1. The substrate specificity of the human ADP/ATP carrier AAC1
- Author
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Chris Chipot, François Dehez, Eva-Maria Krammer, John Mifsud, Eva Pebay-Peyroula, Edmund R.S. Kunji, Stéphanie Ravaud, Thomas, Frank, Institut de biologie structurale (IBS - UMR 5075 ), Université Grenoble Alpes [2016-2019] (UGA [2016-2019])-Institut de Recherche Interdisciplinaire de Grenoble (IRIG), Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Centre National de la Recherche Scientifique (CNRS), Structure et Réactivité des Systèmes Moléculaires Complexes (SRSMC), Institut de Chimie du CNRS (INC)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS), MRC Mitochondrial Biology Unit, University of Cambridge [UK] (CAM), Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes [2016-2019] (UGA [2016-2019])-Institut de Recherche Interdisciplinaire de Grenoble (IRIG), and Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)
- Subjects
Arylamine N-Acetyltransferase ,ATPase ,MESH: Adenine Nucleotides ,Substrate Specificity ,Adenosine Triphosphate ,MESH: Adenosine Triphosphate ,MESH: Molecular Dynamics Simulation ,0303 health sciences ,[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM] ,ATP synthase ,biology ,Adenine Nucleotides ,MESH: Escherichia coli ,030302 biochemistry & molecular biology ,Mitochondria ,Adenosine Diphosphate ,Isoenzymes ,Lactococcus lactis ,Protein Transport ,Biochemistry ,MESH: Isoenzymes ,ATP–ADP translocase ,MESH: Mitochondrial ADP, ATP Translocases ,ATP synthase alpha/beta subunits ,MESH: Protein Transport ,Guanine ,MESH: Mitochondria ,[SDV.BBM.BS] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM] ,MESH: Biological Transport ,Adenylate kinase ,Photophosphorylation ,Molecular Dynamics Simulation ,03 medical and health sciences ,Escherichia coli ,Humans ,Molecular Biology ,030304 developmental biology ,MESH: Guanine ,Binding Sites ,MESH: Humans ,MESH: Adenosine Diphosphate ,Chemiosmosis ,Cell Membrane ,Biological Transport ,Cell Biology ,Mitochondrial carrier ,MESH: Arylamine N-Acetyltransferase ,MESH: Binding Sites ,MESH: Lactococcus lactis ,biology.protein ,MESH: Substrate Specificity ,Mitochondrial ADP, ATP Translocases ,MESH: Cell Membrane - Abstract
International audience; The mitochondrial ADP/ATP carrier imports ADP from the cytosol into the mitochondrial matrix for its conversion to ATP by ATP synthase and exports ATP out of the mitochondrion to replenish the eukaryotic cell with chemical energy. Here the substrate specificity of the human mitochondrial ADP/ATP carrier AAC1 was determined by two different approaches. In the first the protein was functionally expressed in Escherichia coli membranes as a fusion protein with maltose binding protein and the effect of excess of unlabeled compounds on the uptake of [(32)P]-ATP was measured. In the second approach the protein was expressed in the cytoplasmic membrane of Lactococcus lactis. The uptake of [(14)C]-ADP in whole cells was measured in the presence of excess of unlabeled compounds and in fused membrane vesicles loaded with unlabeled compounds to demonstrate their transport. A large number of nucleotides were tested, but only ADP and ATP are suitable substrates for human AAC1, demonstrating a very narrow specificity. Next we tried to understand the molecular basis of this specificity by carrying out molecular-dynamics simulations with selected nucleotides, which were placed at the entrance of the central cavity. The binding of the phosphate groups of guanine and adenine nucleotides is similar, yet there is a low probability for the base moiety to be bound, likely to be rooted in the greater polarity of guanine compared to adenine. AMP is unlikely to engage fully with all contact points of the substrate binding site, suggesting that it cannot trigger translocation.
- Published
- 2012
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