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Aquaponics is a plant and fish co-cultivation system with high sustainability, yet sub-optimal concentrations of Fe and K often compromise crop yields. We cultivated the Mediterranean wild edible Cichorium spinosum L. (Greek name: stamnagathi) in an aquaponics setup following a minimal supplementation approach that focused on Fe and K. Stamnagathi and tilapia fish were co-cultivated under (i) solely Fe, (ii) Fe+K input and (iii) no-input Control treatments. We aimed to evaluate the feasibility of aquaponics for stamnagathi cultivation, identify the system’s bottlenecks, and propose optimization measures. Several plant’s growth and functional parameters were monitored throughout the 35-day experimental period, notably instantaneous gas exchange and photosynthetic capacity via light response curves, state and efficiency of the photosynthetic machinery, pigment content, and yield and morphometric assessments. Fish growth characteristics and survival rates remained unaffected. Fe deficiency was crucial in shaping the responses of Control stamnagathi, which showed inferior performance in terms of photochemistry, chlorophylls content, light use efficiency and, subsequently, photosynthetic activity. Fe and Fe+K-treated plants exhibited similarly high performance in all studied parameters and achieved 4.5- and 4-fold increased yields, respectively, compared to Control. The results demonstrate that aquaponics is an advantageous cropping system for stamnagathi and solely Fe supplementation is adequate to promote excellent performance and yield of this oligotrophic species.

Aquaponics is a promising cultivation technique for combined production of crops and fish, on the condition of tackling certain nutrients deficiencies. The aim of the present study was to examine the limitations imposed by the system on spinach (Spinacia oleracea) growth and functional performance and to identify the minimum nutrient supplementation for their optimization. Spinach was co-cultivated with red tilapia under three treatments; iron (Fe) and iron with potassium (Fe+K) enrichment was compared with the no-external input control. During a 45-day experiment, the photosynthetic performance, photosynthetic machinery efficiency, total chlorophylls content, and leaf reflectance were monitored, along with leaf nutritional state, antioxidant activity, and growth responses of fish and crops. Control plants showed symptoms of Fe deficiency, extensive chlorosis, stunted growth, and functional impairment already from day 10. The latter consisted of a coordinated down-regulation of photochemistry, carboxylation, and light-use efficiency. Fe-treated plants exhibited similar growth and functional performance with Fe+K-treated plants but outperformed them in chlorophyll content, photosynthetic rates, and photochemical efficiency, mainly due to higher quantum yield of electron transport. Fish growth remained unaffected. Fe-deficiency was identified as the major bottleneck for spinach cultivation in closed-loop aquaponics, and our results demonstrate that only Fe supplementation may sufficiently improve spinach function and yield.

In environmental conditions, plants can be affected by the action of numerous abiotic stressors. These stressors can induce both damage of physiological processes and adaptive changes including signaling-based changes. Development of optical methods of revealing influence of stressors on plants is an important task for plant investigations. The photochemical reflectance index (PRI) based on plant reflectance at 531 nm (measuring wavelength) and 570 nm (reference wavelength) can be effective tool of revealing plant stress changes (mainly, photosynthetic changes); however, its efficiency is strongly varied at different conditions. Earlier, we proposed series of modified PRIs with moderate shifts of the measuring wavelength and showed that these indices can be effective for revealing photosynthetic changes under fluctuations in light intensity. The current work was devoted to the analysis of sensitivity of these modified PRIs to action of drought and short-term heat stress. Investigation of spatially-fixed leaves of pea plants showed that the modified PRI with the shorter measuring wavelength (515 nm) was increased under response of drought and heat; by contrast, the modified PRI with the longer wavelength (555 nm) was decreased under response to these stressors. Changes of investigated indices could be related to parameters of photosynthetic light reactions; however, these relations were stronger for the modified PRI with the 555 nm measuring wavelength. Investigation of canopy of pea (vegetation room) and wheat (vegetation room and open-ground) supported these results. Thus, moderate changes in the measuring wavelengths of PRI can strongly modify the efficiency of their use for the estimation of plant physiological changes (mainly photosynthetic changes) under action of stressors. It is probable that the modified PRI with the 555 nm measuring wavelength (or similar indices) can be an effective tool for revealing photosynthetic changes induced by stressors.

Plants are affected by numerous environmental factors that influence their physiological processes and productivity. Early revealing of their action based on measuring spectra of reflected light and calculating reflectance indices is an important stage in the protection of agricultural plants. Photochemical reflectance index (PRI) is a widely used parameter related to photosynthetic changes in plants under action of stressors. We developed a new system for proximal imaging of PRI based on using short pulses of measuring light detected simultaneously in green (530 nm) and yellow (570 nm) spectral bands. The system has several advances compared to those reported in literature. Active light illumination and subtraction of the ambient light allow for PRI measurements without periodic calibrations. Short duration of measuring pulses (18 ms) minimizes their influence on plants. Measurements in two spectral bands operated by separate cameras with aligned fields of visualization allow one to exclude mechanically switchable parts like filter wheels thus minimizing acquisition time and increasing durability of the setup. Absolute values of PRI and light-induced changes in PRI (ΔPRI) in pea leaves and changes of these parameters under action of light with different intensities, water shortage, and heating have been investigated using the developed setup. Changes in ΔPRI are shown to be more robust than the changes in the absolute value of PRI which is in a good agreement with our previous studies. Values of PRI and, especially, ΔPRI are strongly linearly related to the energy-dependent component of the non-photochemical quenching and can be potentially used for estimation of this component. Additionally, we demonstrate that the developed system can also measure fast changes in PRI (hundreds of milliseconds and seconds) under leaf illumination by the pulsed green-yellow measuring light. Thus, the developed system of proximal PRI imaging can be used for PRI measurements (including fast changes in PRI) and estimation of stressors-induced photosynthetic changes.

Efficient and accurate methods to monitor crop physiological responses help growers better understand crop physiology and improve crop productivity. In recent years, developments in unmanned aerial vehicles (UAV) and sensor technology have enabled image acquisition at very-high spectral, spatial, and temporal resolutions. However, potential applications and limitations of very-high-resolution (VHR) hyperspectral and thermal UAV imaging for characterization of plant diurnal physiology remain largely unknown, due to issues related to shadow and canopy heterogeneity. In this study, we propose a canopy zone-weighting (CZW) method to leverage the potential of VHR (≤9 cm) hyperspectral and thermal UAV imageries in estimating physiological indicators, such as stomatal conductance (Gs) and steady-state fluorescence (Fs). Diurnal flights and concurrent in-situ measurements were conducted during grapevine growing seasons in 2017 and 2018 in a vineyard in Missouri, USA. We used neural net classifier and the Canny edge detection method to extract pure vine canopy from the hyperspectral and thermal images, respectively. Then, the vine canopy was segmented into three canopy zones (sunlit, nadir, and shaded) using K-means clustering based on the canopy shadow fraction and canopy temperature. Common reflectance-based spectral indices, sun-induced chlorophyll fluorescence (SIF), and simplified canopy water stress index (siCWSI) were computed as image retrievals. Using the coefficient of determination (R2) established between the image retrievals from three canopy zones and the in-situ measurements as a weight factor, weighted image retrievals were calculated and their correlation with in-situ measurements was explored. The results showed that the most frequent and the highest correlations were found for Gs and Fs, with CZW-based Photochemical reflectance index (PRI), SIF, and siCWSI (PRICZW, SIFCZW, and siCWSICZW), respectively. When all flights combined for the given field campaign date, PRICZW, SIFCZW, and siCWSICZW significantly improved the relationship with Gs and Fs. The proposed approach takes full advantage of VHR hyperspectral and thermal UAV imageries, and suggests that the CZW method is simple yet effective in estimating Gs and Fs.

Spectral reflectance-based vegetation indices have sensitive characteristics to crop growth and health conditions. The performance of each vegetation index to a certain condition is different and needs to be interpreted, correspondingly. This study aimed to assess the most suitable vegetation index to identify the crop response against elevated air temperatures, heat stress, and herbicide damage. The spectral reflectance, yield components, and growth parameters such as plant height, leaf area index (LAI), and above-ground dry matter of paddy rice, which was cultivated in a temperature gradient field chamber to simulate global warming conditions, were observed from 2016 to 2018. The relationships between the vegetation indices and the crop parameters were assessed considering stress conditions. The normalized difference vegetation index (NDVI) represented the changes in plant height (R-square = 0.93) and the LAI (R-square = 0.901) before the heading stage. Furthermore, the NDVI and the cumulative growing degree days had a Sigmoid curve and an R-square value of 0.937 under the normal growth case, but it decreased significantly in the herbicide damage case. This characteristic was useful for detecting the damaged crop growth condition. Additionally, to estimate the grain yield of paddy rice, the medium resolution imaging spectrometer (MERIS) terrestrial chlorophyll index was better: R-square = 0.912; root mean square error = 95.69 g/m2. Photochemical reflectance index was sensitive to physiological stress caused by the heatwave, and it decreased in response to extremely high air temperatures. These results will contribute towards determining vegetation indices under stress conditions and how to effectively utilize them.

The availability of light within the tree canopy affects various leaf traits and leaf reflectance. We determined the leaf reflectance variation from 400 nm to 2500 nm among three canopy layers and cardinal directions of three genetically identical cloned silver birches growing at the same common garden site. The variation in the canopy layer was evident in the principal component analysis (PCA), and the influential wavelengths responsible for variation were identified using the variable importance in projection (VIP) based on partial least squares discriminant analysis (PLS-DA). Leaf traits, such as chlorophyll, nitrogen, dry weight, and specific leaf area (SLA), also showed significant variation among the canopy layers. We found a shift in the red edge inflection point (REIP) for the canopy layers. The canopy layers contribute to the variability in the reflectance indices. We conclude that the largest variation was among the canopy layers, whereas the differences among individual trees to the leaf reflectance were relatively small. This implies that within-tree variation due to the canopy layer should be taken into account in the estimation of intraspecific variation in the canopy reflectance.

Hyperspectral remote sensing (RS) provides unique possibilities to monitor peatland vegetation traits and their temporal dynamics at a fine spatial scale. Peatlands provide a vital contribution to ecosystem services by their massive carbon storage and wide heterogeneity. However, monitoring, understanding, and disentangling the diverse vegetation traits from a heterogeneous landscape using complex RS signal is challenging, due to its wide biodiversity and distinctive plant species composition. In this work, we aim to demonstrate, for the first time, the large heterogeneity of peatland vegetation traits using well-established vegetation indices (VIs) and Sun-Induced Fluorescence (SIF) for describing the spatial heterogeneity of the signals which may correspond to spatial diversity of biochemical and structural traits. SIF originates from the initial reactions in photosystems and is emitted at wavelengths between 650–780 nm, with the first peak at around 687 nm and the second peak around 760 nm. We used the first HyPlant airborne data set recorded over a heterogeneous peatland area and its surrounding ecosystems (i.e., forest, grassland) in Poland. We deployed a comparative analysis of SIF and VIs obtained from differently managed and natural vegetation ecosystems, as well as from diverse small-scale peatland plant communities. Furthermore, spatial relationships between SIF and VIs from large-scale vegetation ecosystems to small-scale peatland plant communities were examined. Apart from signal variations, we observed a positive correlation between SIF and greenness-sensitive VIs, whereas a negative correlation between SIF and a VI sensitive to photosynthesis was observed for large-scale vegetation ecosystems. In general, higher values of SIF were associated with higher biomass of vascular plants (associated with higher Leaf Area Index (LAI)). SIF signals, especially SIF760, were strongly associated with the functional diversity of the peatland vegetation. At the peatland area, higher values of SIF760 were associated with plant communities of high perennials, whereas, lower values of SIF760 indicated peatland patches dominated by Sphagnum. In general, SIF760 reflected the productivity gradient on the fen peatland, from Sphagnum-dominated patches with the lowest SIF and fAPAR values indicating lowest productivity to the Carex-dominated patches with the highest SIF and fAPAR values indicating highest productivity.

The photochemical reflectance index (PRI) is a widely used spectral index which can show stress-induced changes in photosynthesis (e.g., increase of the nonphotochemical quenching of chlorophyll fluorescence (NPQ)). The artificial illumination of plants improves the efficiency of estimation of photosynthetic processes on the basis of PRI measurements. However, the simultaneous activity of different light sources with different locations can disturb the measurement of PRI. Using pulses of a green-yellow measuring light can potentially solve this problem. The aim of the present work was to investigate the possibility of using green-yellow light pulses for the investigation of light-induced changes in PRI in higher plants (pea, wheat, and pumpkin) and for the analysis of connection between PRI and the energy-dependent component of NPQ (NPQF). First, we showed that using green-yellow light pulses eliminated shifts of reflected light, which were connected with the application of a red actinic light. Second, analysis of light dependences of NPQF, the absolute value of PRI, and changes in PRI (the difference between the PRI under the actinic light and the initial value of PRI without this light, ΔPRI) showed that the dynamics of the increase of NPQF and the decrease of PRI and ΔPRI were similar. Changes in NPQF and ΔPRI were found to be significant. In contrast, changes in the absolute value of PRI were not significant in most of the variants of the experiments. Third, scatter plots between NPQF and ΔPRI showed similar linear correlations for investigated species; moreover, a total set of experimental points (for pea, wheat, and pumpkin) were also described by the same linear regression. Thus, our results show that (i) pulses of green-yellow measuring light can be used for measurements of PRI, and (ii) ΔPRI is a more effective indicator for the estimation of NPQ than the absolute value of PRI.

Commercially available autonomous photochemical reflectance index (PRI) sensors are a new development in the remote sensing field that offer novel opportunities for a deeper exploration of vegetation physiology dynamics. In this study, we evaluated the reliability of autonomous PRI sensors (SRS-PRI) developed by METER Group Inc. as proxies of light use efficiency (LUE) in an aspen (Populus tremuloides) forest stand. Before comparisons between PRI and LUE measurements were made, the optical SRS-PRI sensor pairs required calibrations to resolve diurnal and seasonal patterns properly. An offline diurnal calibration procedure was shown to account for variable sky conditions and diurnal illumination changes affecting sensor response. Eddy covariance measurements provided seasonal gross primary productivity (GPP) measures as well as apparent canopy quantum yield dynamics (&alpha, ). LUE was derived from the ratio of GPP to absorbed photosynthetically active radiation (APAR). Corrected PRI values were derived after diurnal and midday cross-calibration of the sensor&rsquo, s 532 nm and 570 nm fore-optics, and closely related to both LUE (R2 = 0.62, p &lt, 0.05) and &alpha, (R2 = 0.72, p &lt, 0.05). A LUE model derived from corrected PRI values showed good correlation to measured GPP (R2 = 0.77, p &lt, 0.05), with an accuracy comparable to results obtained from an &alpha, driven LUE model (R2 = 0.79, p &lt, 0.05). The automated PRI sensors proved to be suitable proxies of light use efficiency. The onset of continuous PRI sensors signifies new opportunities for explicitly examining the cause of changing PRI, LUE, and productivity over time and space. As such, this technology represents great value for the flux, remote sensing and modeling community.

Tree species in the boreal forest cycle between periods of active growth and dormancy alter their photosynthetic processes in response to changing environmental conditions. For deciduous species, these changes are readily visible, while evergreen species have subtler foliar changes during seasonal transitions. In this study, we used remotely sensed optical indices to observe seasonal changes in photosynthetic activity, or photosynthetic phenology, of six boreal tree species. We evaluated the normalized difference vegetation index (NDVI), the photochemical reflectance index (PRI), the chlorophyll/carotenoid index (CCI), and steady-state chlorophyll fluorescence (FS) as a measure of solar-induced fluorescence (SIF), and compared these optical metrics to gas exchange to determine their efficacy in detecting seasonal changes in plant photosynthetic activity. The NDVI and PRI exhibited complementary responses. The NDVI paralleled photosynthetic phenology in deciduous species, but not in evergreens. The PRI closely paralleled photosynthetic activity in evergreens, but less so in deciduous species. The CCI and FS tracked photosynthetic phenology in both deciduous and evergreen species. The seasonal patterns of optical metrics and photosynthetic activity revealed subtle differences across and within functional groups. With the CCI and fluorescence becoming available from satellite sensors, they offer new opportunities for assessing photosynthetic phenology, particularly for evergreen species, which have been difficult to assess with previous methods.

Spatio-temporal mismatches between Remote Sensing (RS) and Eddy Covariance (EC) data as well as spatial heterogeneity jeopardize terrestrial Gross Primary Production (GPP) modeling. This article combines: (a) high spatial resolution hyperspectral imagery; (b) EC footprint climatology estimates; and (c) semi-empirical models of increasing complexity to analyze the impact of these factors on GPP estimation. Analyses are carried out in a Mediterranean Tree-Grass Ecosystem (TGE) that combines vegetation with very different physiologies and structure. Half-hourly GPP (GPPhh) were predicted with relative errors ~36%. Results suggest that, at EC footprint scale, the ecosystem signals are quite homogeneous, despite tree and grass mixture. Models fit using EC and RS data with high degree of spatial and temporal match did not significantly improved models performance; in fact, errors were explained by meteorological variables instead. In addition, the performance of the different models was quite similar. This suggests that none of the models accurately represented light use efficiency or the fraction of absorbed photosynthetically active radiation. This is partly due to model formulation; however, results also suggest that the mixture of the different vegetation types might contribute to hamper such modeling, and should be accounted for GPP models in TGE and other heterogeneous ecosystems.

Sun-induced chlorophyll fluorescence (F) is a novel remote sensing parameter providing an estimate of actual photosynthetic rates. A combination of this new observable and Monteith’s light use efficiency (LUE) concept was suggested for an advanced modeling of gross primary productivity (GPP). In this demonstration study, we evaluate the potential of both F and the more commonly used photochemical reflectance index (PRI) to approximate the LUE term in Monteith’s equation and eventually improve the forward modeling of GPP diurnals. Both F and the PRI were derived from ground and airborne based spectrometer measurements over two different crops. We demonstrate that approximating dynamic changes of LUE using F and PRI significantly improves the forward modeling of GPP diurnals. Especially in sugar beet, a changing photosynthetic efficiency during the day was traceable with F and incorporating F in the forward modeling significantly improved the estimation of GPP. Airborne data were projected to produce F and PRI maps for winter wheat and sugar beet fields over the course of one day. We detected a significant variability of both, F and the PRI within one field and particularly between fields. The variability of F and PRI was higher in sugar beet, which also showed a physiological down-regulation of leaf photosynthesis. Our results underline the potential of F to serve as a superior indicator for the actual efficiency of the photosynthetic machinery, which is linked to physiological responses of vegetation.

Understanding plant photosynthesis, or Gross Primary Production (GPP), is a crucial aspect of quantifying the terrestrial carbon cycle. Remote sensing approaches, in particular multi-angular spectroscopy, have proven successful for studying relationships between canopy-reflectance and plant-physiology processes, thus providing a mechanism to scale up. However, many different instrumentation designs exist and few cross-comparisons have been undertaken. This paper discusses the design evolution of the Automated Multiangular SPectro-radiometer for Estimation of Canopy reflectance (AMSPEC) series of instruments. Specifically, we assess the performance of the PP-Systems Unispec-DC and Ocean Optics JAZ-COMBO spectro-radiometers installed on an updated, tower-based AMSPEC-III system. We demonstrate the interoperability of these spectro-radiometers, and the results obtained suggest that JAZ-COMBO can successfully be used to substitute more expensive measurement units for detecting and investigating photosynthesis and canopy spectra. We demonstrate close correlations between JAZ-COMBO and Unispec-DC measured canopy radiance (0.75 ≤ R² ≤ 0.85) and solar irradiance (0.95 ≤ R² ≤ 0.96) over a three month time span. We also demonstrate close agreement between the bi-directional distribution functions obtained from each instrument. We conclude that cost effective alternatives may allow a network of AMSPEC-III systems to simultaneously monitor various vegetation types in different ecosystems. This will allow to scale and improve our understanding of the interactions between vegetation physiology and spectral characteristics, calibrate broad-scale observations to stand-level measurements, and ultimately lead to improved understanding of changing vegetation spectral features from satellite.

Photosynthetic light-use efficiency (LUE) has gained wide interest as an input to modeling forest gross primary productivity (GPP). The photochemical reflectance index (PRI) has been identified as a principle means to inform LUE-based models, using airborne and satellite-based observations of canopy reflectance. More recently, low-cost electronics have become available with the potential to provide for dense in situ time-series measurements of PRI. A recent design makes use of interference filters to record light transmission within narrow wavebands. Uncertainty remains as to the dynamic range of these sensors and performance under low light conditions, the placement of the reference band, and methodology for reflectance calibration. This paper presents a low-cost sensor design and is tested in a laboratory set-up, as well in the field. The results demonstrate an excellent performance against a calibration standard (R2 = 0.9999) and at low light conditions. Radiance measurements over vegetation demonstrate a reversible reduction in green reflectance that was, however, seen in both the reference and signal wavebands. Time-series field measurements of PRI in a Douglas-fir canopy showed a weak correlation with eddy-covariance-derived LUE and a significant decline in PRI over the season. Effects of light quality, bidirectional scattering effects, and possible sensor artifacts on PRI are discussed.