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It is a general problem in geoscience to estimate the time-series of velocity and temperature fields for a fluid based on limited observations, such as the flow velocity at the fluid surface and/or a temperature snapshot after flow. In this study, an adjoint-based data assimilation method (also known as 4-D variational data assimilation) was used to reconstruct the thermal convection in a highly viscous fluid (e.g. Earth's mantle) to investigate which observations constrain the thermal convection and how accurately the convection can be reconstructed for different wavelengths. The data assimilated to the adjoint-based model were generated synthetically from forward models with convecting cells of different length-scales. Based on the surface velocity and temperature snapshot, our simulations successfully reconstructed thermal convection over 50 Myr in the case that the wavelength of the convective cells is sufficiently large. We obtained two main results from this parametric study. (1) When we only considered instantaneous thermal structure fitting in the cost function, the convection reconstruction tended to fail. However, there are some cases where the laminar thermal convection can be reconstructed by assimilating only the velocity along the fluid surface. (2) There is a limit to the reconstruction of thermal convection in the case that the convecting cells are small (∼1000 km for a 50 Myr reconstruction). We propose that (1) is related to the balance of forces due to the thermal buoyancy and viscous stress around the thermal anomalies and (2) is related to how information is preserved (i.e. how the previous thermal structure is maintained in the observable state throughout the convection process). The results enable the use of geological records to estimate time-series of velocity and temperature in Earth's deep interior, even though the records may only contain information from shallow parts of Earth. [ABSTRACT FROM AUTHOR]

The detection of earthquakes is a fundamental prerequisite for seismology and contributes to various research areas, such as forecasting earthquakes and understanding the crust/mantle structure. Recent advances in machine learning technologies have enabled the automatic detection of earthquakes from waveform data. In particular, various state-of-the-art deep-learning methods have been applied to this endeavour. In this study, we proposed and tested a novel phase detection method using deep learning, which is based on a standard convolutional neural network in a new framework. The novelty of the proposed method is its separate explicit learning strategy for global and local representations of waveforms, which enhances its robustness and flexibility. Prior to modelling the proposed method, we identified local representations of the waveform by the multiple clustering of waveforms, in which the data points were optimally partitioned. Based on this result, we considered a global representation and two local representations of the waveform. Subsequently, different phase detection models were trained for each global and local representation. For a new waveform, the overall phase probability was evaluated as a product of the phase probabilities of each model. This additional information on local representations makes the proposed method robust to noise, which is demonstrated by its application to the test data. Furthermore, an application to seismic swarm data demonstrated the robust performance of the proposed method compared with those of other deep learning methods. Finally, in an application to low-frequency earthquakes, we demonstrated the flexibility of the proposed method, which is readily adaptable for the detection of low-frequency earthquakes by retraining only a local model. [ABSTRACT FROM AUTHOR]

Uncovering the distribution of magnitudes and arrival times of aftershocks is a key to comprehending the characteristics of earthquake sequences, which enables us to predict seismic activities and conduct hazard assessments. However, identifying the number of aftershocks immediately after the main shock is practically difficult due to contaminations of arriving seismic waves. To overcome this difficulty, we construct a likelihood based on the detected data, incorporating a detection function to which Gaussian process regression (GPR) is applied. The GPR is capable of estimating not only the parameters of the distribution of aftershocks together with the detection function, but also credible intervals for both the parameters and the detection function. The property that the distributions of both the Gaussian process and aftershocks are exponential functions leads to an efficient Bayesian computational algorithm to estimate hyperparameters. After its validation through numerical tests, the proposed method is retrospectively applied to the catalogue data related to the 2004 Chuetsu earthquake for the early forecasting of the aftershocks. The results show that the proposed method stably and simultaneously estimates distribution parameters and credible intervals, even within t ≤ 3 hr after the main shock. [ABSTRACT FROM AUTHOR]

Tide gauge observations along the coastline of Japan have recorded the land sinking due to the continuous subduction of the oceanic plates, indicating that stress and strain energies have been accumulating at the plate boundary, which would eventually cause large oceanic trench earthquakes like the 2011 Great East Japan Earthquake. The proposed method extracts such long-term activities of the Earth's crust together with rapid displacements related to earthquakes, even before the establishment of the global positioning system, from monthly mean data of the sea levels. A state space model decomposes the tide gauge time series into trend, seasonal, autoregressive and observation noise components, each of which are estimated using the particle filter algorithm. The spatial and temporal distributions of the extracted trend component clearly indicate high-risk regions, near which giant earthquakes have occurred or are predicted to occur. A multivariate analysis of the observatories located at the northeast coast of Japan successfully determines the past crustal displacement in the case of the 1978 Off-Miyagi Earthquake. The proposed method has the potential application for monitoring crustal activities related to the accumulation of earthquake energy. [ABSTRACT FROM PUBLISHER]

Motivation Biochemical reactions in cells are made of several types of biological circuits. In current systems biology, making differential equation (DE) models simulatable in silico has been an appealing, general approach to uncover a complex world of biochemical reaction dynamics. Despite of a need for simulation-aided studies, our research field has yet provided no clear answers: how to specify kinetic values in models that are difficult to measure from experimental/theoretical analyses on biochemical kinetics. Results: We present a novel non-parametric Bayesian approach to this problem. The key idea lies in the development of a Dirichlet process (DP) prior distribution, called Bayesian experts, which reflects substantive knowledge on reaction mechanisms inherent in given models and experimentally observable kinetic evidences to the subsequent parameter search. The DP prior identifies significant local regions of unknown parameter space before proceeding to the posterior analyses. This article reports that a Bayesian expert-inducing stochastic search can effectively explore unknown parameters of in silico transcription circuits such that solutions of DEs reproduce transcriptomic time course profiles. [ABSTRACT FROM AUTHOR]