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Rectangle has been recognized as an essential motif in a large number of real-world networks. Counting rectangles in a network plays an important role in network analysis. This paper comprehensively studies the rectangle counting problem on large networks. We propose a novel counting paradigm called the wedge-centric counting, where a wedge is a simple path consisting of three vertices. Unlike the traditional edge-centric counting, the wedge-centric counting uses wedges instead of edges as building blocks of rectangles. The main advantage of the wedge-centric counting is that it does not need to access two-hop neighbors. Based on this paradigm, we develop a collection of rectangle counting algorithms, including an in-memory algorithm with lower time complexity, an external-memory algorithm with the optimal I/O complexity, and two randomized algorithms with provable error bounds. The experimental results on a variety of real networks verify the effectiveness and the efficiency of the proposed wedge-centric rectangle counting algorithms.

Mining dense subgraphs on multi-layer graphs is an interesting problem, which has witnessed lots of applications in practice. To overcome the limitations of the quasi-clique-based approach, we propose d-coherent core (d-CC), a new notion of dense subgraph on multi-layer graphs, which has several elegant properties. We formalize the diversified coherent core search (DCCS) problem, which finds k d-CCs that can cover the largest number of vertices. We propose a greedy algorithm with an approximation ratio of 1 - 1/e and two search algorithms with an approximation ratio of 1/4. The experiments verify that the search algorithms are faster than the greedy algorithm and produce comparably good results as the greedy algorithm in practice. As opposed to the quasi-clique-based approach, our DCCS algorithms can fast detect larger dense subgraphs that cover most of the quasi-clique-based results., Comment: Full Version, 17 Pages

This paper studies a novel approach to processing massive uncertain graph data. In this approach, we propose a new framework to simultaneously process a query on a set of randomly sampled possible worlds of an uncertain graph. Based on this framework, we develop a series of algorithms to analyze massive uncertain graphs, including breadth-first search, shortest distance queries, triangle counting, and core decomposition. We implement this approach based on GraphLab, one of the stateof-the-art graph processing frameworks. By sharing fine-grained internal processing steps on common substructures of sampled possible worlds, the new approach achieves tens to hundreds of times speedup in execution time on a cluster of 20 servers.

SimRank is a similarity measure between vertices in a graph, which has become a fundamental technique in graph analytics. Recently, many algorithms have been proposed for efficient evaluation of SimRank similarities. However, the existing SimRank computation algorithms either overlook uncertainty in graph structures or is based on an unreasonable assumption (Du et al). In this paper, we study SimRank similarities on uncertain graphs based on the possible world model of uncertain graphs. Following the random-walk-based formulation of SimRank on deterministic graphs and the possible worlds model of uncertain graphs, we define random walks on uncertain graphs for the first time and show that our definition of random walks satisfies Markov's property. We formulate the SimRank measure based on random walks on uncertain graphs. We discover a critical difference between random walks on uncertain graphs and random walks on deterministic graphs, which makes all existing SimRank computation algorithms on deterministic graphs inapplicable to uncertain graphs. To efficiently compute SimRank similarities, we propose three algorithms, namely the baseline algorithm with high accuracy, the sampling algorithm with high efficiency, and the two-phase algorithm with comparable efficiency as the sampling algorithm and about an order of magnitude smaller relative error than the sampling algorithm. The extensive experiments and case studies verify the effectiveness of our SimRank measure and the efficiency of our SimRank computation algorithms., 14 pages, under review by ICDE'16

Uncertain graphs have been widely used to represent graph data with inherent uncertainty in structures. Reliability search is a fundamental problem in uncertain graph analytics. This paper studies a new problem, the top-k reliability search problem on uncertain graphs, that is, finding k vertices v with the highest reliabilities of connections from a source vertex s to v. Note that the existing algorithm for the threshold-based reliability search problem is inefficient for the top-k reliability search problem. We propose a new algorithm to efficiently solve the top-k reliability search problem. The algorithm adopts two important techniques, namely the BFS sharing technique and the offline sampling technique. The BFS sharing technique exploits overlaps among different sampled possible worlds of the input uncertain graph and performs a single BFS on all possible worlds simultaneously. The offline sampling technique samples possible worlds offline and stored them using a compact structure. The algorithm also takes advantages of bit vectors and bitwise operations to improve efficiency. Moreover, we generalize the top-k reliability search problem to the multi-source case and show that the multi-source case of the problem can be equivalently converted to the single-source case of the problem. Extensive experiments carried out on both real and synthetic datasets verify that the optimized algorithm outperforms the baselines by 1 -- 2 orders of magnitude in execution time while achieving comparable accuracy. Meanwhile, the optimized algorithm exhibits linear scalability with respect to the size of the input uncertain graph.

Structural-context similarities between vertices in graphs, such as the Jaccard similarity, the Dice similarity, and the cosine similarity, play important roles in a number of graph data analysis techniques. However, uncertainty is inherent in massive graph data, and therefore the classical definitions of structural-context similarities on exact graphs don't make sense on uncertain graphs. In this paper, we propose a generic definition of structural-context similarity for uncertain graphs. Since it is computationally prohibitive to compute the similarity between two vertices of an uncertain graph directly by its definition, we investigate two efficient approaches to computing similarities, namely the polynomial-time exact algorithms and the linear-time approximation algorithms. The experimental results on real uncertain graphs verify the effectiveness of the proposed structural-context similarities as well as the accuracy and efficiency of the proposed evaluation algorithms.

Existing studies on graph mining focus on exact graphs that are precise and complete. However, graph data tends to be uncertain in practice due to noise, incompleteness and inaccuracy. This paper investigates the problem of finding top-k maximal cliques in an uncertain graph. A new model of uncertain graphs is presented, and an intuitive measure is introduced to evaluate the significance of vertex sets. An optimized branch-and-bound algorithm is developed to find top-k maximal cliques, which adopts efficient pruning rules, a new searching strategy and effective preprocessing methods. The extensive experimental results show that the proposed algorithm is very efficient on real uncertain graphs, and the top-k maximal cliques are very useful for real applications, e.g. protein complex prediction.