles in carbon and nutrient cycling in soils, and they are clearly affected by heat events. When tested individually, saprobic soil fungi showed a variety of growth responses to a series of two heat events. However, in nature, these fungi rarely grow alone. Coexistence theory predicts that diversity in the response to stressors can influence the outcome of species interactions and growth. This means that the co-cultivation of different fungi may affect their growth response to heat events. To test if recurring heat events affect fungal growth in small synthetic communities, we evaluated fungi previously known to respond to recurring heat events in experimental small communities composed of two and three species. For the fungi growing in pairs, surprisingly, most of the responses could not be predicted by how the isolates responded individually. In some cases, facilitation or increased competition was observed. For the three fungi growing together, results were also not predicted by the individual or pair responses. Both the heat events and the small communities influenced the growth of the fungi and growth properties emerged from the interactions among isolates and the heat stress. We show that not only do environmental conditions influence fungal interactions and growth rates but also that the co-cultivation of different fungi affects the fungal response to recurring heat events. These results indicate that more complex experimental designs are needed to better understand the effects of recurring heat events and climate change on soil fungi.

Lab teams are dynamic entities in which a lot depends on the principal investigator (PI) and the framework set by them. However, within these parameters, there is a lot of room for lab members to contribute to a happy and productive environment. Often doctoral students or postdocs (or other staff) may underestimate how much of a difference they can really make. Here are 10 simple rules on how to help make a lab a better place; these rules are mostly aimed at building better lab communities, where people help each other, look out for each other, and take an interest in critically questioning the status quo.

Soil biodiversity and related ecosystem functions are neglected in most biodiversity assessments and nature conservation actions. We examined how society, and particularly policy makers, have addressed these factors worldwide with a focus on Europe and explored the role of soils in nature conservation in Germany as an example. We reviewed past and current global and European policies, compared soil ecosystem functioning in- and outside protected areas, and examined the role of soils in nature conservation management via text analyses. Protection and conservation of soil biodiversity and soil ecosystem functioning have been insufficient. Soil-related policies are unenforceable and lack soil biodiversity conservation goals, focusing instead on other environmental objectives. We found no evidence of positive effects of current nature conservation measures in multiple soil ecosystem functions in Europe. In German conservation management, soils are considered only from a limited perspective (e.g., as physicochemical part of the environment and as habitat for aboveground organisms). By exploring policy, evidence, and management as it relates to soil ecosystems, we suggest an integrative perspective to move nature conservation toward targeting soil ecosystems directly (e.g., by setting baselines, monitoring soil threats, and establishing a soil indicator system).La biodiversidad del suelo y las funciones ambientales relacionadas se dejan de lado en la mayoría de las evaluaciones de la biodiversidad y de las acciones de conservación de la naturaleza. Analizamos cómo la sociedad, y particularmente los formuladores de políticas, han abordado estos factores a nivel mundial con un enfoque en Europa y exploramos como ejemplo el papel de los suelos en la conservación de la naturaleza en Alemania. Revisamos las políticas mundiales y europeas en el pasado y en la actualidad, comparamos el funcionamiento ambiental del suelo dentro y fuera de las áreas protegidas y examinamos el papel de los suelos en la gestión de la conservación por medio del análisis de textos. La protección y la conservación de la biodiversidad y el funcionamiento ambiental del suelo han sido insuficientes. Las políticas relacionadas con el suelo son inaplicables y carecen de objetivos de conservación para su biodiversidad, pues se enfocan más bien en otros objetivos ambientales. No descubrimos evidencias de los efectos positivos de las medidas actuales de conservación en múltiples funciones ambientales del suelo en Europa. En la gestión alemana de la conservación, los suelos sólo se consideran desde una perspectiva limitada (p. ej.: como una parte físico química del ambiente y como hábitat para los organismos que habitan por encima de él). Mediante la exploración de la política, evidencias y gestión conforme se relaciona con los ecosistemas del suelo, sugerimos una perspectiva integrada para dirigir a la conservación hacia el enfoque directo sobre los ecosistemas del suelo (p. ej.: al establecer líneas base, monitorear las amenazas para el suelo y establecer un sistema indicador del suelo).【摘要】 大多数生物多样性评估和自然保护行动都忽视了土壤生物多样性及相关生态系统功能。我们研究了社会, 特别是政策制定者, 如何在以欧洲为重点的全世界范围内应对这些问题, 并以德国为例探讨了土壤在自然保护中的作用。本研究综述了过去与现在全球及欧洲的政策, 比较了保护区内外的土壤生态系统功能, 并通过文本分析研究了土壤在自然保护管理中的作用。我们发现, 对土壤生物多样性和土壤生态系统功能的保护仍有欠缺。与土壤有关的政策难以实施, 且缺少土壤生物多样性保护目标, 已有的保护目标更多地集中在其他环境目标上。我们没有发现欧洲目前的自然保护措施对多种土壤生态系统功能产生积极影响的证据。德国的保护管理仅从有限的角度考虑土壤因素(如作为环境的物理化学部分和地上生物的栖息地)。通过探讨与土壤生态系统有关的政策、证据和管理, 我们提出了一个综合性观点, 以促进自然保护朝着直接针对土壤生态系统的方向发展, 如通过设定基线、监测土壤威胁, 以及建立土壤指标体系。【翻译:胡怡思;审校:聂永刚】.

Ecological networks such as plant-pollinator systems and food webs vary in space and time. This variability includes fluctuations in global network properties such as total number and intensity of interactions but also in the local properties of individual nodes such as the number and intensity of species-level interactions. Fluctuations of species properties can significantly affect higher-order network features, e.g. robustness and nestedness. Local fluctuations should therefore be controlled for in applications that rely on null models, especially pattern and perturbation detection. By contrast, most randomization methods for null models used by ecologists treat node-level local properties as hard constraints that cannot fluctuate. Here, we synthesise a set of methods that resolves the limit of hard constraints and is based on statistical mechanics. We illustrate the methods with some practical examples making available open source computer codes. We clarify how this approach can be used by experimental ecologists to detect non-random network patterns with null models that not only rewire but also redistribute interaction strengths by allowing fluctuations in the null model constraints (soft constraints). Null modelling of species heterogeneity through local fluctuations around typical topological and quantitative constraints offers a statistically robust and expanded (e.g. quantitative null models) set of tools to understand the assembly and resilience of ecological networks., Comment: submitted

Protists are abundant, diverse and perform essential functions in soils. Protistan community structure and its change across time or space are traditionally studied at the species level but the relative importance of the processes shaping these patterns depends on the taxon phylogenetic resolution. Using 18S rDNA amplicon data of the Cercozoa, a group of dominant soil protists, from an agricultural field in western Germany, we observed a turnover of relatively closely related taxa (from sequence variants to genus‐level clades) across soil depth; while across soil habitats (rhizosphere, bulk soil, drilosphere), we observed turnover of relatively distantly related taxa, confirming Paracercomonadidae as a rhizosphere‐associated clade. We extended our approach to show that closely related Cercozoa encounter divergent arbuscular mycorrhizal (AM) fungi across soil depth and that distantly related Cercozoa encounter closely related AM fungi across soil compartments. This study suggests that soil Cercozoa community assembly at the field scale is driven by niche‐based processes shaped by evolutionary legacy of adaptation to conditions primarily related to the soil compartment, followed by the soil layer, giving a deeper understanding on the selection pressures that shaped their evolution.

We collated and synthesized previous studies that reported the impacts of microplastics on soil parameters. The data were classified and integrated to screen for the proportion of significant effects, then we suggest several directions to alleviate the current data limitation in future experiments. We compiled 106 datasets capturing significant effects, which were analyzed in detail. We found that polyethylene and pellets (or powders) were the most frequently used microplastic composition and shape for soil experiments. The significant effects mainly occurred in broad size ranges (0.1–1 mm) at test concentrations of 0.1%–10% based on soil dry weight. Polyvinyl chloride and film induced significant effects at lower concentrations compared to other compositions and shapes, respectively. We adopted a species sensitivity distribution (SSD) and soil property effect distribution (SPED) method using available data from soil biota, and for soil properties and enzymes deemed relevant for microplastic management. The predicted-no-effect-concentration (PNEC)-like values needed to protect 95% of soil biota and soil properties was estimated to be between 520 and 655 mg kg−1. This study was the first to screen microplastic levels with a view toward protecting the soil system. Our results should be regularly updated (e.g., quarterly) with additional data as they become available.

Symbioses between plants and fungi are important in both promoting plant fitness and maintaining soil structure. The ways in which these relationships change across an urban gradient is subject to debate. Here we measured root colonisation including the presence of arbuscular mycorrhizal fungi, non-mycorrhizal fungi, and root hair presence. We found no evidence of changes in levels of arbuscular mycorrhizal fungal colonisation across an urban gradient, colonisation levels being driven instead by plant community. However, we did observe an increase in non-mycorrhizal fungal colonisation in association with increasing urbanity. Additionally, we observed an urban-related increase in root hair presence. Using principal component analysis we were able to provide strong evidence for these patterns being driven by an “urban syndrome”, rather than soil chemistry. Our findings have important implications for the wider understanding of abiotic stresses on fungal endophyte presence and shed light on the impacts of urbanity upon plant roots.

Conventional agriculture has relied extensively on the use of fungicides to prevent or control crop diseases. However, some fungicides, particularly broad-spectrum fungicides, not only eliminate target pathogens but also non-target and beneficial soil microbes. This scenario is not only limited to agricultural soil, but this may also potentially occur when neighboring environments are contaminated by fungicides through spray drift. Although concentrations may be sub-lethal, the chemicals may accumulate in the soil when used continuously resulting in more toxic effects. In this study, the effect on the colony extension rate of 31 filamentous soil saprobic fungi, initially isolated from a protected grassland ecosystem, were analyzed under fungicide treatment. These isolates were considered naive (no deliberate exposure), hence presumed to have not developed resistance. Two currently used fungicides with different modes of action were added to Potato Dextrose Agar at varying concentrations. Results showed a wide range of tolerance and sensitivity to isopyrazam and prothioconazole. Fungi belonging to the phylum Basidiomycota were most negatively affected by both fungicides. Phylum Mucoromycota were the most tolerant to prothioconazole while isolates belonging to phylum Ascomycota differed in their responses to both fungicides. Negative effects on the growth rate were more pronounced at higher concentrations except for a few isolates that were inhibited at 1 mg·L−1. A slightly positive effect was also observed in three of the isolates under fungicide treatment. Lastly, the negative impact of fungicides was not associated with the growth strategy of the fungi, whether fast growing or slow growing, rather it is isolate-specific and phylogenetically conserved. The results of this study demonstrate that co-occurring fungi differ in their sensitivity to fungicides even without prior exposure. This difference in sensitivity among co-occurring fungi may result in shifts in community composition of the soil fungal community to the detriment of the more sensitive isolates.

Biodiversity is crucial for the provision of ecosystem functions. However, ecosystems are now exposed to a rapidly growing number of anthropogenic pressures, and it remains unknown whether biodiversity can still promote ecosystem functions under multifaceted pressures. Here we investigated the effects of soil microbial diversity on soil functions and properties when faced with an increasing number of simultaneous global change factors in experimental microcosms. Higher soil microbial diversity had a positive effect on soil functions and properties when no or few (i.e., 1–4) global change factors were applied, but this positive effect was eliminated by the co-occurrence of numerous global change factors. This was attributable to the reduction of soil fungal abundance and the relative abundance of an ecological cluster of coexisting soil bacterial and fungal taxa. Our study indicates that reducing the number of anthropogenic pressures should be a goal in ecosystem management, in addition to biodiversity conservation.

Tire particles (TPs) are a major source of microplastic on land, and considering their chemical composition, they represent a potential hazard for the terrestrial environment. We studied the effects of TPs at environmentally relevant concentrations along a wide concentration gradient (0–160 mg g−1) and tested the effects on plant growth, soil pH and the key ecosystem process of litter decomposition and soil respiration. The addition of TPs negatively affected shoot and root growth already at low concentrations. Tea litter decomposition slightly increased with lower additions of TPs but decreased later on. Soil pH increased until a TP concentration of 80 mg g−1 and leveled off afterwards. Soil respiration clearly increased with increasing concentration of added TPs. Plant growth was likely reduced with starting contamination and stopped when contamination reached a certain level in the soil. The presence of TPs altered a number of biogeochemical soil parameters that can have further effects on plant performance. Considering the quantities of yearly produced TPs, their persistence, and toxic potential, we assume that these particles will eventually have a significant impact on terrestrial ecosystems.

Microplastics enter the soil in a variety of shapes and polymer types altering soil properties with known consequences for plant growth. However, the effects of a range of different microplastic shapes and types on seed germination are mostly unknown. Here, we established a glasshouse experiment that included 12 microplastic types representing different shapes (fibers, films, foams and fragments) and polymers, and mixed each of them with soil at a concentration of 0.4% (w/w). Fifty seeds of Daucus carota were sown and monitored for 49 days to evaluate different germination parameters. Our results showed that microplastic films and fibers decrease seed germination velocity as they may affect soil water status, likely interfering with different phases of seed germination: Seeds may imbibe toxic microplastic leachates, and be affected by a physical blockage; testa rupturing may be delayed as this also depends on water uptake. Microplastic toxic leachates may affect activity of enzymes key for seed germination, and delay embryo growth and radicle emergence. Microplastics, irrespective of their shape and polymer type, increase synchrony of seed germination, which might be linked with microplastics exerting a mild stress on seeds. The final percentage of germination was not affected by microplastics in soil, implying that microplastics did not affect seed viability. Our results showed that microplastics affect seed germination mainly as a function of their shape.

Plant fungal pathogens are an increasing emerging threat as climate change progresses. Sphaeropsis sapinea (syn. Diplodia sapinea), the causal fungal agent of Diplodia tip blight, is a major pathogen of pines of forestry and ornamental relevance in Europe and worldwide. Here, we combined molecular-based field surveys in a common-garden setting and across an elevation gradient with historical records, cultivation-based growth experiments and microscopy to report on host and abiotic constraints on the distribution of S. sapinea. Using the arboretum at the Botanical Garden Berlin, Germany, to control for environmental variability, S. sapinea was detected on all seven host Pinus species we studied. However, P. sylvestris is the only species in which the fungus was detected in symptomless needles at the arboretum, and the most frequently recorded host for over a century, suggesting that it is the main, and perhaps, potential original host. In addition, sampling symptomatic needles in four out of the seven same species across a gradient from 200 to 2,100 m of elevation in the French Alps, S. sapinea was not detected at elevation higher than 800 m. Abiotic constraints were also supported by reduced growth of isolates of S. sapinea at low temperature under controlled conditions, but a 35°C prior stress exposure increased the subsequent growth of S. sapinea within its optimal temperature range (20-30°C). Altogether, our study thus not only suggests that S. sapinea is more likely to cause tip blight in P. sylvestris compared to the other species we studied, but also that in the current context of global climate change with predicted temperature increases, the fungus could infect a wider range of pine hosts and locations worldwide.

The microbial communities inhabiting urban soils determine the functioning of these soils, in regards to their ability to cycle nutrients and support plant communities. In an increasingly urbanized world these properties are of the utmost importance, and the microbial communities responsible are worthy of exploration. We used 53 grassland sites spread across Berlin to describe and explain the impacts of urbanity and other environmental parameters upon the diversity and community composition of four microbial groups. These groups were (i) the Fungi, with a separate dataset for (ii) the Glomeromycota, (iii) the Bacteria, and (iv) the protist phylum Cercozoa. We found that urbanity had distinct impacts on fungal richness, which tended to increase. Geographic distance between sites and soil chemistry, in addition to urbanity, drove microbial community composition, with site connectivity being important for Glomeromycotan communities, potentially due to plant host communities. Our findings suggest that many microbial species are well adapted to urban soils, as supported by an increase in diversity being a far more common result of urbanity than the reverse. However, we also found distinctly separate distributions of operational taxonomic unit (OTU)s from the same species, shedding doubt of the reliability of indicator species, and the use of taxonomy to draw conclusion on functionality. Our observational study employed an extensive set of sites across an urbanity gradient, in the region of the German capital, to produce a rich microbial dataset; as such it can serve as a blueprint for other such investigations.

Root traits respond to drought in a species-specific manner, but little is known about how soil fungal communities and root traits respond to drought in concert. In a glasshouse experiment, we determined the response of soil pathogens, saprotrophs, and mutualistic and all fungi associated with the roots of 24 plant species subjected to drought. At harvest, soil fungal communities were characterized by sequencing. Data on root traits were extracted from a previously published work. Differences in fungal beta diversity between drought and control were plant species specific. For some species, saprotrophic fungi increased in relative abundance and richness with drought, whereas mutualistic fungi showed the opposite pattern. Community structure of pathogenic fungi was plant species specific but was slightly affected by drought. Pathogen composition was correlated with specific root surface area and root : shoot, saprotroph abundance with root tissue density, whereas mutualist composition was correlated with root : shoot. All these were the fungal attributes that best predicted shoot mass. Fungal response to drought depended highly on the fungal group and was related to root trait adjustments to water scarcity. This provides new insights into the role that root trait adjustments to drought may have in modulating plant���fungus interactions in grasslands ecosystems.

1. Microplastics in soils have become an important threat for terrestrial systems as they may potentially alter the geochemical/biophysical soil environment and can interact with drought. As microplastics may affect soil water content, this could exacerbate the well-known negative effects of drought on ecosystem functionality. Thus, functions including litter decomposition, soil aggregation or those related with nutrient cycling can be altered. Despite this potential interaction, we know relatively little about how microplastics, under different soil water conditions, affect ecosystem functions and multifunctionality. 2. To address this gap, we performed an experiment using grassland plant communities growing in microcosms. Microplastic fibres (absent, present) and soil water conditions (well-watered, drought) were applied in a fully factorial design. At harvest, we measured soil ecosystem functions related to nutrient cycling (beta-glucosaminidase, beta-D-cellobiosidase, phosphatase, beta-glucosidase enzymes), respiration, nutrient retention, pH, litter decomposition and soil aggregation (water stable aggregates). As terrestrial systems provide these functions simultaneously, we also assessed ecosystem multifunctionality, an index that encompasses the array of ecosystem functions measured here. 3. We found that the interaction between microplastic fibres and drought affected ecosystem functions and multifunctionality. Drought had negatively affected nutrient cycling by decreasing enzymatic activities by up to similar to 39%, while microplastics increased soil aggregation by similar to 18%, soil pH by similar to 4% and nutrient retention by up to similar to 70% by diminishing nutrient leaching. Microplastic fibres also impacted soil enzymes, respiration and ecosystem multifunctionality, but importantly, the direction of these effects depended on soil water status. That is, under well-watered conditions, these functions decreased with microplastic fibres by up to similar to 34% while under drought they had similar values irrespective of the microplastic presence, or tended to increase with microplastics. Litter decomposition had a contrary pattern increasing with microplastics by similar to 6% under well-watered conditions while decreasing to a similar percentage under drought. 4. Synthesis and applications. Single ecosystem functions can be positively or negatively affected by microplastics fibres depending on soil water status. However, our results suggest that microplastic fibres may cause negative effects on ecosystem soil multifunctionality of a similar magnitude as drought. Thus, strategies to counteract this new global change factor are necessary.

Soil ecological stoichiometry provides powerful theories to integrate the complex interplay of element cycling and microbial communities into biogeochemical models. One essential assumption is that microbes maintain stable C:N:P (carbon:nitrogen:phosphorus) ratios independent of resource supply, although such homeostatic regulations have rarely been assessed in individual microorganisms. Here, we report an unexpected high flexibility in C:N and C:P values of saprobic fungi along nutrient supply gradients, overall ranging between 7-126 and 20-1488, respectively, questioning microbial homeostasis. Fungal N:P varied comparatively less due to simultaneous reductions in mycelial N and P contents. As a mechanism, internal recycling processes during mycelial growth and an overall reduced N and P uptake appear more relevant than element storage. The relationships among fungal stoichiometry and growth disappeared in more complex media. These findings affect our interpretation of stoichiometric imbalances among microbes and soils and are highly relevant for developing microbial soil organic carbon and nitrogen models.

The stability of plant biomass production in the face of environmental change is fundamental for maintaining terrestrial ecosystem functioning, as plant biomass is the ultimate source of energy for nearly all life forms. However, most studies have focused on the stabilising effect of plant diversity, neglecting the effect of soil biodiversity, the largest reservoir of biodiversity on Earth. Here we investigated the effects of plant and soil biodiversity on the temporal stability of biomass production under varying simulated precipitation in grassland microcosms. Soil biodiversity loss reduced temporal stability by suppressing asynchronous responses of plant functional groups. Greater plant diversity, especially in terms of functional diversity, promoted temporal stability, but this effect was independent of soil biodiversity loss. Moreover, multitrophic biodiversity, plant and soil biodiversity combined, was positively associated with temporal stability. Our study highlights the importance of maintaining both plant and soil biodiversity for sustainable biomass production.

Microplastic pollution is a topic of increasing concern, especially since this issue was first addressed in soils. Results have so far been variable in terms of effects, suggesting that there is substantial context-dependency in microplastic effects in soil. To better define conditions that may affect microplastic-related impacts, we here examined effects as a function of microplastic shape and polymer type, and we tested if effects on soil properties and soil microbial activities change with incubation time. In our laboratory study, we evaluated twelve different secondary microplastics representing four microplastic shapes: fibers, films, foams and fragments; and eight polymer types: polyamide (PA), polycarbonate (PC), polyethylene (PE), polyester (PES), polyethylene terephthalate (PET), polypropylene (PP), polystyrene (PS), and polyurethane (PU). We mixed the microplastics with a sandy soil (0.4% w/w) and incubated at 25°C for 31 days. Then, we collected soil samples on the 3rd, 11th, and 31st day, and measured soil pH, respiration and four enzyme activities (soil enzymatic activities). Our results showed that microplastics could affect soil pH, respiration and enzymatic activities depending on microplastic shape and polymer type, effects that were altered with incubation time. Soil pH increased with foams and fragments and overall decreased in the first days of incubation and then increased. Soil respiration increased with PE foams and was affected by the incubation time, declining over time. Overall, acid phosphatase activity was not affected by shape or polymer type. β-D-glucosidase activity decreased with foams, cellobiosidase activity decreased with fibers, films and foams while N-acetyl-β-glucosaminidase activities decreased with fibers and fragments. Enzymatic activities fluctuated during the incubation time, except N-acetyl-β-glucosaminidase, which showed a declining trend with incubation time. Enzymatic activities were negatively correlated with soil pH and this relationship was less strong when microplastics were added to the soil. Our study adds to the evidence that research should embrace the complexity and diversity of microplastics, highlighting the role of microplastic shape and polymer type in influencing effects; additionally, we show that incubation time is also a parameter to consider, as effects are dynamic even in the short term.

Previous microplastic research under laboratory conditions has focused on microplastics that are homogeneously mixed into test media, in order to maximize test reproducibility and uniform bio-accessibility. Here we specifically focused on testing the idea that microplastics in soil could affect adjacent soil layers not containing microplastic themselves. We included two different microplastics (low-density polyethylene films and polyacrylonitrile fibers) and carried out a soil column test consisting of three different vertical layers (0–3 cm, top, control soil; 3–6 cm, middle, microplastic-containing soil; 6–9 cm, bottom, control soil). Our study shows that microplastic-containing soil layers can act as an anthropogenic barrier in the soil column, interrupting the vertical water flow. These changes directly affected the water content of adjacent layers, and changes in the proportion of soil aggregate sizes occurred for each depth of the soil columns. We also observed that these physical changes trigger changes in soil respiration, but do not translate to effects on enzyme activities. These results imply that the soil environment in non-contaminated parts of the soil can be altered by microplastic contamination in adjacent layers, as might occur for example during ploughing on agricultural fields. More generally, our results highlight the need to further examine effects of microplastic in experiments that do not treat this kind of pollution as uniformly distributed.

Microplastics are a diverse and ubiquitous contaminant, a global change driver with potential to alter ecosystem properties and processes. Microplastic-induced effects in soils are manifold as microplastics differ in a variety of properties among which the shape is of special interest. Our knowledge is limited regarding the impact of various microplastic shapes on soil processes. Therefore, we conducted this two-part research comprising a meta-analysis on published literature and a lab experiment focusing on microplastic shapes- and polymer-induced effects on soil aggregation and organic matter decomposition. We here focus on fibers, films, foams and particles as microplastic shapes. In the meta-analysis, we found a strong research focus on fibrous and particulate microplastic materials, with films and foams neglected. Our experiment showed that microplastic shapes are important modulators of responses in soil aggregation and organic matter decomposition. Fibers, irrespective of their chemistry, negatively affected the formation of aggregates. However, for other shapes like foams and particles, the polymer identity is an important factor co-modulating the soil responses. Further research is needed to generate a data-driven foundation to permit a better mechanistic understanding of the importance and consequences of microplastics added to soils.

A 2-year outdoor mesocosm experiment was carried out to determine the effects of high C amendments (HCAs; wheat straw and sawdust) compared to a control with no addition of HCAs (no-HCA) and 2 different crop rotation systems (spring barley/winter barley and faba bean/winter barley) on soil bacterial communities using a molecular barcoding approach. Samples were analyzed after pre-crop harvest (T1) and harvest of winter barley (T2). Our data demonstrate a clear drop in bacterial diversity after winter barley harvest in the no-HCA and wheat straw treatment compared to the pre-crops. Sawdust application had a stabilizing effect on bacterial diversity compared to the pre-crops and induced an increase in carbon (C) stocks in soil which were however negatively correlated with yields. Main responders in the no-HCA and wheat straw treatment compared to the pre-crops were bacteria of the phyla Actinobacteria and Bacteroidetes which were enriched and bacteria belonging to Firmicutes, Gemmatimonadetes, Proteobacteria, and Gemmatimonadaceae which were depleted. Overall differences between wheat straw–amended and no-HCA control samples were small and included single ASVs from various phyla. In sawdust-amended samples, only a shift of some Proteobacteria families was observed compared to the no-HCA control. Overall, pre-crop plant species had small influence on the observed response pattern of the soil microbiome towards the amendments and was only visible for wheat straw.

Summary: Global environmental change poses threats to plant and soil biodiversity. Yet, whether soil biodiversity loss can further influence plant community’s response to global change is still poorly understood. We created a gradient of soil biodiversity using the dilution‐to‐extinction approach, and investigated the effects of soil biodiversity loss on plant communities during and following manipulations simulating global change disturbances in experimental grassland microcosms. Grass and herb biomass was decreased by drought and promoted by nitrogen deposition, and a fast recovery was observed following disturbances, independently of soil biodiversity loss. Warming promoted herb biomass during and following disturbance only when soil biodiversity was not reduced. However, legumes biomass was suppressed by these disturbances, and there were more detrimental effects with reduced soil biodiversity. Moreover, soil biodiversity loss suppressed the recovery of legumes following these disturbances. Similar patterns were found for the response of plant diversity. The changes in legumes might be partly attributed to the loss of mycorrhizal soil mutualists. Our study shows that soil biodiversity is crucial for legume persistence and plant diversity maintenance when faced with environmental change, highlighting the importance of soil biodiversity as a potential buffering mechanism for plant diversity and community composition in grasslands.

Earthworms are an important soil taxon as ecosystem engineers, providing a variety of crucial ecosystem functions and services. Little is known about their diversity and distribution at large spatial scales, despite the availability of considerable amounts of local-scale data. Earthworm diversity data, obtained from the primary literature or provided directly by authors, were collated with information on site locations, including coordinates, habitat cover, and soil properties. Datasets were required, at a minimum, to include abundance or biomass of earthworms at a site. Where possible, site-level species lists were included, as well as the abundance and biomass of individual species and ecological groups. This global dataset contains 10,840 sites, with 184 species, from 60 countries and all continents except Antarctica. The data were obtained from 182 published articles, published between 1973 and 2017, and 17 unpublished datasets. Amalgamating data into a single global database will assist researchers in investigating and answering a wide variety of pressing questions, for example, jointly assessing aboveground and belowground biodiversity distributions and drivers of biodiversity change.

In this study the impacts of urbanity on physical soil properties were explored by measuring water stable aggregates, combined particle size, infiltration rate and hydrophobicity across an urban gradient. The use of a gradient allowed for the relative importance of different environmental drivers to be assessed. We sampled 54 sites across Berlin and used a pre-existing database of environmental variables to extract three main axes of variation relating to urbanity, soil nutrient content, and heavy metal content. These axes, along with site age, were used to explore the drivers of changes in physical properties across an urban landscape. The percentage of water stable aggregates was found to decrease with urbanity, whilst infiltration rate was found to increase. Hydrophobicity did not appear to be influenced by urbanity but interacted with both infiltration rate and water stable aggregates. Combined particle sizes in the soil were found to increase with urbanity. Our findings provide evidence for urbanity being an important driver of variation in physico-chemical soil properties, which has implications for the provision of ecosystem services by these soils.

Microbes play an essential role in soil functioning including biogeochemical cycling and soil aggregate formation. Yet, a major challenge is to link microbes to higher trophic levels and assess consequences for soil functioning. Here, we aimed to assess how microbial consumers modify microbial community composition (PLFA markers), as well as C dynamics (microbial C use, SOC concentration and CO2 emission) and soil aggregation. We rebuilt two simplified soil consumer-prey systems: a bacterial-based system comprising amoebae (Acanthamoeba castellanii) feeding on a microbial community dominated by the free-living bacterium Pseudomonas fluorescens and a fungal-based system comprising collembolans (Heteromurus nitidus) grazing on a microbial community dominated by the saprotrophic fungus Chaetomium globosum. The amoeba A. castellanii did not affect microbial biomass and composition, but it enhanced the formation of soil aggregates and tended to reduce their stability. Presumably, the dominance of P. fluorescens, able to produce antibiotic toxins in response to the attack by A. castellanii, was the main cause of the unchanged microbial community composition, and the release of bacterial extracellular compounds, such as long-chained polymeric substances or proteases, in reaction to predation was responsible for the changes in soil aggregation as a side effect. In the fungal system, collembolans significantly modified microbial community composition via consumptive and non-consumptive effects including the transport of microbes on the body surface. As expected, fungal biomass promoted soil aggregation and was reduced in the presence of H. nitidus. Remarkably, we also found an unexpected contribution of changes in bacterial community composition to soil aggregation. In both the bacterial and fungal systems, bacterial and fungal communities mainly consumed C from soil organic matter (rather than the litter added). Increased fungal biomass was associated with an increased capture of C from added litter, and the presence of collembolans levelled off this effect. Neither amoebae nor collembolans altered SOC concentrations and CO2 production. Overall, the results demonstrated that trophic interactions are important for achieving a mechanistic understanding of biological contributions to soil aggregation and may occur without major changes in C dynamics and with or without changes in the composition of the microbial community.

Drought can strongly modify plant diversity and ecosystem processes. As droughts are expected to intensify in the future, it is important to better understand plant responses to this global driver. Root traits are an overlooked but powerful predictor of plant responses to drought because they are in direct contact with the soil environment and are responsible for taking up nutrients and water. Here, we determine which root traits are sensitive to drought and the magnitude of that response. We also tested whether root trait relationships with shoot biomass are affected by drought and to what extent all these responses depend on plant species identity. To do so, we conducted a glasshouse experiment with 24 plant species grown in pots (10 replicates per species), which included grasses, forbs and legumes. All replicates were well watered during the first month and then half of them were kept under drought (30% water holding capacity [WHC]), with the other half serving as control (70% WHC). After 2 months of treatment, leaf and root traits were measured. Leaf traits had a strong and more uniform response to drought compared to root traits. Root trait responses were variable and differed among plant species. Overall, grasses and several forbs had increased root diameter with drought while forbs had decreased specific root surface area (SRSA) and specific root length (SRL). Increase of root diameter and reduction of root elongation or sacrificing fine roots are different strategies that may promote nutrient and water acquisition, depending on plant species identity. Our results identify changes in root morphological traits as mechanisms to likely tolerate drought and highlight that, although such drought responses are species-specific, they are phylogenetically clustered. A freePlain Language Summarycan be found within the Supporting Information of this article.

Climate change can trigger shifts in community structure and may therefore pose a severe threat to soil microbial communities, especially in high northern latitudes such as the Arctic. Arctic soils are covered by snow and ice throughout most of the year. This insulation shields them from high temperature variability and low surface temperatures. If this protective layer thaws, these soils are predicted to warm up at 1.5x to 4x the rate of other terrestrial biomes. In this study, we sampled arctic soils from sites with different elevations in Alaska, incubated them for 5 months with a simulated, gradual or abrupt temperature increase of +5 °C, and compared bacterial and fungal community compositions after the incubation. We hypothesized that the microbial communities would not significantly change with a gradual temperature treatment, whereas an abrupt temperature increase would decrease microbial diversity and shift community composition. The only differences in community composition that we observed were, however, related to the two elevations. The abrupt and gradual temperature increase treatments did not change the microbial community composition as compared to the control indicating resistance of the microbial community to changes in temperature. This points to the potential importance of microbial dormancy and resting stages in the formation of a “buffer” against elevated temperatures. Microbial resting stages might heavily contribute to microbial biomass and thus drive the responsiveness of arctic ecosystems to climate change.

The role of mutualisms in mediating temporal stability in an ecosystem has been debated extensively. Here, we focus on how a ubiquitous mutualism, arbuscular mycorrhiza, influences temporal stability of a key ecosystem process, ecosystem respiration. We discriminated between two forms of temporal stability, temporal variability and resilience, and hypothesized that excluding arbuscular mycorrhiza would be detrimental for both of them. We analyzed a set of 10 parallel manipulation experiments to assess how excluding arbuscular mycorrhiza modulates temporal stability compared to other common experimental factors. We quantified the temporal variability of ecosystem respiration and the resilience to experimental perturbations (i.e., pulses, stresses, and a disturbance) following manipulations of mycorrhizal state. We observed lower temporal variability in the absence of arbuscular mycorrhiza in discord to our main hypothesis. Manipulating arbuscular mycorrhiza had a stronger impact on temporal variability than the pulse (application of urea), the stress (addition of salt), and a disturbance (experimental defoliation) but weaker than excluding primary producers or comparing across different plant species. Resilience to experimental perturbations declined in non‐mycorrhizal microcosms. We present an empirical study on how mutualisms impact temporal stability. Arbuscular mycorrhiza differentially alters temporal variability and resilience, highlighting that generalizing across different forms of temporal stability could be misleading.

Soils harbor a substantial fraction of the world’s biodiversity, contributing to many crucial ecosystem functions. It is thus essential to identify general macroecological patterns related to the distribution and functioning of soil organisms to support their conservation and consideration by governance. These macroecological analyses need to represent the diversity of environmental conditions that can be found worldwide. Here we identify and characterize existing environmental gaps in soil taxa and ecosystem functioning data across soil macroecological studies and 17,186 sampling sites across the globe. These data gaps include important spatial, environmental, taxonomic, and functional gaps, and an almost complete absence of temporally explicit data. We also identify the limitations of soil macroecological studies to explore general patterns in soil biodiversity-ecosystem functioning relationships, with only 0.3% of all sampling sites having both information about biodiversity and function, although with different taxonomic groups and functions at each site. Based on this information, we provide clear priorities to support and expand soil macroecological research.

Offspring size is a key trait for understanding the reproductive ecology of species, yet studies addressing the ecological meaning of offspring size have so far been limited to macro-organisms. We consider this a missed opportunity in microbial ecology and provide what we believe is the first formal study of offspring-size variation in microbes using reproductive models developed for macro-organisms. We mapped the entire distribution of fungal spore size in the arbuscular mycorrhizal (AM) fungi (subphylum Glomeromycotina) and tested allometric expectations of this trait to offspring (spore) output and body size. Our results reveal a potential paradox in the reproductive ecology of AM fungi: while large spore-size variation is maintained through evolutionary time (independent of body size), increases in spore size trade off with spore output. That is, parental mycelia of large-spored species produce fewer spores and thus may have a fitness disadvantage compared to small-spored species. The persistence of the large-spore strategy, despite this apparent fitness disadvantage, suggests the existence of advantages to large-spored species that could manifest later in fungal life history. Thus, we consider that solving this paradox opens the door to fruitful future research establishing the relationship between offspring size and other AM life history traits.

Arbuscular mycorrhiza represents a ubiquitous nutritional symbiosis between the roots of most terrestrial plant species and fungi of the subphylum Glomeromycotina (Spatafora et al., 2016). Terrestrial habitats are unlikely to be limited in propagules of arbuscular mycorrhizal fungi (AMF), because AMF propagule densities build up fast in vegetated soil (e.g. Gould et al., 1996). We start to appreciate, however, that shortages in AMF propagules are common in some habitats, such as agricultural fields subject to intensive farming (Schnoor et al., 2011; Manoharan et al., 2017). Forest habitats in the temperate region might also be occasionally AMF propagule limited (Veresoglou et al., 2017), but to the best of our understanding this has not been shown with empirical data.

With growing populations and climate change, assuring food and nutrition security is an increasingly challenging task. Climate smart and sustainable agriculture, that is, conceiving agriculture to be resistant and resilient to a changing climate while keeping it viable in the long term, is probably the best solution. The role of soil biota and particularly arbuscular mycorrhizal (AM) fungi in this new agriculture is believed to be of paramount importance. However, the large nutrient pools and the microbiota of subsoils are rarely considered in the equation. Here we explore the potential contributions of subsoil AM fungi to this agriculture and suggest future research goals that would allow us to maximize their benefits.

Microplastic pollution and global warming are two aspects of global change that potentially influence soil quality; yet little is known about their effects on soil aggregation, a key determinant of soil quality. Given the importance of fungi for soil aggregation, we investigated the impacts of rising temperature and microplastic fibers on aggregation by carrying out a soil incubation experiment in which we inoculated soil individually with specific strains of soil saprobic fungi (Chaetomium elatum, Truncatella angustata, Fusarium redolens, Mucor fragilis, and Fusarium sp.). Our treatments were temperature (ambient temperature of 25℃ or temperature increased by 3℃, abruptly versus gradually) and microplastic fibers (control and 0.4% w/ w). We evaluated the percentage of water stable aggregates (WSA) and hydrolysis of fluorescein diacetate (FDA). Microplastic fiber addition was the main factor influencing the WSA, decreasing the percentage of WSA except in soil incubated with M. fragilis, and mitigated the effects of temperature or even caused more pronounced decrease in WSA under elevated temperature. We also observed clear differences between temperature change patterns. Our study shows that the interactive effects of warming and microplastic fibers are important to consider when evaluating effects of global change on soil aggregation and potentially other soil processes.

Soil carbon is essential for soil and ecosystem functioning. Its turnover and storage in soil are multifaceted processes that involve microbial activity in complex physical matrices. Biological litter, which include plants, animals, and microorganisms, is decomposed in soil stimulating soil biota (archaea, bacteria, fungi, protists, and animals) activity and yielding soil organic matter (SOM). Such decomposition processes are influenced by local physico-chemical characteristics including the spatial distribution of aggregates and pores. More refined analytical tools are needed to better understand these processes, especially considering the spatial 3D structure of soil matrices. Using synchrotron radiation (X-ray) micro computerized tomography (SR-μCT), we tested different contrast agents (staining methods) based on silver (Ag), eosin (Br based), and liquid and gaseous iodine (I) in order to spatially image biological material and SOM in soil samples. We also performed K-edge SR-μCT for the Ag and I2 treatments and conventional μCT for additional soil samples applying the I2 treatment. Our results indicated that I2 was the most efficient contrast method for SR-μCT imaging of soil samples. I2 qualitatively improved the images, but mainly, by using the K-edge SR-μCT, this method provided a powerful tool to determine the spatial location of SOM. We acknowledge that the use of SR-μCT is an expensive technique to study soil samples, which comes with bottlenecks in terms of access to facilities and measurement time. Nevertheless, we show that the I2 treatment improved soil images also using standard μCT. In conventional μCT the I2 treatment improved the visualization of biological material and consequently improved the qualitative analysis of fine plants roots and micro-fauna (Collembola). This improvement may have a positive implication in soil biology, by improving a non-destructive method to detect fungi (SR-μCT), soil fauna (conventional μCT) and roots in undisturbed soil samples. An unexpected finding was that the I2 treatment also stained the plastic sample containers (nylon and polyimide), indicating the potential for the I2 staining procedure to be applied for the detection of plastic pollution in soil samples.

Flows of water, soil, litter, and anthropogenic materials in and around rivers lead to the mixing of their resident microbial communities and subsequently to a resultant community distinct from its precursors. Consideration of these events through a new conceptual lens, namely, community coalescence, could provide a means of integrating physical, environmental, and ecological mechanisms to predict microbial community assembly patterns better in these habitats. Here, we review field studies of microbial communities in riverine habitats where environmental mixing regularly occurs, interpret some of these studies within the community coalescence framework and posit novel hypotheses and insights that may be gained in riverine microbial ecology through the application of this concept. Particularly in the face of a changing climate and rivers under increasing anthropogenic pressures, knowledge about the factors governing microbial community assembly is essential to forecast and/or respond to changes in ecosystem function. Additionally, there is the potential for microbial ecology studies in rivers to become a driver of theory development: riverine systems are ideal for coalescence studies because regular and predictable environmental mixing occurs. Data appropriate for testing community coalescence theory could be collected with minimal alteration to existing study designs.

In late-successional environments, low in available nutrient such as the forest understory, herbaceous plant individuals depend strongly on their mycorrhizal associates for survival. We tested whether in temperate European forests arbuscular mycorrhizal (AM) woody plants might facilitate the establishment of AM herbaceous plants in agreement with the mycorrhizal mediation hypothesis. We used a dataset spanning over 400 vegetation plots in the Weser-Elbe region (northwest Germany). Mycorrhizal status information was obtained from published resources, and Ellenberg indicator values were used to infer environmental data. We carried out tests for both relative richness and relative abundance of herbaceous plants. We found that the subset of herbaceous individuals that associated with AM profited when there was a high cover of AM woody plants. These relationships were retained when we accounted for environmental filtering effects using path analysis. Our findings build on the existing literature highlighting the prominent role of mycorrhiza as a coexistence mechanism in plant communities. From a nature conservation point of view, it may be possible to promote functional diversity in the forest understory through introducing AM woody trees in stands when absent.

Most statistical models assume linearity and few variable interactions, even though real‐world ecological patterns often result from nonlinear and highly interactive processes. We here introduce a set of novel empirical modeling techniques which can address this mismatch: statistically reinforced machine learning. We demonstrate the behaviors of three techniques (conditional inference tree, model‐based tree, and permutation‐based random forest) by analyzing an artificially generated example dataset that contains patterns based on nonlinearity and variable interactions. The results show the potential of statistically reinforced machine learning algorithms to detect nonlinear relationships and higher‐order interactions. Estimation reliability for any technique, however, depended on sample size. The applications of statistically reinforced machine learning approaches would be particularly beneficial for investigating (1) novel patterns for which shapes cannot be assumed a priori, (2) higher‐order interactions which are often overlooked in parametric statistics, (3) context dependency where patterns change depending on other conditions, (4) significance and effect sizes of variables while taking nonlinearity and variable interactions into account, and (5) a hypothesis using parametric statistics after identifying patterns using statistically reinforced machine learning techniques.

Arbuscular mycorrhizal fungi are asexual, obligately symbiotic fungi with unique morphology and genomic structure, which occupy a dual niche, that is, the soil and the host root. Consequently, the direct adoption of models for community assembly developed for other organism groups is not evident. In this paper we adapted modern coexistence and assembly theory to arbuscular mycorrhizal fungi. We review research on the elements of community assembly and coexistence of arbuscular mycorrhizal fungi, highlighting recent studies using molecular methods. By addressing several points from the individual to the community level where the application of modern community ecology terms runs into problems when arbuscular mycorrhizal fungi are concerned, we aim to account for these special circumstances from a mycocentric point of view. We suggest that hierarchical spatial structure of arbuscular mycorrhizal fungal communities should be explicitly taken into account in future studies. The conceptual framework we develop here for arbuscular mycorrhizal fungi is also adaptable for other host-associated microbial communities.

In der vorliegenden Arbeit konnte gezeigt werden, dass der neue multipolare gek��hlte Radiofrequenz-Katheter zur Isolation der Pulmonalvenen effektiv ist. Unter Verwendung modifizierter Energiesettings konnte die Inzidenz von ��sophagusl��sionen erheblich reduziert werden. Die Anwendung im breiten Patientenkollektiv wird zeigen, ob sich diese Ergebnisse best��tigen lassen und der nMARQTM-Katheter als sicheres Ablationssystem f��r eine vereinfachte Durchf��hrung der Pulmonalvenenisolation einsetzbar ist, ohne eine erh��hte Rate an ��sophagusl��sionen. Die Vorhofflimmerablation unter Verwendung des SenseiTM- Navigationssystems (Hansen Medical) mit modifizierten Energiesettings ist effektiv zur Ablation einer Mitralisthmuslinie. Im Vergleich zur manuellen Ablation ist die Notwendigkeit epikardialer Ablationen zum Erreichen eines bidirektionalen Isthmus-Blocks weniger h��ufig. Somit kann zuk��nftig mit Hilfe des SenseiTM-Navigationssystem die Ablation der Mitralisthmuslinie im linken Vorhof optimiert werden. Die Langzeit-Effektivit��t des SenseiTM- Navigationssystems im Vergleich zur manuellen Ablation im Rahmen der Vorhofflimmerablation konnte in der vorliegenden Arbeit gezeigt werden. Somit ist eine erfolgreiche Anwendung bei vergleichbarer Komplikationsrate im Rahmen der Vorhofflimmer-Ablation gegeben. Auch wenn im Vergleich zur manuellen Katheterablation vergleichbare Ergebnisse des SenseiTM-Navigationssystems hinsichtlich der Pulmonalvenenisolation gezeigt werden konnten, ist diese Technologie ein vielversprechender Ansatz f��r eine zuk��nftige Optimierung der Vorhofflimmer-Ablation. Die noch ausstehenden Ergebnisse der randomisierten ���Man and Machine��� Studie werden weiteren Aufschluss dar��ber geben, welche M��glichkeiten die robotische Ablation im Vergleich zur manuellen Radiofrequenz-Ablation bieten kann (98). Das Rotor-Mapping ist eine vielversprechende neue Technologie im Rahmen der Vorhofflimmer-Ablation. Bisher konnte noch kein reproduzierbares intrakardiales Elektrogramm identifiziert werden um die Rotor-Regionen mit konventionellen Kathetern im linken Vorhof n��her einzugrenzen. Trotz erster ��berzeugender Langzeit-Daten ist die Rotor-Technologie noch nicht abschliessend evaluiert und bedarf weiterer Studien (65). Weitere Systeme zur Rotoranalyse wie das nichtinvasive bodysurface-mapping sind derzeit in Evaluation und k��nnten zuk��nftig beitragen schon vor der eigentlichen Prozedur eine Rhythmusst��rung n��her zu lokalisieren (99). Es konnte ferner gezeigt werden, dass die Langzeit-Effektivit��t der Vorhofflimmerablation bei Patienten mit reduzierter systolischer linksventrikul��rer Funktion insbesondere hinsichtlich der Verbesserung der linksventrikul��ren Funktion von Bedeutung ist. Die aktuell noch rekrutierende AMICA-Studie sowie CASTLE-AF-Studie (Clinical trials.org) werden im randomisierten Vergleich zeigen, inwieweit die Katheterablation im Vergleich zur medikament��sen Therapie die linksventrikul��re Funktion verbessern kann., In the present work it was shown that the novel multipolar irrigated radiofrequency ablation catheter is effective for pulmonary vein isolation. Using modified energy settings, the incidence of esophageal lesions has been significantly reduced. The application in a broad patient population will show, whether it is possible to confirm these results and whether the nMARQTM catheter can be used as a safe ablation tool for a simplified approach to pulmonary vein isolation without an increased incidence of esophageal lesions. Furthermore it was shown, that the SenseiTM robotic navigation system (Hansen Medical) is effective for ablation of a mitral isthmus line using modified energy settings. Compared to manual ablation, epicardial ablation is less frequently needed to achieve a bidirectional block of the left atrial isthmus line. Thus, in the future, ablation of a left atrial isthmus line could be optimized using the SenseiTM robotic navigation system. In addition, it was shown in the present work, that the long-term effectiveness of the SenseiTM robotic navigation system for the treatment of atrial fibrillation was comparable to manual ablation with a comparable rate of complications. Therefore, this technology is a promising approach for future optimization of atrial fibrillation ablation. The results of the randomized "Man and Machine" study will provide further information about the future opportunities of robotic navigation (98). Rotor mapping is a novel promising technology in the context of atrial fibrillation ablation. So far, no reproducible intracardiac electrogram has been described to identify the rotor regions with conventional catheters in the left atrium. Despite initial convincing long-term data, the rotor technology is not yet conclusively evaluated and needs further studies (65). Other systems for rotor analysis as the non-invasive body surface- mapping are currently under evaluation and might further contribute to optimization of rotor ablation (99). Furthermore, it was shown that the long- term effectiveness of atrial fibrillation ablation in patients with reduced left ventricular systolic function is important, in particular to improve the left ventricular ejection fraction in these patients. The currently still recruiting AMICA study and CASTLE-AF Study (Clinical trials.org) will show in which extent catheter ablation might improve left ventricular function as compared to antiarrhythmic drug therapy.

Understanding the effects of root-associated microbes in explaining plant community patterns represents a challenge in community ecology. Although typically overlooked, several lines of evidence point out that nonmycorrhizal, root endophytic fungi in the Ascomycota may have the potential to drive changes in plant community ecology given their ubiquitous presence, wide host ranges, and plant species-specific fitness effects. Thus, we experimentally manipulated the presence of root endophytic fungal species in microcosms and measured its effects on plant communities. Specifically, we tested whether (1) three different root endophyte species can modify plant community structure; (2) those changes can also modified the way plant respond to different soil types; and (3) the effects are modified when all the fungi are present. As a model system, we used plant and fungal species that naturally co-occur in a temperate grassland. Further, the soil types used in our experiment reflected a strong gradient in soil texture that has been shown to drive changes in plant and fungal community structure in the field. Results showed that each plant species responded differently to infection, resulting in distinct patterns of plant community structure depending on the identity of the fungus present. Those effects depended on the soil type. For example, large positive effects due to presence of the fungi were able to compensate for less nutrients levels in one soil type. Further, host responses when all three fungi were present were different from the ones observed in single fungal inoculations, suggesting that endophyte–endophyte interactions may be important in structuring plant communities. Overall, these results indicate that plant responses to changes in the species identity of nonmycorrhizal fungal community species and their interactions can modify plant community structure.

Sustainability in Agriculture In order to meet future needs of a growing human population and to achieve food security in the context of climate change, food production will likely need to increase—among other measures—while at the same time minimizing negative environmental impact (Foley et al., 2011). Sustainable intensification of agriculture (Garnett et al., 2013; Pretty and Bharucha, 2014; Andres and Bhullar, 2016; Gunton et al., 2016), sometimes also called ecological intensification, is likely to include key aspects of conservation agriculture (e.g., Hobbs et al., 2008; Giller et al., 2015). Pillars of conservation agriculture (FAO, 2015) are no-till practices (Pittelkow et al., 2015), continuous crop cover (by various means, for example cover crops) and diversification practices (multi-cropping and crop rotations; Ponisio et al., 2015).

Meet two famous researchers from the early days of biodiversity research: Charles Darwin and Alexander von Humboldt. Darwin developed a powerful theory, using a limited amount of data by modern standards. Humboldt, in contrast, compiled a “Cosmos” of data without developing a major theory, although some of Humboldt's observations on latitudinal biodiversity gradients (von Humboldt, 1808) were later used to develop theory. This tension between data and theory still persists today and is perhaps becoming more acute.