1. Applications of Circulating Tumor DNA in a Cohort of Phase I Solid Tumor Patients Treated With Immunotherapy
- Author
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Dax Torti, Eric Plackmann, Aoife J McCarthy, Helen Chow, Aaron R. Hansen, Alberto Leon, Kayla Marsh, Lisa Wang, Daniel Vilarim Araujo, Hal K. Berman, Anna Spreafico, Xue Wu, Lillian L. Siu, Hua Bao, Philippe L. Bedard, Albiruni-Abdul Razak, Trevor J. Pugh, and Ao Wang
- Subjects
Oncology ,Adult ,Male ,Cancer Research ,medicine.medical_specialty ,medicine.medical_treatment ,DNA Mutational Analysis ,Phases of clinical research ,Pilot Projects ,Kaplan-Meier Estimate ,medicine.disease_cause ,Article ,Circulating Tumor DNA ,Cohort Studies ,03 medical and health sciences ,Mutation Accumulation ,Young Adult ,0302 clinical medicine ,Internal medicine ,Neoplasms ,medicine ,Humans ,Solid tumor ,Allele frequency ,Immune Checkpoint Inhibitors ,030304 developmental biology ,Aged ,Proportional Hazards Models ,0303 health sciences ,Mutation ,Paraffin Embedding ,Clinical Trials, Phase I as Topic ,business.industry ,Immunotherapy ,Exploratory analysis ,Middle Aged ,Prognosis ,Treatment Outcome ,Circulating tumor DNA ,030220 oncology & carcinogenesis ,Cohort ,Female ,business ,AcademicSubjects/MED00010 - Abstract
Background The correlation between blood-based tumor mutation burden (bTMB) and tissue-based tumor mutation burden(tTMB) has not been broadly tested in a multicancer cohort. Here, we assess the correlation between bTMB with tTMB in phase I trial patients treated with immunotherapy. As an exploratory analysis, we evaluated circulating tumor DNA (ctDNA) dynamics in responders. Methods Patients treated with immunotherapy at the Princess Margaret phase I trials unit were enrolled. Pretreatment plasma ctDNA and matched normal blood controls were collected. Available archival tissue formalin-fixed paraffin-embedded (FFPE) samples were analyzed. A 425-gene panel was used to sequence both ctDNA and FFPE samples. Samples with TMB within the highest tertile were considered as high TMB. Results Thirty-eight patients were accrued from 25 different trials, 86.8% of which involved an anti-PD-1/PD-L1 agent. Thirty patients (78.9%) had detectable mutations in ctDNA, of which the median (range) bTMB was 5 (1-53) mutations per megabase (mut/Mb). Of the 22 patients with available FFPE samples, mutations were detected in 21 (95.4%); the median (range) tTMB was 6 (2-124) mut/Mb. Among the 16 patients with detectable mutations in both FFPE and ctDNA, a statistically significant correlation between bTMB and tTMB was observed (ρ = 0.71; P = .002). High TMB was not associated with better survival. All 3 responders had a decrease in the variant allele frequency of mutations detected in ctDNA at a second timepoint relative to baseline, indicating a potential early marker of response. Conclusions In this small series, bTMB correlated with tTMB. An on-treatment decrease in VAF of mutations detected in ctDNA at baseline was observed in responders. Larger studies to verify our findings are warranted.
- Published
- 2021