6 results on '"Marina Barba"'
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2. Historical Perspective, Development and Applications of Next-Generation Sequencing in Plant Virology
- Author
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Marina Barba, Henryk Czosnek, and Ahmed Hadidi
- Subjects
next-generation (deep) sequencing ,NGS ,novel virus/viroid discovery ,metagenomics ,virome ,transcriptome ,DNA sequencing ,RNA sequencing (RNA-seq.) ,Microbiology ,QR1-502 - Abstract
Next-generation high throughput sequencing technologies became available at the onset of the 21st century. They provide a highly efficient, rapid, and low cost DNA sequencing platform beyond the reach of the standard and traditional DNA sequencing technologies developed in the late 1970s. They are continually improved to become faster, more efficient and cheaper. They have been used in many fields of biology since 2004. In 2009, next-generation sequencing (NGS) technologies began to be applied to several areas of plant virology including virus/viroid genome sequencing, discovery and detection, ecology and epidemiology, replication and transcription. Identification and characterization of known and unknown viruses and/or viroids in infected plants are currently among the most successful applications of these technologies. It is expected that NGS will play very significant roles in many research and non-research areas of plant virology.
- Published
- 2014
- Full Text
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3. Role of eIF5A in Mitochondrial Function
- Author
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Marina Barba-Aliaga and Paula Alepuz
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QH301-705.5 ,Organic Chemistry ,RNA-Binding Proteins ,translation ,General Medicine ,OXPHOS ,Catalysis ,Computer Science Applications ,Inorganic Chemistry ,mitochondria ,Chemistry ,Peptide Initiation Factors ,mitochondrial respiration ,spermidine ,Humans ,eIF5A ,Physical and Theoretical Chemistry ,Biology (General) ,Energy Metabolism ,Peptides ,Molecular Biology ,Ribosomes ,QD1-999 ,Spectroscopy - Abstract
The eukaryotic translation initiation factor 5A (eIF5A) is an evolutionarily conserved protein that binds ribosomes to facilitate the translation of peptide motifs with consecutive prolines or combinations of prolines with glycine and charged amino acids. It has also been linked to other molecular functions and cellular processes, such as nuclear mRNA export and mRNA decay, proliferation, differentiation, autophagy, and apoptosis. The growing interest in eIF5A relates to its association with the pathogenesis of several diseases, including cancer, viral infection, and diabetes. It has also been proposed as an anti-aging factor: its levels decay in aged cells, whereas increasing levels of active eIF5A result in the rejuvenation of the immune and vascular systems and improved brain cognition. Recent data have linked the role of eIF5A in some pathologies with its function in maintaining healthy mitochondria. The eukaryotic translation initiation factor 5A is upregulated under respiratory metabolism and its deficiency reduces oxygen consumption, ATP production, and the levels of several mitochondrial metabolic enzymes, as well as altering mitochondria dynamics. However, although all the accumulated data strongly link eIF5A to mitochondrial function, the precise molecular role and mechanisms involved are still unknown. In this review, we discuss the findings linking eIF5A and mitochondria, speculate about its role in regulating mitochondrial homeostasis, and highlight its potential as a target in diseases related to energy metabolism.
- Published
- 2022
4. Yeast Translation Elongation Factor eIF5A Expression Is Regulated by Nutrient Availability through Different Signalling Pathways
- Author
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Carlos Villarroel-Vicente, Alba Corman, Marina Barba-Aliaga, María Teresa Martínez-Pastor, Paula Alepuz, and Alice Stanciu
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Mitochondrion ,Biotecnologia ,lcsh:Chemistry ,Peptide Initiation Factors ,Gene Expression Regulation, Fungal ,mitochondrial respiration ,Gene expression ,Expressió genètica ,Hap1 ,Protein Isoforms ,heme ,lcsh:QH301-705.5 ,Spectroscopy ,Chemistry ,RNA-Binding Proteins ,Translation (biology) ,Iron Deficiencies ,General Medicine ,TOR ,Aerobiosis ,Up-Regulation ,Computer Science Applications ,Cell biology ,Snf1 ,EIF5A ,Signal Transduction ,Gene isoform ,Saccharomyces cerevisiae Proteins ,Iron ,Citric Acid Cycle ,Down-Regulation ,Saccharomyces cerevisiae ,Mechanistic Target of Rapamycin Complex 1 ,Models, Biological ,Article ,Catalysis ,Inorganic Chemistry ,eIF5A ,Physical and Theoretical Chemistry ,Molecular Biology ,Transcription factor ,Gene ,Lysine ,Organic Chemistry ,Nutrients ,Metabolism ,Carbon ,Metabolic Flux Analysis ,Glucose ,lcsh:Biology (General) ,lcsh:QD1-999 ,Fermentation ,gene expression - Abstract
Translation elongation factor eIF5A binds to ribosomes to promote peptide bonds between problematic amino acids for the reaction like prolines. eIF5A is highly conserved and essential in eukaryotes, which usually contain two similar but differentially expressed paralogue genes. The human eIF5A-1 isoform is abundant and implicated in some cancer types, the eIF5A-2 isoform is absent in most cells but becomes overexpressed in many metastatic cancers. Several reports have connected eIF5A and mitochondria because it co-purifies with the organelle or its inhibition reduces respiration and mitochondrial enzyme levels. However, the mechanisms of eIF5A mitochondrial function, and whether eIF5A expression is regulated by the mitochondrial metabolism, are unknown. We analysed the expression of yeast eIF5A isoforms Tif51A and Tif51B under several metabolic conditions and in mutants. The depletion of Tif51A, but not Tif51B, compromised yeast growth under respiration and reduced oxygen consumption. Tif51A expression followed dual positive regulation: by high glucose through TORC1 signalling, like other translation factors, to promote growth and by low glucose or non-fermentative carbon sources through Snf1 and heme-dependent transcription factor Hap1 to promote respiration. Upon iron depletion, Tif51A was down-regulated and Tif51B up-regulated. Both were Hap1-dependent. Our results demonstrate eIF5A expression regulation by cellular metabolic status.
- Published
- 2021
5. Functional and Cosmetic Outcome after Reconstruction of Isolated, Unilateral Orbital Floor Fractures (Blow-Out Fractures) with and without the Support of 3D-Printed Orbital Anatomical Models
- Author
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Marina Barba, Guido R. Sigron, Britt-Isabelle Berg, Frédérique Chammartin, Bilal Msallem, and Florian M. Thieringer
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Orthodontics ,Diplopia ,Sensory disturbance ,3d printed ,Titanium implant ,business.industry ,Enophthalmos ,patient-specific implant ,orbital reconstruction ,General Medicine ,Article ,eye diseases ,functional outcome ,medicine.anatomical_structure ,Blow out fractures ,blow-out fracture ,Medicine ,medicine.symptom ,orbital fracture ,business ,Orbital Fracture ,Orbit (anatomy) ,printed anatomical model - Abstract
The present study aimed to analyze if a preformed “hybrid” patient-specific orbital mesh provides a more accurate reconstruction of the orbital floor and a better functional outcome than a standardized, intraoperatively adapted titanium implant. Thirty patients who had undergone surgical reconstruction for isolated, unilateral orbital floor fractures between May 2016 and November 2018 were included in this study. Of these patients, 13 were treated conventionally by intraoperative adjustment of a standardized titanium mesh based on assessing the fracture’s shape and extent. For the other 17 patients, an individual three-dimensional (3D) anatomical model of the orbit was fabricated with an in-house 3D-printer. This model was used as a template to create a so-called “hybrid” patient-specific titanium implant by preforming the titanium mesh before surgery. The functional and cosmetic outcome in terms of diplopia, enophthalmos, ocular motility, and sensory disturbance trended better when “hybrid” patient-specific titanium meshes were used but with statistically non-significant differences. The 3D-printed anatomical models mirroring the unaffected orbit did not delay the surgery’s timepoint. Nonetheless, it significantly reduced the surgery duration compared to the traditional method (58.9 (SD: 20.1) min versus 94.8 (SD: 33.0) min, p-value = 0.003). This study shows that using 3D-printed anatomical models as a supporting tool allows precise and less time-consuming orbital reconstructions with clinical benefits.
- Published
- 2021
6. Investigation of the Possibilities to Improve Hydrodynamic Performances of Micro-Hydrokinetic Turbines
- Author
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Marina Barbarić and Zvonimir Guzović
- Subjects
hydropower ,hydrokinetic turbine ,shrouded turbine ,diffuser augmented turbine ,optimization based design ,power augmentation ,Technology - Abstract
Horizontal axis turbines are commonly used for harnessing renewable hydrokinetic energy, contained in marine and river currents. In order to encourage the expansion of electricity generation using micro-hydrokinetic turbines, several design improvements are investigated. Firstly, optimization-based design of rotor blade is used to get as close as possible to the efficiency limit of 59.3% (known as Betz limit), that counts for bare turbine rotors, placed in the free flow. Additional diffuser elements are further added to examine the potential to overcome the theoretical efficiency limit by accelerating water at the axial direction. Various diffuser geometrical configurations are investigated using the computational fluid dynamics (CFD) to obtain insight into hydrodynamics of augmented micro-hydrokinetic turbines. Moreover, the turbines are compared from the energy conversion efficiency point of view. The highest maximum power coefficient increase of 81% is obtained with brimmed (flanged) diffuser. Diffusers with foil-shaped cross-sections have also been analyzed but power augmentation is not significantly greater than in the case of simple cross-section designs of the same dimensions. The power coefficients’ comparison indicate that considerable power augmentation is achievable using brimmed diffuser with higher value of length-to-diameter ratio. However, the impact of diffuser length increase on the power coefficient enhancement becomes weaker as the length-to-diameter ratio reaches a value of 1.
- Published
- 2020
- Full Text
- View/download PDF
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