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Low density parity check (LDPC) code is a kind of linear block code with excellent performance which is proposed by Dr. Gallager. It overcomes the shortcomings of other error correcting codes and it is the nearest channel code from Shannon limit at the present discover. The decoding algorithms of LDPC code can reduce the decoding delay by the parallel decoding structure, so this has caused great concern in many fields. In recent years more and more scholars begin to study LDPC code, this makes the coding and decoding algorithms of LDPC code improved continuously. LDPC code has been widely used in many fields such as optical fiber communication, digital watermarking, underwater communication and deep space communication because of its excellent performance. Non-binary LDPC code has better performance compared with binary LDPC code. In this paper, FFT-BP decoding algorithm of non-binary LDPC code is studied, and on this basis, we proposed an improved FFT-BP algorithm. The improved decoding algorithm can effectively reduce the average iteration number. Finally, we achieved encode and decode algorithm of non-binary LDPC code with FPGA. [ABSTRACT FROM AUTHOR]