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A frame deformation estimation algorithm is investigated for the purpose of real-time control and health monitoring of flexible lightweight aerospace structures. The inverse finite element method (iFEM) for beam deformation estimation was recently proposed by Gherlone and his collaborators. The methodology uses a least squares principle involving section strains of Timoshenko theory for stretching, torsion, bending, and transverse shearing. The proposed methodology is based on stain-displacement relations only, without invoking force equilibrium. Thus, the displacement fields can be reconstructed without the knowledge of structural mode shapes, material properties, and applied loading. In this paper, the number of the locations where the section strains are evaluated in the iFEM is discussed firstly, and the algorithm is subsequently investigated through a simple supplied beam and an experimental aluminum wing-like frame model in the loading case of end-node force. The estimation results from the iFEM are compared with reference displacements from optical measurement and computational analysis, and the accuracy of the algorithm estimation is quantified by the root-mean-square error and percentage difference error.