1. Regulatory encoding of quantitative variation in spatial activity of a Drosophila enhancer
- Author
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Nicolas Gompel, Yingfei Wang, Elena Osipova, Eamonn Murphy, Remo Rohs, David Bunk, Liucong Ling, Bettina Mühling, Deepak Dharmadhikari, David Hörl, Yann Le Poul, Stephan Preibisch, Heinrich Leonhardt, Hartmann Harz, Benjamin Prud'homme, Yaqun Xin, Rita Jaenichen, Mariam Museridze, Institut de Biologie du Développement de Marseille (IBDM), and Aix Marseille Université (AMU)-Collège de France (CdF (institution))-Centre National de la Recherche Scientifique (CNRS)
- Subjects
animal structures ,[SDV]Life Sciences [q-bio] ,Repressor ,Computational biology ,Quantitative variation ,ENCODE ,03 medical and health sciences ,0302 clinical medicine ,Gene expression ,Genetics ,Animals ,Drosophila Proteins ,Wings, Animal ,Enhancer ,Drosophila ,Gene ,Research Articles ,ComputingMilieux_MISCELLANEOUS ,030304 developmental biology ,0303 health sciences ,Reporter gene ,Multidisciplinary ,biology ,fungi ,SciAdv r-articles ,Gene Expression Regulation, Developmental ,biology.organism_classification ,[SDV.GEN.GA]Life Sciences [q-bio]/Genetics/Animal genetics ,Enhancer Elements, Genetic ,Function and Dysfunction of the Nervous System ,030217 neurology & neurosurgery ,Research Article ,Developmental Biology ,Transcription Factors - Abstract
A high density of regulatory information encodes a quantitative spatial pattern in a Drosophila transcriptional enhancer., Developmental enhancers control the expression of genes prefiguring morphological patterns. The activity of an enhancer varies among cells of a tissue, but collectively, expression levels in individual cells constitute a spatial pattern of gene expression. How the spatial and quantitative regulatory information is encoded in an enhancer sequence is elusive. To link spatial pattern and activity levels of an enhancer, we used systematic mutations of the yellow spot enhancer, active in developing Drosophila wings, and tested their effect in a reporter assay. Moreover, we developed an analytic framework based on the comprehensive quantification of spatial reporter activity. We show that the quantitative enhancer activity results from densely packed regulatory information along the sequence, and that a complex interplay between activators and multiple tiers of repressors carves the spatial pattern. Our results shed light on how an enhancer reads and integrates trans-regulatory landscape information to encode a spatial quantitative pattern.
- Published
- 2020
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