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The aim of this study was to determine the differences in golf swing execution in terms of the parameters of the pelvis and thorax movement between the sexes in junior golfers and their relation to the golf club velocity. Elite female and male players (age: 15.4 ± 1.0 and 15.8 ± 1.7 years, respectively) performed 10 golf swings with a driver under laboratory conditions. Pelvis and thorax movement parameters and golf club velocities were measured using a three-dimensional motion capture system. Statistical parametric mapping analysis of pelvis–thorax coupling revealed a significant difference (p < 0.05) between boys and girls during backswing. Analysis of variance showed a significant effect of sex on the parameters of maximal pelvic rotation (F = 6.28, p = 0.02), X-factor (F = 5.41, p = 0.03), and golf club velocity (F = 31.98, p < 0.01). No significant relationship was found between pelvis and thorax movement parameters and golf club velocity in the girls. We found a significant negative relationship between the parameters of maximal thorax rotation and golf club velocity (r = −0.941, p < 0.01) and between X-Factor and golf club velocity (r = −0.847, p < 0.05) in the boys. We suggest that these negative relationships in males were caused by the influence of hormones during their maturation and biological development, where there is decreased flexibility (lower shoulders rotation and X-factor) and growth of muscle strength (higher club head velocity).