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As an important habitat for microorganisms, the phyllosphere has a great impact on plant growth and health, and changes in phyllosphere microorganisms are closely related to the occurrence of leaf diseases. However, there remains a limited understanding regarding alterations to the microbial community in the phyllosphere resulting from pathogen infections. Here, we analyzed and compared the differences in phyllosphere microorganisms of powdery mildew cucumber from three disease severity levels (0% < L1 < 30%, 30% ≤ L2 < 50%, L3 ≥ 50%, the number represents the lesion coverage rate of powdery mildew on leaves). There were significant differences in α diversity and community structure of phyllosphere communities under different disease levels. Disease severity altered the community structure of phyllosphere microorganisms, Rosenbergiella, Rickettsia , and Cladosporium accounted for the largest proportion in the L1 disease grade, while Bacillus, Pantoea, Kocuria , and Podosphaera had the highest relative abundance in the L3 disease grade. The co-occurrence network analysis of the phyllosphere microbial community indicated that the phyllosphere bacterial community was most affected by the severity of disease. Our results suggested that with the development of cucumber powdery mildew, the symbiotic relationship between species was broken, and the entire bacterial community tended to compete. [ABSTRACT FROM AUTHOR]

Urbanization often results in biodiversity loss and homogenization, but this result is not universal and there is substantial variability in the spatiotemporal effects of urbanization on wildlife across cities and taxa. Areas with lower population and housing density are some of the fastest-growing regions in the western United States; thus, more research in these areas could offer additional insight into the effects of urbanization on wildlife and the potential importance of wild spaces in maintaining a diverse biotic community surrounding developed areas. To address this need, we conducted a study to identify the effects of urbanization (i.e. housing density) on mammals along a housing density gradient from wilderness to suburbia in Missoula, Montana. We deployed 178 motion-activated trail cameras at random sites within urban/suburban, exurban, rural, and wild regions from May to October 2019 to 2020. We identified all mammals >150 g, then evaluated how housing density influenced: (i) occupancy and (ii) species richness using multispecies occupancy models; (iii) relative abundance using Poisson models; and (iv) diel activity patterns using kernel density estimation and logistic regression. Urbanization was the strongest driver of mammal distribution, with a linear decline in mammal species richness as housing density increased. Urbanization also had strong effects on occupancy and detection rates, with larger-bodied mammals generally having stronger negative associations. Overall, mammal relative abundance was highest in suburban regions; however, this effect was largely driven by White-tailed Deer. Natural environmental factors explained most changes in mammal nocturnal activity; however, urbanization strongly affected nocturnality in some species, with Black Bear and White-tailed Deer becoming more nocturnal and Red Fox and Northern Raccoon becoming less nocturnal as housing density increased. While our study confirms that some mammals can live and thrive in developed areas, it emphasizes the importance of maintaining wild areas for those species that cannot. [ABSTRACT FROM AUTHOR]

Traps (or pots) are one of the oldest and most widespread scientific survey gears for fish and decapod crustaceans around the world. Here, I review and synthesize the extensive scientific literature describing the various benefits and drawbacks of using traps as a survey gear in scientific studies. The widespread use of traps in fish and decapod surveys is due to several characteristics like their low cost, flexible design, ease of use, ability to fish unattended, and being amenable to pairing with other gears. However, there are a number of significant drawbacks of using traps, including highly variable catches due to environmental fluctuations or behavioral interactions or lost traps that continue catching and killing animals, that must be considered and accounted for when initiating trap surveys. This study highlights the types of habitats and species most and least suited for monitoring by traps, and emphasizes the importance of matching the goals and objectives of a trap survey with the correct trap design, mouth entrance, bait type, soak time, and pairing of gears. Pilot studies are also recommended before surveys are initiated to quantify the selectivity patterns of traps and identify the various factors that may influence trap catch. [ABSTRACT FROM AUTHOR]

The objective was to determine the effects of induced hindgut acidosis in sheep on rumen, cecal, and fecal microbiome. Ruminally and cecally cannulated ewes [n = 11; body weight (BW) = 49 ± 4 kg] were assigned to one of two treatments: control (CON; n = 5) or induced hindgut acidosis (HGA; n = 6). To induce hindgut acidosis, 3 g wheat starch/kg BW per 24 h was continuously infused via the cecal cannula for 4 d. Control ewes received a constant infusion of deionized water. The diet contained 40% grass hay pellets, 35% whole shelled corn, 15% dried distillers grains, and 10% alfalfa cubes. On d 0, 2, and 4, immediately before feeding, and 12 h after feeding, rumen fluid, cecal fluid, and fecal samples were frozen in liquid nitrogen and stored at -80°C. Microbial DNA from samples were extracted using the QIAamp PowerFecal Pro DNA Kit. Full length 16S rRNA amplicon libraries were prepared using Kinnex kits and then sequenced on the PacBio Revio platform. Reads were analyzed using DADA2 and QIIME2. Statistical analysis was performed with the GLIMMIX procedure of SAS 9.4 (SAS Inst. Inc., Cary, NC) with the fixed effect of treatment, time, and their interaction. Data from d 0 was utilized as a covariate. There was a treatment effect (P < 0.01) for relative abundance of Christensenellaceae R7 group, Bacteroides, Akkermansia, Ruminococcus, and Treponema in cecal contents, with CON ewes having greater relative abundance than HGA ewes. Conversely, HGA had greater (P < 0.01) relative abundance of Bifidobacterium, Streptococcus, and Limosilactobacillus in cecal contents than CON ewes. Fusobacterium necrophorum was detected in all cecal samples after h 0 averaging 4.3% of reads, but was not affected by treatment, time, or their interaction. Trueperella pyogenes was detected in more than 80% of cecal samples after h 0 and averaged 0.25% of detected reads. In feces, there was a treatment effect (P < 0.01) for relative abundance of Bacteroides, Akkermansia, and Treponema, with CON ewes having greater relative abundance than HGA ewes. Relative abundance of Bifidobacterium and Streptococcus were greater (P < 0.01) in HGA feces than CON. A treatment by time interaction (P = 0.02) was observed for both fecal Ruminococcus and Christensenellaceae R7 group relative abundance, as relative abundance did not change in CON ewes but decreased in HGA after h 24. There were no effects of treatment, time, or their interaction (P ≥ 0.15) for relative abundance of Prevotella, Ruminococcus, Christensenellaceae R7 group, Selenomonas, or Rikenellaceae RC9 gut group in rumen fluid. Prevotellaceae UCG-001 relative abundance was affected (P = 0.04) by treatment with CON ewes having greater relative abundance than HGA ewes. Induced hindgut acidosis drastically altered the microbiome composition of cecal contents and feces. [ABSTRACT FROM AUTHOR]

Feral and free-roaming domestic cats (Felis catus) are invasive predators throughout the world. In some areas, cats occur in higher densities than native mammalian predators and can have severe effects upon prey populations. We set 48 wildlife game cameras in residential yards in Arkansas, USA, to evaluate which landscape and yard features influenced cat abundance occurring in yards. In addition, we quantified the daily activity patterns of free-roaming cats and explored how habitat features or predator activity influenced the timing of cat activity. We found that cats were present in 70.8% of yards with an average of three recognizable individuals per yard. Abundance of cats was higher than all native mesopredators except for raccoon (Procyon lotor) and Virginia opossum (Didelphis virginiana). Cat abundance and minimum population decreased when forest cover was high within 400 m of the camera. Cats were active at all times of the day but tended to be more diurnal in areas closer to city centers or in agricultural settings. Conversely, cats were more nocturnal later in the summer and in areas that had high levels of predator activity. Our results indicate that cats are widespread in this region and their relative abundance is driven more by landscape features than by yard features, possibly due to their large home ranges. Cats may alter their activity to better coexist with predators. Alteration in yard features is unlikely to be an effective deterrent for cats and more direct control measures may be necessary. [ABSTRACT FROM AUTHOR]

The microbiome is a complex and dynamic community of microorganisms that co-exist interdependently within an ecosystem, and interact with its host or environment. Longitudinal studies can capture temporal variation within the microbiome to gain mechanistic insights into microbial systems; however, current statistical methods are limited due to the complex and inherent features of the data. We have identified three analytical objectives in longitudinal microbial studies: (1) differential abundance over time and between sample groups, demographic factors or clinical variables of interest; (2) clustering of microorganisms evolving concomitantly across time and (3) network modelling to identify temporal relationships between microorganisms. This review explores the strengths and limitations of current methods to fulfill these objectives, compares different methods in simulation and case studies for objectives (1) and (2), and highlights opportunities for further methodological developments. R tutorials are provided to reproduce the analyses conducted in this review. [ABSTRACT FROM AUTHOR]

Temporal niche shifts can shape predator–prey interactions by enabling predator avoidance, enhancing feeding success, and reducing competition among predators. Using a community-based conservation approach, we investigated temporal niche partitioning of mammalian predators and prey across 12 long-term camera trap surveys in the Pacific slope and Talamanca Cordillera of Costa Rica. Temporal overlap and segregation were investigated between predator–prey and predator–predator pairs using overlap analysis, circular statistics, and relative abundance after accounting for differences in habitat, season, and human impact among sites. We made the assumption that predators select abundant prey and adjust their activity to maximize their temporal overlap, thus we predicted that abundant prey with high overlap would be preferred prey species for that predator. We also predicted that similar-sized pairs of predator species with the greatest potential for competitive interactions would have the highest temporal segregation. Our results supported the existence of temporal niche separation among the eight species of predators—the smaller Leopardus felids (ocelot, margay, oncilla) were primarily nocturnal, the largest felids (jaguar and puma) and coyote were cathemeral, and the smaller jaguarundi and tayra were mostly diurnal. Most prey species (67%) were primarily nocturnal versus diurnal or cathemeral (33%). Hierarchical clustering identified relationships among species with the most similar activity patterns. We discuss the primary prey and competitor species predicted for each of the eight predators. Contrary to our prediction, the activity pattern of similar-sized intraguild competitors overlapped more than dissimilar-sized competitors, suggesting that similar-sized predators are hunting the same prey at the same time. From this we conclude that prey availability is more important than competition in determining circadian activity patterns of Neotropical predators. Our results indicate the presence of a delicate balance of tropical food webs that may be disrupted by overhunting, leading to a depauperate community consisting of ubiquitous generalists and endangered specialists. With Central America a hotspot for hunting-induced "empty forests," community-based conservation approaches may offer the best road to reduce illegal hunting and maintain the biodiversity and community structure of tropical forest systems. [ABSTRACT FROM AUTHOR]

Introduction: Epidemiological studies that investigate alterations in the gut microbial composition associated with smoking are lacking. This study examined the composition of the gut microbiome in smokers compared with nonsmokers.Aims and Methods: Stool samples were collected in a cross-sectional study of 249 participants selected from the Health Effects of Arsenic Longitudinal Study in Bangladesh. Microbial DNA was extracted from the fecal samples and sequenced by 16S rRNA gene sequencing. The associations of smoking status and intensity of smoking with the relative abundance or the absence and presence of individual bacterial taxon from phylum to genus levels were examined.Results: The relative abundance of bacterial taxa along the Erysipelotrichi-to-Catenibacterium lineage was significantly higher in current smokers compared to never-smokers. The odds ratio comparing the mean relative abundance in current smokers with that in never-smokers was 1.91 (95% confidence interval = 1.36-2.69) for the genus Catenibacterium and 1.89 (95% confidence interval = 1.39-2.56) for the family Erysipelotrichaceae, the order Erysipelotrichale, and the class Erysipelotrichi (false discovery rate-adjusted p values = .0008-.01). A dose-response association was observed for each of these bacterial taxa. The presence of Alphaproteobacteria was significantly greater comparing current with never-smokers (odds ratio = 4.85, false discovery rate-adjusted p values = .04).Conclusions: Our data in a Bangladeshi population are consistent with evidence of an association between smoking status and dosage with change in the gut bacterial composition.Implications: This study for the first time examined the relationship between smoking and the gut microbiome composition. The data suggest that smoking status may play an important role in the composition of the gut microbiome, especially among individuals with higher levels of tobacco exposure. [ABSTRACT FROM AUTHOR]

Heterospecific mating frequency is critical to hybrid zone dynamics and can directly impact the strength of reproductive barriers and patterns of introgression. The effectiveness of post‐mating prezygotic (PMPZ) reproductive barriers, which include reduced fecundity via heterospecific matings and conspecific sperm precedence, may depend on the number, identity and order of mates. Studies of PMPZ barriers suggest that they may be important in many systems, but whether these barriers are effective at realistic heterospecific mating frequencies has not been tested. Here, we evaluate the strength of cryptic reproductive isolation in two leaf beetles (Chrysochus auratus and C. cobaltinus) in the context of a range of heterospecific mating frequencies observed in natural populations. We found both species benefited from multiple matings, but the benefits were greater in C. cobaltinus and extended to heterospecific matings. We found that PMPZ barriers greatly limited hybrid production by C. auratus females with moderate heterospecific mating frequencies, but that their effectiveness diminished at higher heterospecific mating frequencies. In contrast, there was no evidence for PMPZ barriers in C. cobaltinus females at any heterospecific mating frequency. We show that integrating realistic estimates of cryptic isolation with information on relative abundance and heterospecific mating frequency in the field substantially improves our understanding of the strong directional bias in F1 production previously documented in the Chrysochus hybrid zone. Our results demonstrate that heterospecific mating frequency is critical to understanding the impact of cryptic post‐copulatory barriers on hybrid zone structure and dynamics, and that future studies of such barriers should incorporate field‐relevant heterospecific mating frequencies. [ABSTRACT FROM AUTHOR]

High-throughput sequencing of a targeted genetic marker is being widely used to analyze biodiversity across taxa and environments. Amid a multitude of exciting findings, scientists have also identified and addressed technical and biological limitations. Improved study designs and alternative sampling, lab and bioinformatic procedures have progressively enhanced data quality, but some problems persist. This article provides a framework to recognize and bypass the main types of errors that can affect metabarcoding data: false negatives, false positives, artifactual variants, disproportions and incomplete or incorrect taxonomic identifications. It is crucial to discern potential error impacts on different ecological parameters (e.g. taxon distribution, community structure, alpha and beta-diversity), as error management implies compromises and is thus directed by the research question. Synthesis of multiple plankton metabarcoding evaluations (mock sample sequencing or microscope comparisons) shows that high-quality data for qualitative and some semiquantitative goals can be achieved by implementing three checkpoints: first, rigorous protocol optimization; second, error minimization; and third, downstream analysis that considers potentially remaining biases. Conclusions inform us about the reliability of metabarcoding for plankton studies and, because plankton provides unique chances to compare genotypes and phenotypes, the robustness of this method in general. [ABSTRACT FROM AUTHOR]

Stink bugs (Hemiptera: Pentatomidae) are an increasing threat to soybean (Fabales: Fabaceae) production in the North Central Region of the United States, which accounts for 80% of the country's total soybean production. Characterization of the stink bug community is essential for development of management programs for these pests. However, the composition of the stink bug community in the region is not well defined. This study aimed to address this gap with a 2-yr, 9-state survey. Specifically, we characterized the relative abundance, richness, and diversity of taxa in this community, and assessed phenological differences in abundance of herbivorous and predatory stink bugs. Overall, the stink bug community was dominated by Euschistus spp. (Hemiptera: Pentatomidae) and Chinavia hilaris (Say) (Hemiptera: Pentatomidae). Euschistus variolarius (Palisot de Beauvois) (Hemiptera: Pentatomidae), C. hilaris and Halyomorpha halys (Stål) (Hemiptera: Pentatomidae) were more abundant in the northwestern, southeastern and eastern parts, respectively, of the North Central Region of the United States. Economically significant infestations of herbivorous species occurred in fields in southern parts of the region. Species richness differed across states, while diversity was the same across the region. Herbivorous and predatory species were more abundant during later soybean growth stages. Our results represent the first regional characterization of the stink bug community in soybean fields and will be fundamental for the development of state- and region-specific management programs for these pests in the North Central Region of the United States. [ABSTRACT FROM AUTHOR]

Background and Aims The genus Solanum includes important vegetable crops and their wild relatives. Introgression of their useful traits into elite cultivars requires effective recombination between hom(e)ologues, which is partially determined by genome sequence differentiation. In this study we compared the repetitive genome fractions of wild and cultivated species of the potato and tomato clades in a phylogenetic context. Methods Genome skimming followed by a clustering approach was used as implemented in the RepeatExplorer pipeline. Repeat classes were annotated and the sequences of their main domains were compared. Key Results Repeat abundance and genome size were correlated and the larger genomes of species in the tomato clade were found to contain a higher proportion of unclassified elements. Families and lineages of repetitive elements were largely conserved between the clades, but their relative proportions differed. The most abundant repeats were Ty3/ Gypsy elements. Striking differences in abundance were found in the highly dynamic Ty3/ Gypsy Chromoviruses and Ty1/ Copia Tork elements. Within the potato clade, early branching Solanum cardiophyllum showed a divergent repeat profile. There were also contrasts between cultivated and wild potatoes, mostly due to satellite amplification in the cultivated species. Interspersed repeat profiles were very similar among potatoes. The repeat profile of Solanum etuberosum was more similar to that of the potato clade. Conclusions The repeat profiles in Solanum seem to be very similar despite genome differentiation at the level of collinearity. Removal of transposable elements by unequal recombination may have been responsible for structural rearrangements across the tomato clade. Sequence variability in the tomato clade is congruent with clade-specific amplification of repeats after its divergence from S. etuberosum and potatoes. The low differentiation among potato and its wild relatives at the level of interspersed repeats may explain the difficulty in discriminating their genomes by genomic in situ hybridization techniques. [ABSTRACT FROM AUTHOR]

Constructing water developments to support anthropogenic activities and particular fauna is pervasive across many arid regions of the globe. Despite their prevalence and a predicted increase as a management and conservation tool, water developments may have complex and unanticipated impacts on wildlife. For example, the addition of water developments to the Great Basin Desert in the western United States may have indirectly contributed to a decrease in distribution and abundance of kit foxes (Vulpes macrotis). From 2010 to 2013, we examined survival, relative abundance, and habitat characteristics of kit foxes in relation to water developments on the U.S. Army Dugway Proving Ground, Utah, using a before-after control-impact design. We collected 2 years of baseline data prior to reducing availability of water and continued data collection for another 2 years after removal of water on one-half of the study area. We found no evidence that removing water influenced survival or abundance of kit foxes. In addition, we found areas associated with the majority of water developments differed from current kit fox territories in elevation, soil type, and dominant cover type; historical use by kit foxes of areas associated with water developments is largely unknown. One explanation for our inability to find support for a water effect is that observed changes in the kit fox population and canid community in the Great Basin are attributable to changes in coyote management practices that temporally coincided with, but were largely unrelated to increases in water availability. [ABSTRACT FROM AUTHOR]

Background. Multidrug-resistant Enterobacteriaceae (MRE) are widespread in the community, especially in tropical regions. Travelers are at risk of acquiringMRE in these regions, but the precise extent of the problem is not known. Methods. From February 2012 to April 2013, travelers attending 6 international vaccination centers in the Paris area prior to traveling to tropical regions were asked to provide a fecal sample before and after their trip. Those found to have acquired MRE were asked to send fecal samples 1, 2, 3, 6, and 12 months after their return, or until MRE was no longer detected. The fecal relative abundance of MRE among all Enterobacteriaceae was determined in each carrier. Results. Among 824 participating travelers, 574 provided fecal samples before and after travel and were not MRE carriers before departure. Of these, 292 (50.9%) acquired an average of 1.8 MRE. Three travelers (0.5%) acquired carbapenemase- producing Enterobacteriaceae. The acquisition rate was higher in Asia (142/196 [72.4%]) than in sub-Saharan Africa (93/195 [47.7%]) or Latin America (57/183 [31.1%]). MRE acquisition was associated with the type of travel, diarrhea, and exposure to ß-lactams during the travel. Three months after return, 4.7% of the travelers carried MRE. Carriage lasted longer in travelers returning from Asia and in travelers with a high relative abundance of MRE at return. Conclusions. MRE acquisition is very frequent among travelers to tropical regions. Travel to these regions should be considered a risk factor of MRE carriage during the first 3 months after return, but not beyond. [ABSTRACT FROM AUTHOR]

Stink bugs are the primary arthropod soybean pests in the southern United States. Historically, important stink bug species damaging soybeans in the southern United States included the southern green stink bug Nezara viridula (L.), the green stink bug Chinavia hilaris (Say), and the brown stink bug Euschistus servus (Say) (Hemiptera: Pentatomidae). The redbanded stink bug, Piezodorus guildinii (Westwood), has recently become an economic pest of soybean in the southern region of the United States, especially in Louisiana and Texas. Little is known about current stink bug species composition and relative abundance in Texan soybean agro-ecosystems. To fill this gap, commercial soybean fields in the Upper Gulf Coast of Texas were sampled weekly during the growing season using a sweep net throughout R2 (full flowering) to R7 (beginning maturity) from 2011 to 2013. Adults and nymphs (third, fourth, and fifth instars) of redbanded stink bug, southern green stink bug, green stink bug, and brown stink bug were counted per 25 sweeps. The relative abundance of redbanded stink bug was significantly higher than any other stink bug species throughout 2011-2013. Over 65%of the total population of major stink bugs collected during this period were redbanded stink bugs and ≈19% were southern green stink bugs. The highest redbanded stink bug densities and the highest ratio of redbanded stink bug nymphs to adults were recorded at R7. Results from this study show that redbanded stink bug has become the predominant stink bug species in soybean in the Upper Gulf Coast of Texas. [ABSTRACT FROM AUTHOR]

Hybridization is a well-known phenomenon, but there are still relatively few studies addressing the question of reproductive isolation between related sympatric animal species with largely overlapping ranges. Population density, relative abundance, and operational sex ratio ( OSR) are among the factors known to have an influence on the frequency of heterospecific matings in sympatric populations. Here we had two aims. First, we used microsatellite markers and field observations to study the frequency of hybrids, and backcrosses, and the rate of heterospecific matings between two sympatric damselfly species Calopteryx splendens ( Harris, 1780) and Calopteryx virgo ( Linné, 1758). Second, we investigated the role of population densities, relative abundances, and OSRs on conspecific and heterospecific mating rates. Altogether we genotyped 2104 individuals from both species and found four hybrids (0.19%), one of which was a backcross. Of all the 272 matings observed, 17 (6%) were between heterospecifics, and all of these were between a C. splendens male and a C. virgo female. In addition, all of the hybrids contained mitochondrial DNA ( mtDNA) of C. virgo. We show that the population density of C. virgo, which was the maternal species of all the heterospecific matings and hybrid individuals, was the only significant factor covarying with the rate of the heterospecific matings. The OSRs did not correlate with the rate of con- or heterospecific matings. Studies on interspecific interactions in sympatric species can give information about the maintenance of reproductive isolation, and thus speciation. © 2012 The Linnean Society of London [ABSTRACT FROM AUTHOR]

The article details a study which examined the biological characteristics, including seasonal fluctuation, relative abundance and sex ratio, of fruit flies (Diptera: Tephritidae) that attack Cucurbitaceae on Reunion Island. Study findings showed high variability in seasonal fluctuation of populations according to local conditions. Bactrocera cucurbitae was found to be the least abundant species compared to Dacus ciliatus and Dacus demmerezi.

The article discusses a study which compared termite assemblages between neighboring areas under different disturbance level. The study found that termite species richness decreased from 25 species in the Lamto forest to 13 species in the rural area. It also revealed that the relative abundance of termites have greater decline in the rural domain, including the Ancistrotermes cavithorax species.

The article focuses on a research conducted in order to assess the relationships between relative abundance and environmental variables of the scorpion, Microtityus jaumei in Sierra de Canasta, Cuba. It discusses an increase in activity over the year by assessing the population dynamics of Microtityus. The study revealed the relation of the abundance of scorpions with density of the canopy and thickness of the substrate.

Habitat fragmentation often separates and reduces populations of vertebrates, but the relative effects of habitat attributes within remnant patches versus the matrix surrounding the patches are less clear. For snowshoe hares (Lepus americanus) lower densities and disrupted cycles in their southern range have been ascribed to habitat fragmentation, although relevant scales of landscape influence remain unknown. In a fragmented forest in north-central Washington we counted fecal pellets of snowshoe hares to examine the extent to which relative snowshoe hare densities within stands of suitable habitat changed with the composition of surrounding habitats. Pellet densities were associated primarily with density of large shrubs and saplings and medium trees within a stand. Pellet densities also were correlated positively with the amount of moist forest (dominated by Engelmann spruce [Picea engelmannii] and subalpine fir [Abies lasiocarpa]) and correlated negatively with the amount of open-structured habitat within 300 m of the stand perimeter. These results suggest that forest managers will have positive impacts on hare densities by managing both focal stands and the surrounding stands for the higher densities of large shrubs and saplings and medium trees that hares select. [ABSTRACT FROM AUTHOR]

We sampled five Achnatherum sibiricum populations and documented the distribution and abundance of endophytes. In total, 438 fungal isolates were obtained. They were classified into 11 morphotypes based on growth rate and morphological characters including colonial morphology, the production of conidiogenous cells, conidial size and dimension on potato dextrose agar medium. Both tub2 and actG sequences identified only a single product in all representative isolates from three dominant morphotypes. All sequences fell in the same main clade, including Neotyphodium gansuense and Neotyphodium gansuense var. inebrians from another Achnatherum species in North China, Achnatherum inebrians, and Neotyphodium guerinii from European grasses Melica ciliate and Melica transsilvanica. Based on both morphological and phylogenetic analyses, isolates in morphotype I were described as representing a novel Neotyphodium species, Neotyphodium sibiricum sp. nov. Isolates in both morphotype II and III were identified as representing N. gansuense. Both tub2 and actG sequences suggested that N. sibiricum and N. guerinii were probably derived from a common Epichloë ancestor. [ABSTRACT FROM AUTHOR]

To determine the abundance and distribution of bacterial and archaeal ammonia oxidizers in alpine and permafrost soils, 12 soils at altitudes of 4000–6550 m above sea level (m a.s.l.) were collected from the northern slope of the Mount Everest (Tibetan Plateau), where the permanent snow line is at 5800–6000 m a.s.l. Communities were characterized by real-time PCR and clone sequencing by targeting on amoA genes, which putatively encode ammonia monooxygenase subunit A. Archaeal amoA abundance was greater than bacterial amoA abundance in lower altitude soils (≤5400 m a.s.l.), but this situation was reversed in higher altitude soils (≥5700 m a.s.l.). Both archaeal and bacterial amoA abundance decreased abruptly in higher altitude soils. Communities shifted from a Nitrosospira amoA cluster 3a-dominated ammonia-oxidizing bacteria community in lower altitude soils to communities dominated by a newly designated Nitrosospira ME and cluster 2-related groups and Nitrosomonas cluster 6 in higher altitude soils. All archaeal amoA sequences fell within soil and sediment clusters, and the proportions of the major archaeal amoA clusters changed between the lower altitude and the higher altitude soils. These findings imply that the shift in the relative abundance and community structure of archaeal and bacterial ammonia oxidizers may result from selection of organisms adapted to altitude-dependent environmental factors in elevated soils. [ABSTRACT FROM AUTHOR]

The population dynamics of a fire ant (Solenopsis invicta Buren) parasitoid (Pseudacteon tricuspis Borgmeier) was studied in Louisiana. The objectives of this study were to understand the daily and seasonal population dynamics of P. tricuspis in the context of environmental variables, determine whether P. tricuspis populations were synchronized over local and regional scales, determine the sex ratios and frequency distributions of P. tricuspis at disturbed S. invicta mounds, and determine the minimum sample size and sampling methodology that would provide an estimate of the true relative abundance of P. tricuspis at any location. Daily patterns of relative abundance of P. tricuspis followed a quadratic pattern, with peak fly activity during the afternoon. Seasonally, P. tricuspis relative abundance was variable but tended to positively fluctuate with soil moisture levels. Peak seasonal population abundance occurred during the late summer and fall, whereas population abundance was lowest during the late winter and early spring. Population dynamics of P. tricuspis were found to be synchronized at local and regional scales, Sampling protocols were derived for sampling P. tricuspis populations in Louisiana to account for local spatial heterogeneity in relative population abundance. To obtain an estimate of the true relative population abundance of P. tricuspis, at least 15 S. invicta mounds should be sampled, preferably allocated in groups to different areas at a location to account for spatial population heterogeneity. Phorid fly sampling should be conducted during the afternoons during the summer and fall, when fly abundance is highest. [ABSTRACT FROM AUTHOR]

We used count surveys and mist-net captures to compare habitat associations, relative abundance, species richness, and community similarity of migrant landbirds among four major habitats in the Boise Foothills of southwestern Idaho. Count surveys were conducted from August through October 1997-2000 in conifer forest, mountain shrubland, shrubsteppe, and riparian shrubland. We compared bird detections among habitats for all birds pooled, individual species, and three migration strategies: Neotropical, temperate, and resident (including irruptive migrants). Mountain shrubland supported the highest numbers of temperate migrants; both mountain shrubland and riparian shrubland had the highest numbers of Neotropical migrants; and conifer forest had the highest numbers of residents. Species richness was highest in riparian shrubland and lowest in shrubsteppe, whereas diversity and evenness were highest in conifer forest and mountain shrubland. Mist netting was conducted from mid-July to mid-October in two habitats: mountain shrubland (1997-2002) and riparian shrubland (1998-1999). Captures (adjusted for effort) were compared among habitats in 1998-1999 and were similar for temperate migrants, whereas mountain shrubland had higher abundance of Neotropical migrants and riparian shrubland had higher abundance of irruptive migrants. Richness, diversity, and evenness were similar and there was high community similarity between mountain shrub and riparian shrubland habitats. These results emphasize the importance of montane habitats, especially deciduous shrub communities, to migrants in the Intermountain West. [ABSTRACT FROM AUTHOR]

Long-distance movements may play an important role in regulating populations of small mammals. To examine such movements, we livetrapped 1,712 deer mice (Peromyscus maniculatus) on 14-28 permanent traplines from autumn 1981 to spring 1990 on the Konza Prairie Biological Station, Kansas. These data were collected under a variety of climatic and biotic conditions that resulted in detection of >100 long-distance movements by deer mice between traplines (moves of 50-1,320 m). Males made more moves than females, but distance moved did not differ by sex. Age did not affect the number or distance of movements. On average, more long-distance moves occurred in spring and summer than in autumn, but distance did not differ by season. Proportion of the population making intertrapline movements was inversely related to abundance of deer mice. Deer mice did not exhibit a fire-positive response in long-distance movement. Our results indicate that deer mice may be more mobile than originally thought. Researchers should incorporate improved methods for detecting longer movements to better understand causes and consequences of these movements. [ABSTRACT FROM AUTHOR]

Invertebrate pests often show high morphological variation and wide environmental tolerances. Knowledge of how phenotypic variation is associated with environmental heterogeneity can elucidate the processes underpinning these patterns. Here we examine morphological variation and relative abundance along environmental gradients in a widespread agricultural pest, native to Australia, the wingless grasshopper Phaulacridium vittatum (Sjöstedt). We test for correlations between body size, wing presence, and stripe polymorphism with environmental variables. Using multiple regression and mixed-effects modeling, body size and stripe polymorphism were positively associated with solar radiation, and wing presence was positively associated with foliage projective cover (FPC). There were no associations between body size or morphological traits with relative abundance. However, relative abundance was positively associated with latitude, soil moisture, and wind speed, but was negatively associated with FPC. Therefore, sites with low relative abundance and high forest cover were more likely to contain winged individuals. Overall, our results suggest that environmental and climatic conditions strongly influence the relative abundance and the distribution of morphotypes in P. vittatum, which is likely to affect dispersal and fitness in different landscapes. This knowledge is useful for informing how environmental change might influence the future spread and impact of this agricultural pest. [ABSTRACT FROM AUTHOR]