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The research aims were to construct an air-breathing paper-based microfluidic fuel cell (paper-based μ FC) and to evaluated it with different soft drinks to provide energy for their prospective use in portable devices as an emergency power source. First, in a half-cell configuration, cyclic voltammetry showed that glucose, maltose, and fructose had specific oxidation zones in the presence of platinum-ruthenium on carbon (PtRu/C) when they were individual. Still, when they were mixed, glucose was observed to be oxidized to a greater extent than fructose and maltose. After, when a paper-based μ FC was constructed, PtRu/C and platinum on carbon (Pt/C) were used as anode and cathode, the performance of this μ FC was mostly influenced by the concentration of glucose present in each soft drink, obtaining maximum power densities at room temperature of 0.061, 0.063, 0.060, and 0.073 mW cm − 2 for Coca Cola ® , Pepsi ® , Dr. Pepper ® , and 7up ® , respectively. Interestingly, when the soft drinks were cooled, the performance was increased up to 85%. Furthermore, a four-cell stack μ FC was constructed to demonstrate its usefulness as a possible power supply, obtaining a power density of 0.4 mW cm − 2 , using Coca Cola ® as fuel and air as oxidant. Together, the results of the present study indicate an alternative application of an μ FC using soft drinks as a backup source of energy in emergencies.