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Start Over Author "Shawn Li" Publisher oxford university press / usa
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1. Tree Gibbs Sampler: identifying conserved motifs without aligning orthologous sequences.

Author

Xiaohui Cai, Haiyan Hu, and Xiaoman Shawn Li

Subjects
GENOMES, BIOINFORMATICS, HAPLOIDY, MOTIF description (Movement notation)
Abstract

Summary: Tree Gibbs Sampler is a software for identifying motifs by simultaneously using the motif overrepresentation property and the motif evolutionary conservation property. It identifies motifs without depending on pre-aligned orthologous sequences, which makes it useful for the extraction of regulatory elements in multiple genomes of both closely related and distant species. Availability: The Tree Gibbs Sampler software is freely downloadable at https://compbio.iupui.edu/xiaomanli/LiSoftware/retrieve.php?ID=tgs Contact: shawnli@iupui.edu [ABSTRACT FROM AUTHOR]

Published
2007
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