1. CREBBP and WDR 24 Identified as Candidate Genes for Quantitative Variation in Red-Brown Plumage Colouration in the Chicken
- Author
-
N. Huq, Per Jensen, Jesper Fogelholm, Rie Henriksen, Andrey Höglund, Dominic Wright, Martin Johnsson, and Reiner Lenz
- Subjects
Male ,0106 biological sciences ,0301 basic medicine ,Candidate gene ,WD40 Repeats ,Genetics and Breeding ,genetic structures ,Quantitative Trait Loci ,lcsh:Medicine ,Quantitative trait locus ,Biology ,Quantitative variation ,Quantitative trait ,010603 evolutionary biology ,01 natural sciences ,Article ,Evolutionary genetics ,03 medical and health sciences ,Genetics (medical genetics to be 30107 and agricultural genetics to be 40402) ,medicine ,Genetics ,Animals ,Wings, Animal ,Genetik ,lcsh:Science ,Gene ,Crosses, Genetic ,Genetic Association Studies ,Multidisciplinary ,Pigmentation ,lcsh:R ,Chromosome Mapping ,Feathers ,medicine.disease ,CREB-Binding Protein ,Phenotype ,030104 developmental biology ,Evolutionary biology ,Plumage ,Trait ,Albinism ,lcsh:Q ,Female ,Gene expression ,Lod Score ,Chickens - Abstract
Plumage colouration in birds is important for a plethora of reasons, ranging from camouflage, sexual signalling, and species recognition. The genes underlying colour variation have been vital in understanding how genes can affect a phenotype. Multiple genes have been identified that affect plumage variation, but research has principally focused on major-effect genes (such as those causing albinism, barring, and the like), rather than the smaller effect modifier loci that more subtly influence colour. By utilising a domestic × wild advanced intercross with a combination of classical QTL mapping of red colouration as a quantitative trait and a targeted genetical genomics approach, we have identified five separate candidate genes (CREBBP, WDR24, ARL8A, PHLDA3, LAD1) that putatively influence quantitative variation in red-brown colouration in chickens. By treating colour as a quantitative rather than qualitative trait, we have identified both QTL and genes of small effect. Such small effect loci are potentially far more prevalent in wild populations, and can therefore potentially be highly relevant to colour evolution. Funding agencies: Carl Tryggers Stiftelse; Swedish Research CouncilSwedish Research Council; Swedish Research Council for Environment, Agricultural Sciences and Spatial Planning (FORMAS)Swedish Research Council Formas; European Research CouncilEuropean Research Council (ER
- Published
- 2020
- Full Text
- View/download PDF