1. Stimuli Reduce the Dimensionality of Cortical Activity
- Author
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Giancarlo La Camera, Alfredo Fontanini, and Luca Mazzucato
- Subjects
0301 basic medicine ,Cognitive Neuroscience ,Neuroscience (miscellaneous) ,Stimulus (physiology) ,dimensionality ,Upper and lower bounds ,lcsh:RC321-571 ,gustatory cortex ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,0302 clinical medicine ,Developmental Neuroscience ,medicine ,Sensory cortex ,Growth rate ,Statistical physics ,lcsh:Neurosciences. Biological psychiatry. Neuropsychiatry ,Scaling ,030304 developmental biology ,Original Research ,Mathematics ,Network model ,0303 health sciences ,Quantitative Biology::Neurons and Cognition ,hidden markov models ,ongoing activity ,Linear subspace ,spiking network model ,030104 developmental biology ,medicine.anatomical_structure ,Quantitative Biology - Neurons and Cognition ,FOS: Biological sciences ,mean field theory ,Neurons and Cognition (q-bio.NC) ,metastable dynamics ,030217 neurology & neurosurgery ,Neuroscience ,Curse of dimensionality - Abstract
The activity of ensembles of simultaneously recorded neurons can be represented as a set of points in the space of firing rates. Even though the dimension of this space is equal to the ensemble size, neural activity can be effectively localized on smaller subspaces. The dimensionality of the neural space is an important determinant of the computational tasks supported by the neural activity. Here, we investigate the dimensionality of neural ensembles from the sensory cortex of alert rats during period of ongoing (inter-trial) and stimulus-evoked activity. We find that dimensionality grows linearly with ensemble size, and grows significantly faster during ongoing activity compared to evoked activity. We explain these results using a spiking network model based on a clustered architecture. The model captures the difference in growth rate between ongoing and evoked activity and predicts a characteristic scaling with ensemble size that could be tested in high-density multi-electrode recordings. Moreover, the model predicts the existence of an upper bound on dimensionality. This upper bound is inversely proportional to the amount of pair-wise correlations and, compared to a homogeneous network without clusters, it is larger by a factor equal to the number of clusters. The empirical estimation of such bounds depends on the number and duration of trials. Together, these results provide a framework to analyze neural dimensionality in alert animals, its behavior under stimulus presentation, and its theoretical dependence on ensemble size, number of clusters, and pair-wise correlations in spiking network models., Comment: 30 pages, 8 figures; v2 in press, 9 figures, major improvements, including comparison to shuffled datasets, analytical derivation of estimation bias; v3, fixed typo in Fig. 8A
- Published
- 2016
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