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The 20th century commercial whaling industry severely reduced populations of great whales throughout the Southern Hemisphere. The effect of this exploitation on genetic diversity and population structure remains largely undescribed. Here, we compare pre- and post-whaling diversity of mitochondrial DNA (mtDNA) control region sequences for 3 great whales in the South Atlantic, such as the blue, humpback, and fin whale. Pre-whaling diversity is described from mtDNA extracted from bones collected near abandoned whaling stations, primarily from the South Atlantic island of South Georgia. These bones are known to represent the first stage of 20th century whaling and thus pre-whaling diversity of these populations. Post-whaling diversity is described from previously published studies reporting large-scale sampling of living whales in the Southern Hemisphere. Despite relatively high levels of surviving genetic diversity in the post-whaling populations, we found evidence of a probable loss of mtDNA lineages in all 3 species. This is evidenced by the detection of a large number of haplotypes found in the pre-whaling samples that are not present in the post-whaling samples. A rarefaction analysis further supports a loss of haplotypes in the South Atlantic humpback and Antarctic blue whale populations. The bones from former whaling stations in the South Atlantic represent a remarkable molecular archive for further investigation of the decline and ongoing recovery in the great whales of the Southern Hemisphere. [ABSTRACT FROM AUTHOR]

Humpback whales ( Megaptera novaeangliae) from a breeding ground off Gabon (0-4°S) and a migratory corridor/feeding ground on the west coast of South Africa (WSA; 33°S) differ genetically and in catch histories. Interpretation of the population structure is hampered by the lack of data from the intervening 3,500 km of coastline or to the north of Gabon. Here we collate all relevant nongenetic data on humpback whales from Namibia (∼23°S) from 2005 to 2012 and compare these with corresponding data from Gabon (2000-2006) and WSA (1983-2008). Data from Namibia include photographic catalogs of dorsal fin and tail fluke images, seasonal presence, and a photographic assessment of scarring and wounds from cookiecutter sharks ( Isistius sp.). No confirmed photographic identification matches could be made between Namibia and Gabon and only 2 potential matches were made between Namibia and WSA from dorsal fins. Humpback whales in Namibia show a bimodal seasonality in occurrence, with a primary peak in austral winter (July) and a secondary peak in spring (September), but generally low directionality of movement. Whales were never recorded to sing, competitive groups were rarely sighted, and very few calves were observed, making it unlikely that this is a breeding area. The prevalence of killer whale bite scars on flukes was similar at all sites. Fresh bites from cookiecutter sharks were highest in Namibia, intermediate in Gabon, but almost nonexistent in WSA. We propose that animals seen in Namibia in winter are on their northward migration and have intercepted the coast from farther offshore (where cookiecutter sharks occur), whereas animals seen in WSA in spring-summer, where they are feeding during their southward migration, have followed a slow coastwise route within the cold Benguela Ecosystem, thus allowing time for cookiecutter bites to heal. [ABSTRACT FROM AUTHOR]

Accurate identification of units for conservation is particularly challenging for marine species as obvious barriers to gene flow are generally lacking. Bryde’s whales (Balaenoptera spp.) are subject to multiple human-mediated stressors, including fisheries bycatch, ship strikes, and scientific whaling by Japan. For effective management, a clear understanding of how populations of each Bryde’s whale species/subspecies are genetically structured across their range is required. We conducted a population-level analysis of mtDNA control region sequences with 56 new samples from Oman, Maldives, and Bangladesh, plus published sequences from off Java and the Northwest Pacific. Nine diagnostic characters in the mitochondrial control region and a maximum parsimony phylogenetic analysis identified 2 genetically recognized subspecies of Bryde’s whale: the larger, offshore form, Balaenoptera edeni brydei, and the smaller, coastal form, Balaenoptera edeni edeni. Genetic diversity and differentiation indices, combined with a reconstructed maximum parsimony haplotype network, indicate strong differences in the genetic diversity and population structure within each subspecies. Discrete population units are identified for B. e. brydei in the Maldives, Java, and the Northwest Pacific and for B. e. edeni between the Northern Indian Ocean (Oman and Bangladesh) and the coastal waters of Japan. [ABSTRACT FROM PUBLISHER]

The conservation of species is one of the foundations of conservation biology. Successful species conservation has often been defined as simply the avoidance of extinction. We argue that this focus, although important, amounts to practicing conservation at the "emergency room door," and will never be a sufficient approach to conserving species. Instead, we elaborate a positive definition of species conservation on the basis of six attributes and propose a categorization of different states of species conservation using the extent of human management and the degree to which each of the attributes is conserved. These states can be used to develop a taxonomy of species "recovery" that acknowledges there are multiple stable points defined by ecological and social factors. With this approach, we hope to contribute to a new, optimistic conservation biology that is not based on underambitious goals and that seeks to create the conditions under which Earth's biological systems can thrive. [ABSTRACT FROM AUTHOR]