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The threatened springsnail subgenus Alzoniella (Navarriella) in the Iberian Peninsula has been suggested to be an old and relict lineage of the family Hydrobiidae. The subgenus is represented by two morphological species, both endemic to the Pyrenees and their southern foothills. We conducted phylogenetic analyses based on mitochondrial and nuclear gene fragments of topotypes and other populations, four molecular species delimitation methods, and morphological examinations to clarify the uncertain systematic position of the subgenus within the family, assess its species diversity, and understand the population genetic structure of the two geographically restricted species. Our phylogenetic results revealed that Alzoniella (Navarriella) is distantly related to all other species of Alzoniella , even belonging to an independent subfamily-level clade, for which we introduce the new genus Navarriella and the new subfamily Navarriellinae subfam. nov. Molecular methods and geometric morphometric analysis of shell shape identified a single species in the new genus. The significant phylogenetic distance from other hydrobiid taxa, narrow distribution, and limited gene flow among its populations (estimated from mitochondrial cytochrome c oxidase subunit I sequences) highlight Navarriella as an isolated lineage within the family that requires urgent conservation attention. Furthermore, our results cast a new light on the northern Iberian Mountains as a dispersal barrier for ancient spring lineages. [ABSTRACT FROM AUTHOR]

We here present a comprehensive integrative taxonomic review of the genus Hylomys , using molecular (mitochondrial genomes and up to five nuclear loci) and morphological data from museum specimens across its distribution, resulting in the description of two new species and the elevation of three subspecies to specific status. This revision significantly increases the known diversity of Hylomys from two to seven extant species, challenging the traditional view of species-level diversity within gymnures. We discuss the implications of the taxonomic findings for conservation, particularly in relation to the restricted distribution ranges of several species that may be threatened by habitat loss and/or climate change. Our research emphasizes the importance of scientific collections and underscores the potential of museum genomics and additional field sampling to identify new species and improve our understanding of species diversity in poorly studied regions. Speciation events within Hylomys occurred during the Late Miocene and Early Pliocene, possibly driven by shifting climate conditions such as the strengthening of the Indian monsoon and the expansion of seasonally dry conditions. This study supports northern Sumatra and the southern Annamites as centres of localized endemicity and suggests the need for additional small mammal surveys across Sumatra's Barisan Range. [ABSTRACT FROM AUTHOR]

New Guinea is the largest tropical island in the world and hosts immense endemic biodiversity. However, our understanding of how the gradual emergence of the terrestrial ecosystems of the island over the last 40 Myr has generated this biological richness is hampered by poorly documented species diversity and distributions. Here, we address both these issues through an integrative taxonomy and biogeographical approach using Hylophorbus , a New Guinea-endemic genus of frogs with 12 recognized species. We delimited candidate species by integrating mitochondrial DNA, nuclear DNA, and bioacoustics, then investigated their evolutionary history. Our results suggest that the current taxonomy of the genus misses true species diversity by ≥3.5-fold. Nevertheless, most candidate species (27) remain unconfirmed because of missing data, whereas five were identified unambiguously as undescribed (we describe three of these formally). Time-calibrated phylogenetic analyses suggest that Hylophorbus diversification began ~9 Mya in the northern or eastern portion of New Guinea. It would appear that lineages dispersed to new terrestrial habitats in the west, notably uplifted by the central range orogeny, until eventually reaching the Bird's Head during the Mio-Pliocene (7–5 Mya). Conversely, a past barrier appears to have prevented north–south dispersal. These data suggest that new habitat availability has primarily driven the diversification of Hylophorbus. [ABSTRACT FROM AUTHOR]

To date, whether Bergmann's rule, initially developed for individual species or closely related taxa, can be applied to broader taxa remains elusive. Using global distribution data for birds, mammals, reptiles, and amphibians, both species- and assemblage-based, we examined the role of species richness and related climate variables in shaping body size patterns across the globe and the Northern Hemisphere only and whether the temperature–body size relationship had a phylogenetic signal. The results show that when species in all four classes were combined, body size increased with latitude but declined with temperature, consistent with Bergmann's rule. Each group showed somewhat unique patterns but was mostly consistent with Bergmann's rule. The body size–temperature relationships were not constrained by phylogenetic relatedness. Warmer places had both large and many small-bodied species, whereas cold places had proportionally more large species. The temperature-dependent variations in body size have important implications for macroecology under climate change. [ABSTRACT FROM AUTHOR]

The field of phylogenetics employs a variety of methods and techniques to study the evolution of life across the planet. Understanding evolutionary relationships is crucial to enriching our understanding of how genes and organisms have evolved throughout time and how they could possibly evolve in the future. Eucopia sculpticauda Faxon, 1893 is a deep-water peracarid in the order Lophogastrida Boas, 1883, which can often be found in high abundances in pelagic trawls. The species can be found along the Mariana Trench, in the Mid-Atlantic Ridge, west Atlantic and east Pacific Oceans, and in the Gulf of Mexico and as deep as 7526 m. Recent collections of E. sculpticauda in the Gulf of Mexico have revealed putative cryptic diversity within the species based on both molecular and morphological evidence. Previous studies have documented two different morphotypes of the telson: the terminal part of the pleon (abdomen) and part of the tail fan. In adults, the morphotypes can be distinguished by lateral constrictions in the telson. This evidence, combined with a previous barcoding study, led to the speculation that telson morphology may be a distinguishing character useful to define cryptic diversity within E. sculpticauda. This study presents additional molecular data from the mitochondrial genes cytochrome c oxidase subunit I, and the large ribosomal subunit (16S), and the nuclear histone 3 gene (H3) to investigate telson morphotypes in relation to evolutionary history within this species. Molecular data identified two strongly supported clades, lending support for potential cryptic diversification within the Gulf of Mexico. Investigations into telson morphology suggest that this character may be informative, but the morphotypes were sometimes ambiguous and additional characters could not be found that discriminate clades. At present, our data suggest early evidence for cryptic diversification within Gulf of Mexico populations, but additional morphological characters and geographic sampling are needed before a new species can be described. [ABSTRACT FROM AUTHOR]

Closely related and young species often show high morphological similarity, challenging their identification and correct assignment. Molecular markers and integrative approaches have contributed to solving many taxonomic uncertainties. In this study, we evaluated the genetic variability and ecological features of Petunia guarapuavensis and Petunia scheideana , over which there is a taxonomic debate. Both species are endemic and rare, distributed in the subtropical highland grasslands in southern South America. We based our analyses on nuclear microsatellite and plastid sequences, aiming to disentangle the taxonomic ambiguities that made some consider these entities synonymous despite occupying different clades in the genus phylogenetic tree. Our findings support that there is genetic differentiation between these species, suggesting that they are independent taxonomic entities despite sharing floral traits and a few molecular polymorphisms. The low genetic sharing between the species is likely due to a common ancestor and recent divergence time. In contrast, their morphological similarity can be attributed to the absence of selective pressure, as both grow under similar ecological conditions. This study emphasizes that adding more than one sequence per species, combining data with dissimilar inheritance patterns, and exploring data through different methodologies help to disentangle taxonomic incongruences and reveal diversity that might otherwise remain hidden. [ABSTRACT FROM AUTHOR]

The ecosystems within agro-pastoral transition zones exhibit inherent fragility and heightened susceptibility to climate variability, exacerbated by profound degradation resulting from anthropogenic activities. Subsequent vegetation degradation in these areas precipitates severe soil erosion, presenting formidable challenges for ecological restoration efforts. The utilization of microtopographic structures to mitigate soil erosion and facilitate vegetation recovery stands as a prominent strategy for vegetation restoration within agro-pastoral transition zones. Despite the acknowledgment in current restoration practices that the efficacy of microtopography-based restoration is contingent upon slope, aspect and elevation, there remains a notable absence of precise observed information on this correlation. This study, conducted in the Bashang Grassland, a typical agro-pastoral transition zone in northern China, aims to fill the information gap concerning the correspondence between microtopographic structures and restoration outcomes. Our findings revealed that microtopography has a significant impact on vegetation characteristics, with outcomes varying by location. Shaded slopes displayed higher biomass and density compared with sunny slopes and valleys. While microtopography affected community structure, it did not substantially alter species richness, highlighting the critical role of location and pit construction in successful restoration endeavors. This study provides insights for the selection, design and assessment of microtopography-based restoration in vulnerable ecosystems. [ABSTRACT FROM AUTHOR]

Direct sewage discharge may enhance soil nitrous oxide (N2O) emissions, worsening the greenhouse effect. However, the effects of sewage discharge into bogs on N2O flux, drivers and influencing mechanisms remain unclear. Additionally, investigating the impact of reclaimed water on N2O flux is important for bog replenishment and water shortage alleviation. This study simulated sewage from different sources into a bog and analyzed N2O fluxes, soil (organic carbon, total nitrogen, ammonium nitrogen, nitrate nitrogen, total phosphorus, available phosphorus, pH and electrical conductivity), plant (species richness and biomass) and microorganisms (ammonia-oxidizing archaea, napA , nirS , nirK and nosZ genes). Results showed that the reclaimed water did not significantly change N2O flux, while 50% tap water mixed with 50% domestic sewage and domestic sewage significantly increased the N2O flux. Among soil factors, available nitrogen and pH were key in influencing N2O flux. Among plant parameters, species richness was the primary factor affecting N2O flux. Nitrogen transformation functional genes contributed the most to the increase in the N2O fluxes, with an increase in domestic sewage input leading to a higher abundance of these genes and subsequent N2O emissions. Therefore, domestic sewage should be considered, as it significantly increases N2O emissions by affecting the soil, plants and microorganisms, thereby increasing the global warming potential. This study's findings suggest that using treated reclaimed water for bog replenishment could be an environmentally friendly approach to wetland management. [ABSTRACT FROM AUTHOR]

Gymnophthalmids are a diverse lineage of Neotropical lizards that present challenges in the understanding of their phylogenetic relationships and biogeographic history. Using a densely sampled phylogeny and distribution data, we investigated their biogeography at the family level. Dividing South and Central America into 12 regions, we tested six biogeographic models considering dispersal-extinction, vicariance, and founder events. Our analysis revealed high taxonomic and phylogenetic endemism in the Andes, Amazon, and Guiana Shield. The best-fit model identified the Guiana Shield as the likely ancestral area of the family, with dispersal events dominating over vicariance. Key areas for species interchange were the Amazon, Northern Andes, and Guiana Shield. The core regions of diversification included the Andes, Amazon, and Guiana Shield, with elevated species richness and biotic interchange events during the Eocene and Oligocene. The Guiana Shield stood out as a stronghold of gymnophthalmid diversity, driven by dispersal rates and ancient lineages. Our findings challenge previous hypotheses about the diversification of these lizards, suggesting a colonization pattern from lowlands to high elevations rather than the South-to-North Speciation Hypothesis for Andean lineages. [ABSTRACT FROM AUTHOR]

Flowers of Salvia are characterized by a diversity of staminal lever types mediating pollen transfer. In the East Asian subgenus Glutinaria, species have been categorized based on their distinct flower and stamen morphologies. A hypothesized advantage of degraded-lever types suggests they may optimize pollinator foraging time, increase visitation rates, and potentially trigger autonomous self-pollination. However, this hypothesis remains untested. Here, Salvia castanea, S. miltiorrhiza, and S. liguliloba were selected as test species representing the three major flower and stamen types of the East Asian sages. We compared the species with regard to their inflorescence architecture, floral display, nectar reward, pollinator efficiency, and seed set. We found that S. liguliloba had a degraded-lever type that significantly reduced pollinator foraging time did not significantly increase pollination efficiency. These species have a mixed mating pattern with high seed set, no pollen- or pollinator limitation, and no inbreeding depression. We conclude that the diversity of floral traits is addressed to pollinators, whereas reproductive success emerges from a complex interplay of factors encompassing floral characteristics, pollination efficiency, plant life history, or/and other biotic and abiotic factors. For this reason, the link between floral morphological traits and mating systems should not overestimated. [ABSTRACT FROM AUTHOR]

We conducted research on land snail diversity on the highest volcanic mountain in Java, Mt Semeru. This research aimed to gain data on the land snail species diversity in the area as well as analyse environmental variables that affect the land snail assemblages along the altitudinal gradients. A total of 40 plots of 10 × 10 m2 were examined in the altitudinal gradient of 800–1,200, 1,201–1,600, 1,601–2,000 and 2,001–2,400 m asl using a timed search method. In total, 788 individuals of land snails were collected, belonging to 22 species from 14 families. Fifteen species were new records for the area. Five endemic species were recorded on Mt Semeru. A single introduced species, Bradybaena similaris was found abundantly on the mountain at an altitude of more than 2,000 m asl. Multiple linear regression analyses showed a unimodal response of species richness for altitude, temperature and precipitation sums on Mt Semeru. In addition to these environmental variables, species richness is influenced by land use type and soil pH. These findings suggest that species and ecosystem management at the altitude 2,001–2,400 m asl is necessary to conserve endemic land snail species, which were found most abundantly at this altitude. [ABSTRACT FROM AUTHOR]

The rich genetic and phenotypic diversity of species complexes is best recognized through formal taxonomic naming, but one must first assess the evolutionary history of phylogeographic lineages to identify and delimit candidate taxa. Using genomic markers, mitochondrial DNA barcoding, and morphometric analyses, we examined lineage diversity and distribution in the Iberian endemic frog Rana parvipalmata. We confirmed two deep phylogeographic lineages, one relatively homogenous genetically, found in Asturias and adjacent areas (T2), and one more fragmented and locally genetically impoverished, restricted to Galicia (T1). Analyses of their hybrid zone suggested a shallow transition characterized by far-ranging admixture, which was modelled by a wide geographic cline (~60 km for the genome average) and no obvious barrier loci (i.e. loci showing disproportionally restricted introgression). The relatively young T1 and T2 have thus remained reproductively compatible, which argues against their distinction as biological species, and we accordingly describe T2 as a new subspecies, Rana parvipalmata asturiensis ssp. nov. Remarkably, we highlight striking discordances between mitochondrial and nuclear distributions across their hybrid zones, as well as between their genetic and morphological differentiation. Our study illustrates how genomic-based phylogeographic frameworks can help decipher the high genetic and phenotypic variation of species complexes and substantiate the taxonomic assessment of candidate lineages. [ABSTRACT FROM AUTHOR]

Background and Aims Latitudinal diversity gradients have been intimately linked to the tropical niche conservatism hypothesis, which posits that there has been a strong filter due to the challenges faced by ancestral tropical lineages to adapt to low temperatures and colonize extra-tropical regions. In liverworts, species richness is higher towards the tropics, but the centres of diversity of the basal lineages are distributed across extra-tropical regions, pointing to the colonization of tropical regions by phylogenetically clustered assemblages of species of temperate origin. Here, we test this hypothesis through analyses of the relationship between macroclimatic variation and phylogenetic diversity in Chinese liverworts. Methods Phylogenetic diversity metrics and their standardized effect sizes for liverworts in each of the 28 regional floras at the province level in China were related to latitude and six climate variables using regression analysis. We conducted variation partitioning analyses to determine the relative importance of each group of climatic variables. Key Results We find that the number of species decreases with latitude, whereas phylogenetic diversity shows the reverse pattern, and that phylogenetic diversity is more strongly correlated with temperature-related variables compared with precipitation-related variables. Conclusions We interpret the opposite patterns observed in phylogenetic diversity and species richness in terms of a more recent origin of tropical diversity coupled with higher extinctions in temperate regions. [ABSTRACT FROM AUTHOR]

The longhand rubble crab Ratha longimana inhabits coral reefs and rocky shores in the subtropical and tropical western Atlantic Ocean. This species was long considered to be the only chlorodielline species present in the area, but has since been transferred to the genus Ratha Lasley, Lai & Thoma, 2013 and is now thought to belong to an undescribed subfamily within Xanthidae MacLeay, 1838. Here we provide a complete mitochondrial assemblage and characterisation of this species. The assembled mitochondrial genome (hereafter mitogenome) of R. longimana is 15,819 bp in length and contains 13 protein coding genes (PCGs), 22 transfer RNA (tRNA) genes, and two ribosomal RNA (rRNA) genes. The 22 tRNA genes range from 62 to 69 bp in length. A mitochondrial gene order (MGO) analysis revealed a transposition of the tRNA genes Val (V) and 12S rRNA (rrnS) when compared to the ancestral brachyuran gene order, which is in line with earlier studies on xanthoid mitogenomes. Mitogenome data for xanthid crabs (as well as the superfamily Xanthoidea MacLeay, 1838) are currently scarce considering the species richness of the family, limiting the options for phylogenomic studies. This is partially remedied here by providing a new genomic resource for R. longimana. [ABSTRACT FROM AUTHOR]

Branchiopods use resting eggs to maintain permanent populations in temporally dynamic environments as well as for dispersing to neighboring habitat patches. We used a large-scale longitudinal salinity gradient that overlays the Nebraska Sandhills, USA to determine how changes in metacommunity environmental heterogeneity influences species composition and biodiversity of branchiopod egg banks from freshwater and saline temporary wetlands. We sampled the egg banks of 54 wetlands from three metacommunities across the Nebraska Sandhills (eastern, central, and western) in which the relative abundance and salinity of saline wetlands increased westwards. Salinity had a strong effect on structuring the egg-bank metacommunities with a clear shift in species composition and species richness from the eastern to western metacommunities. Egg-bank alpha richness of the freshwater wetlands and metacommunity gamma richness declined westwards as the abundance of freshwater wetlands decreased relative to the saline wetlands. The low-salinity wetlands represented an intermediate stage between the freshwater and high-salinity wetlands, overlapping in species composition with both habitat types and supporting similar numbers of species as freshwater wetlands. High-salinity wetlands had the lowest alpha richness with only halotolerant and halophilic species. [ABSTRACT FROM AUTHOR]

Climatic and geomorphological changes during the Quaternary period impacted global patterns of speciation and diversification across a wide range of taxa, but few studies have examined these effects on African riverine fish. The lower Congo River is an excellent natural laboratory for understanding complex speciation and population diversification processes, as it is hydrologically extremely dynamic and recognized as a continental hotspot of diversity harboring many narrowly endemic species. A previous study using genome-wide SNP data highlighted the importance of dynamic hydrological regimes to the diversification and speciation in lower Congo River cichlids. However, historical climate and hydrological changes (e.g. reduced river discharge during extended dry periods) have likely also influenced ichthyofaunal diversification processes in this system. The lower Congo River offers a unique opportunity to study climate-driven changes in river discharge, given the massive volume of water from the entire Congo basin flowing through this short stretch of the river. Here, we, for the first time, investigate the impacts of paleoclimatic factors on ichthyofaunal diversification in this system by inferring divergence times and modeling patterns of gene flow in four endemic lamprologine cichlids, including the blind cichlid, Lamprologus lethops. Our results suggest that Quaternary climate changes associated with river discharge fluctuations may have impacted the diversification of species along the system and the emergence of cryptophthalmic phenotype in some endemic species. Our study, using reduced representation sequencing (2RADseq), indicates that the lower Congo River lamprologines emerged during the Early-Middle Pleistocene transition, characterized as one of the earth's major climatic transformation periods. Modeling results suggest that gene flow across populations and between species was not constant but occurred in temporally constrained pulses. We show that these results correlate with glacial–interglacial fluctuations. The current hyper-diverse fish assemblages of the lower Congo River riverscape likely reflect the synergistic effects of multiple drivers fueling complex evolutionary processes through time. [ABSTRACT FROM AUTHOR]

The decrease in species richness toward higher latitudes is an expected biogeographical pattern. This pattern could be related to particular environmental constraints and the evolutionary history of clades. However, species richness does not fully represent the evolutionary history of the clades behind their distributions. Phylogenetic diversity better clarifies the role of historical factors in biogeographical patterns. We analyzed environmental and historical drivers related to latitudinal variation in species richness and phylogenetic diversity of Atlantic Forest endemic snakes. We implemented species distribution models, from voucher-based locality points, to map the snake ranges and diversity. We used generalized additive mixed models to evaluate the relationships among the diversity metrics and area, topographical roughness, and past climate change velocity since the Last Maximum Glacial in the Atlantic Forest latitudinal gradient. Contrary to the expected general pattern, species richness was higher toward higher latitudes, being positively related to past climatic stability. Species richness also increased with total area and higher topographical roughness. Phylogenetic diversity, on the other hand, showed opposite relationships related to the same factors. Phylogenetic diversity increased with lower climatic stability in lower latitudes. Thus, dimensions of diversity were affected in different ways by historical and environmental constraints in this unique and threatened biodiversity hotspot. [ABSTRACT FROM AUTHOR]

Based on molecular and morphological evidence, we describe a new species of murine rodent from Mt. Kampalili in easternmost Mindanao Island, Philippines. It is the third known species of Tarsomys , a genus endemic to Mindanao. The new species differs from congeners (T. apoensis and T. echinatus) in having smaller body size, shorter tail, smaller hind feet, soft and dense pelage of darker color, smaller skull with a broader zygomatic plate, shorter incisive foramina, and longer auditory bullae. The new species belongs to the " Tarsomys clade" of tribe Rattini that has diversified principally on Mindanao where, in addition to the 3 species of Tarsomys , it is represented by 2 species of Limnomys and 1 species of Baletemys. The Tarsomys clade also includes the Rattus everetti complex which is widespread throughout the oceanic portion of the Philippines and likely consists of at least 4 species. Molecular phylogenetic analysis strongly supports a sister relationship between this new species and T. apoensis , which diverged approximately 1.0 to 1.75 Ma. The phylogenetic position, morphological distinctness, and relatively ancient persistence of this species support within-island diversification as the most substantial contributor to existing species richness of small mammals in the Philippines. [ABSTRACT FROM AUTHOR]

Ecosystem engineers modify their environment and influence the availability of resources for other organisms. Burrowing species, a subset of allogenic engineers, are gaining recognition as ecological facilitators. Burrows created by these species provide habitat for a diverse array of other organisms. Following disturbances, burrows could also serve as ecological refuges, thereby enhancing ecological resistance to disturbance events. We explored the ecological role of Common Wombat (Vombatus ursinus) burrows using camera traps in forests of southeastern Australia. We compared animal activity at paired sites with and without burrows, from the same fire severity class and habitat. We examined how animal activity at Common Wombat burrows was affected by the 2019–20 Black Summer bushfires in Australia. We predicted that burrows would serve as hotspots for animal activity and as refuges in burned areas. The activity of several species including Bush Rat (Rattus fuscipes), Agile Antechinus (Antechinus agilis), Lace Monitor (Varanus varius), Painted Button-quail (Turnix varius), and Grey Shrike-thrush (Colluricincla harmonica) increased at sites where Common Wombat burrows were present, while other species avoided burrows. Species that were more active at burrows tended to be smaller mammal and bird species that are vulnerable to predation, whereas species that avoided burrows tended to be larger mammals that might compete with Common Wombat for resources. Species composition differed between sites with and without burrows, and burrow sites had higher native mammal species richness. The association of several species with burrows persisted or strengthened in areas that burned during the 2019–20 Black Summer bushfires, suggesting that Common Wombat burrows may act as ecological refuges for animals following severe wildfire. Our findings have relevance for understanding how animals survive, persist, and recover following extreme wildfire events. [ABSTRACT FROM AUTHOR]

Drought is a major stressor to soil microbial communities, and the intensification of climate change is predicted to increase hydric stress worldwide in the coming decades. As a possible mitigating factor for the consequences of prolonged drought periods, above and belowground biodiversity can increase ecosystem resistance and resilience by improving metabolic redundancy and complementarity as biodiversity increases. Here, we investigated the interaction effect between plant richness and successive, simulated summer drought on soil microbial communities during a period of 9 years.To do that, we made use of a well-established biodiversity experiment (The Jena Experiment) to investigate the response of microbial richness and community composition to successive drought periods alongside a plant richness gradient, which covers 1-, 2-, 4-, 8-, 16-, and 60-species plant communities. Plots were covered from natural precipitation by installing rain shelters 6 weeks every summer. Bulk soil samples were collected 1 year after the last summer drought was simulated. Our data indicate that bacterial richness increased after successive exposure to drought, with the increase being stable along the plant richness gradient. We identified a significant effect of plant species richness on the soil microbial community composition and determined the taxa significantly impacted by drought at each plant richness level. Our data successfully demonstrates that summer drought might have a legacy effect on soil bacterial communities. [ABSTRACT FROM AUTHOR]

Background and Aims The deceptive strategies by which orchids are pollinated and how these are capable of attracting pollinators remain understudied with regard to their implications for plant fitness. Despite their ecological importance, limited investigations have been conducted on sexual deception and shelter mimicry in orchid species, making this a compelling avenue in orchid biology research. To expand the knowledge of these reproductive mechanisms, we studied the pollination of Serapias lingua and S. parviflora in co-occurring and isolated sites in the Balearic Islands (Spain), further accentuated by the presence of a hybrid, indicating shared pollinators. Methods We employed bagging and hand pollination experiments to examine the reproductive biology of the two species. Furthermore, we evaluated the influence of phenotypical and ecological factors on reproductive success, including biometric measurements, reproductive performance and neighbourhood diversity (co-flowering and pollinator communities). Key Results Reproductive mechanisms between these two orchid species exhibit substantial disparities. Serapias lingua relies primarily on insect-mediated pollination, while S. parviflora demonstrates self-reproduction capacity. Although events of open pollination are rare, hybridization occurs predominantly when S. lingua is the pollen donor. Fruit set in S. parviflora was positively correlated with plant height, while in S. lingua it was negatively associated with flower size. The coexistence of the two species positively affected pollinium removal in S. parviflora , but did not exert an influence on reproductive traits in S. lingua. Overall, biometric parameters were diminished in isolated compared with co-occurring sites. At the community level, the increased diversity of co-flowering species in the vicinity exhibited an inhibitory effect on pollinium removal in S. parviflora. Conclusions Under a context of pollinator loss or phenological mismatch between pollinator presence and flowering, the selfing capacity of S. parviflora would guarantee reproduction whereas S. lingua survival would be compromised. Furthers studies are needed to assess the effects of phenotypical and ecological factors on reproductive success of S. lingua in pollinator-decline scenarios. [ABSTRACT FROM AUTHOR]

Drought can greatly impact the biodiversity of an ecosystem and play a crucial role in regulating its functioning. However, the specific mechanisms by which drought mediate the biodiversity effect (BE) on community biomass in above- and belowground through functional traits remain poorly understood. Here, we conducted a common garden experiment in a greenhouse, which included two plant species richness levels and two water addition levels, to analyze the effects of biodiversity on aboveground biomass (AGB), belowground biomass (BGB) and total biomass (TB), and to quantify the relationship between BEs and functional traits under drought conditions. Our analysis focused on partitioning BEs into above- and belowground complementarity effect (CE) and selection effect (SE) at the species level, which allowed us to better understand the impacts of biodiversity on community biomass and the underlying mechanisms. Our results showed that plant species richness stimulated AGB, BGB and TB through CEs. Drought decreased AGB, BGB and TB, simultaneously. In addition, the aboveground CE was positively associated with the variation in plant height. SEs in above- and belowground were negatively correlated with the community mean plant height and root length, respectively. Furthermore, drought weakened the aboveground CE by decreasing variation in plant height, resulting in a reduction in AGB and TB. Our findings demonstrate that the complementarity of species is an important regulator of community biomass in above- and belowground, the dynamics of biomass under environmental stress are associated with the response of sensitive compartments. [ABSTRACT FROM AUTHOR]

Venom systems are complex traits that have independently emerged multiple times in diverse plant and animal phyla. Within each venomous lineage there typically exists interspecific variation in venom composition where several factors have been proposed as drivers of variation, including phylogeny and diet. Understanding these factors is of broad biological interest and has implications for the development of antivenom therapies and venom-based drug discovery. Because of their high species richness and the presence of several major evolutionary prey shifts, venomous marine cone snails (genus Conus) provide an ideal system to investigate drivers of interspecific venom variation. Here, by analyzing the venom gland expression profiles of ∼3,000 toxin genes from 42 species of cone snail, we elucidate the role of prey-specific selection pressures in shaping venom variation. By analyzing overall venom composition and individual toxin structures, we demonstrate that the shifts from vermivory to piscivory in Conus are complemented by distinct changes in venom composition independent of phylogeny. In vivo injections of venom from piscivorous cone snails in fish further showed a higher potency compared with venom of nonpiscivores demonstrating a selective advantage. Together, our findings provide compelling evidence for the role of prey shifts in directing the venom composition of cone snails and expand our understanding of the mechanisms of venom variation and diversification. [ABSTRACT FROM AUTHOR]

Emerald ash borer (EAB) (Agrilus planipennis Fairmaire) (Coleoptera: Buprestidae) is the most destructive insect to invade North American forests. Identifying habitat features that support EAB natural enemies is necessary to enhance EAB biological control. In many forest ecosystems, tree species diversity has been linked with reduced pest abundance and increases in natural enemy abundance. We assessed the influence of tree species richness, ash density, and proportion of total ash basal area on ash canopy condition, EAB larval densities, and biocontrol by woodpeckers and parasitoids in pairs of healthy and declining overstory (DBH > 10 cm) and recruit-sized ash (DBH 2–10 cm) in 4 post-invasion forests in Michigan, USA. Tree species richness and ash density were not significantly associated with EAB larval densities, ash canopy dieback and transparency, and woodpecker predation of EAB larvae. In declining and healthy overstory ash, woodpeckers killed 38.5 ± 3.9% and 13.2 ± 3.7% of larvae, respectively, while the native parasitoid Phasgonophora sulcata Westwood killed 15.8 ± 3.8% and 8.3 ± 3.0% and the introduced parasitoid Spathius galinae Belokobylskij & Strazanac killed 10.8 ± 2.5% and 5.0 ± 2.6% of EAB larvae. Parasitism by P. sulcata was inversely related to ash density while parasitism by S. galinae was positively associated with ash density. Ash density, but not tree diversity, appears to differentially influence biological control of EAB by parasitoids, but this effect is not associated with reduced EAB densities or improved canopy condition. [ABSTRACT FROM AUTHOR]

Crop pollination and natural biological control provided by beneficial insects have an economic worth of hundreds of billions of dollars annually. Apple and peach production in North Georgia are economically important industries that benefit from these ecological services. Hover flies are dual ecosystem service providers that have been relatively understudied in orchard ecosystems. We investigated the diversity and seasonal activity of hover flies in apple and peach orchards at 2 sites in North Georgia from March to October 2020 and 2021. Bowl traps were used to sample hover flies in orchard edge and interior habitats. The aphidophagous species Toxomerus geminatus (Say) (Diptera: Syrphidae) and Toxomerus marginatus (Say) (Diptera: Syrphidae) comprised 86.6% of the total hover flies collected. Apple orchards yielded the greatest hover fly presence, species richness, and Toxomerus spp. abundance. Hover fly richness and diversity were greatest during postbloom, but Toxomerus spp. abundance was greatest during the bloom period. No differences in presence, richness, diversity, or Toxomerus spp. abundance were found between edge and interior habitats. Toxomerus geminatus and T. marginatus were dominant from March through August, with T. geminatus being more abundant than T. marginatus in March, early April, and August. October sampling produced the greatest hover fly richness. Our results suggest that hover flies are abundant in North Georgia orchards and exhibit substantial spatial and temporal variation in richness and diversity. Expanded studies incorporating additional sampling efforts and methods are needed to further characterize the hover fly fauna and their impact on North Georgia apple and peach orchards. [ABSTRACT FROM AUTHOR]

Background Bacterial vaginosis (BV) is a condition marked by high vaginal bacterial diversity. Gardnerella vaginalis has been implicated in BV but is also detected in healthy women. The Gardnerella genus has been expanded to encompass 6 validly named species and several genomospecies. We hypothesized that particular Gardnerella species may be more associated with BV. Methods Quantitative polymerase chain reaction (PCR) assays were developed targeting the cpn60 gene of species groups including G. vaginalis , G. piotii/pickettii, G. swidsinskii/greenwoodii, and G. leopoldii. These assays were applied to vaginal swabs from individuals with (n = 101) and without BV (n = 150) attending a sexual health clinic in Seattle, Washington. Weekly swabs were collected from 42 participants for up to 12 weeks. Results Concentrations and prevalence of each Gardnerella species group were significantly higher in participants with BV; 91.1% of BV-positive participants had 3 or more Gardnerella species groups detected compared to 32.0% of BV-negative participants (P <.0001). BV-negative participants with 3 or more species groups detected were more likely to develop BV within 100 days versus those with fewer (60.5% vs 3.7%, P <.0001). Conclusions These results suggest that BV reflects a state of high Gardnerella species diversity. No Gardnerella species group was a specific marker for BV. [ABSTRACT FROM AUTHOR]

Abstract.— Phylogenomics allows us to uncover the historical signal of evolutionary processes through time and estimate phylogenetic networks accounting for these signals. Insight from genome-wide data further allows us to pinpoint the contributions to phylogenetic signal from hybridization, introgression, and ancestral polymorphism across the genome. Here, we focus on how these processes have contributed to phylogenetic discordance among rattlesnakes (genera Crotalus and Sistrurus), a group for which there are numerous conflicting phylogenetic hypotheses based on a diverse array of molecular datasets and analytical methods. We address the instability of the rattlesnake phylogeny using genomic data generated from transcriptomes sampled from nearly all known species. These genomic data, analyzed with coalescent and network-based approaches, reveal numerous instances of rapid speciation where individual gene trees conflict with the species tree. Moreover, the evolutionary history of rattlesnakes is dominated by incomplete speciation and frequent hybridization, both of which have likely influenced past interpretations of phylogeny. We present a new framework in which the evolutionary relationships of this group can only be understood in light of genome-wide data and network-based analytical methods. Our data suggest that network radiations, like those seen within the rattlesnakes, can only be understood in a phylogenomic context, necessitating similar approaches in our attempts to understand evolutionary history in other rapidly radiating species. [ABSTRACT FROM AUTHOR]

The subfamily Molytinae (Coleoptera: Curculionidae), being the second largest group within the family Curculionidae, exhibits a diverse range of hosts and poses a serious threat to agricultural and forestry industries. We used 1,290 cytochrome c oxidase subunit I (COI) barcodes to assess the efficiency of COI barcodes in species differentiation and uncover cryptic species diversity within weevils of Molytinae. The average Kimura 2-parameter distances within species, genus, and subfamily were 2.90%, 11.0%, and 22.26%, respectively, indicating significant genetic differentiation at both levels. Moreover, there exists a considerable degree of overlap between intraspecific (0%–27.50%) and interspecific genetic distances (GDs; 0%–39.30%). The application of Automatic barcode gap discovery, Assemble Species by Automatic Partitioning, Barcode Index Number, Poisson Tree Processes (PTP), Bayesian Poisson Tree Processes (bPTP), and jMOTU resulted in the identification of 279, 275, 494, 322, 320, and 279 molecular operational taxonomic units, respectively. The integration of 6 methods successfully delimited species of Molytinae in 86.6% of all examined morphospecies, surpassing a threshold value of 3% GD (73.0%). A total of 28 morphospecies exhibiting significant intraspecific divergences were assigned to multiple MOTUs, respectively, suggesting the presence of cryptic diversity or population divergence. The identification of cryptic species within certain morphological species in this study necessitates further investigation through comprehensive taxonomic practices in the future. [ABSTRACT FROM AUTHOR]

The Canary Islands is a Macaronesian volcanic archipelago with a depauperate community of three species of Kalotermitidae, including Kalotermes dispar. A total of 54 Kalotermes colonies were collected from Gran Canaria, Tenerife, La Gomera, La Palma, and El Hierro islands. Soldiers and imagos were morphologically examined and sequenced for four mitochondrial markers. Although morphological differences could not be detected, phylogenetic analysis of both cox1 / tRNA / cox2 and rrnL markers revealed two distinct clades of K. dispar , suggesting cryptic diversity. The diversification within the Canary Kalotermes lineage most likely occurred around 7.5 Mya, while the divergence within the two clades was reconstructed at about 3.6 Mya and 1.9 Mya. Kalotermes approximatus from the southeastern Nearctic constitutes a sister to the Canary Kalotermes , while the Palearctic K. flavicollis , K. italicus , and K. phoenicae form a separate clade. It is hypothesized that a faunal exchange of Kalotermes from the Nearctic to the Canary Islands occurred via transoceanic rafting during the mid-Miocene. [ABSTRACT FROM AUTHOR]

Summary Mitochondrial DNA sequences are used extensively in phylogeographic and phylogenetic studies for a wide range of organisms. With the advent of low-cost, high-throughput "next generation" DNA sequencing, and user-friendly bioinformatics pipelines for generating and annotating whole mitochondrial genome assemblies, the analysis of whole mitochondrial genomes has become an important component of phylogenomic studies for taxa with high species diversity but limited coverage for other genomic resources. An important step in characterizing de novo mitochondrial genome assemblies is to evaluate and describe structural rearrangements relative to reference taxa. Accessible tools are needed to help visualize gene and non-coding feature complement, their order, and strand orientation. However, there are few dedicated applications that generate high-quality genome diagrams. Here we present circularMT and circularMT-console that allow users to create highly customizable, publication-quality images, of linear and circular mitochondrial genome maps, either individually or integrated into an analysis pipeline. Availability and implementation Both applications are implemented in C#, with binaries, source code, and user guides available on GitHub (https://github.com/msjimc/circularMT). An archive of the published version is available on Zenodo (https://zenodo.org/records/10912319). [ABSTRACT FROM AUTHOR]

Biocrusts determine soil stability and resiliency, with a special role played by oxygenic photoautotrophic microorganisms in these communities. We evaluated temporal and geographic trends in studies focused on these microorganisms in biocrusts. Two databases were surveyed to obtain scientific articles published from 1998 to 2020 containing the terms 'biocrusts,' 'algae,' and 'cyanobacteria.' Although interest in biocrusts has increased recently, their ecological importance is still little explored. The scientific articles that mentioned a species list of cyanobacteria and/or algae revealed a very heterogeneous geographic distribution of research. Biocrusts have not been explored in many regions and knowledge in the tropics, where these communities showed high species richness, is limited. Geographic gaps were detected and more detailed studies are needed, mainly where biocrust communities are threatened by anthropogenic impacts. Aiming to address these knowledge gaps, we assembled a taxonomic list of all algae and cyanobacteria found in these articles, including information on their occurrence and ecology. This review is an updated global taxonomic survey of biocrusts, which importantly reveals their high species richness of oxygenic photoautotrophic microorganisms. We believe this database will be useful to future research by providing valuable taxonomic and biogeographic information regarding algae and cyanobacteria in biocrusts. [ABSTRACT FROM AUTHOR]

Zieria buxijugum , Z. formosa , and Z. parrisiae are three closely related, Critically Endangered species of questionable taxonomic validity that occur within six kilometres of each other on the south coast of New South Wales, Australia. We investigated genetic relationships and diversity of these species, along with two related but taxonomically distinct congeners, Z. granulata and Z. tuberculata , and a possible undescribed taxon, Z. aff. tuberculata. Double-digest restriction-site associated sequencing (ddRADseq) was used to generate anonymous genomic loci that were used for phylogenetic, network, and genetic structure analyses, and for estimating genetic diversity of the threatened species. Our results support the current taxonomic status of Z. buxijugum , Z. formosa , and Z. parrisiae , and suggest that Z. aff. tuberculata warrants recognition as a distinct species. We detected no evidence of inbreeding in the three Critically Endangered species, and found their genetic diversity to be similar to that of the more widespread species Z. granulata and Z. tuberculata. Comparison of plant material held in ex situ collections at the Australian National Botanic Gardens with wild plants highlighted several genotypes of the Critically Endangered species that are not represented in the ex situ collection, and we provide suggestions for the future inclusion of those unrepresented genotypes. [ABSTRACT FROM AUTHOR]

The flowers of Peperomia (Piperaceae) are simple, minute, and unique structures within the angiosperms consisting of a rounded bract, two stamens and an ovary, but generally lack taxonomic value at species level. Because of this, morphological characters of vegetative parts have been mainly used for species level taxonomy. There is a need to supplement these vegetative characters with anatomical characters. We selected 17 native Thai species representatives of South East Asian Peperomia to investigate the utility of vegetative anatomical characters for species delimitation, taxon identification, and classification. Stem, petiole, and leaf anatomical characters were studied using standard microscopic techniques. The anatomical characters demonstrated high diversity and supported species identification. Unweighted Pair Group Method with Arithmetic Mean (UPGMA) culstering, Principal Coordinates analysis (PCoA), and Principal Component Anaysis (PCA) were used to investigate patterns in the multivariate anatomical data and identify groupings of value to species classification. Four broad groupings were retrieved and some subgroupings identified. The most important characters that differentiated the species in the multivariate analysis included stem shape (roundness and ridges), petiole indumentum and trichome type, vascular bundle pattern and number, stem pith cavity, mucilage canals, and stem cortex sclerenchyma. These data were further used to prepare anatomical descriptions at generic and species levels and to provide a key to species. [ABSTRACT FROM AUTHOR]

Large-scale databases are crucial for macroecology research, yet not entirely bias-free. Studying the biogeography of metazoan microfauna utilizing such databases is challenging, and added biases can further hinder them. Incidence data of tardigrade species from Central and South America are geographically biased, comprising mostly species erroneously considered cosmopolitan. The impact of these biases on macroecological studies is still unknown. This paper evaluates how biased distribution records affect understanding of non-marine tardigrade distribution patterns in the Neotropical region. Using two datasets (including and excluding dubious records of allegedly cosmopolitan species), we assess how well biogeographic regions are sampled, estimate tardigrade species' richness, and analyse whether including dubious records can alter our comprehension of their macroecology. We demonstrate how biogeographic regions are still not fully sampled, and that including unreliable records influences how many species remain to be discovered. Since records of 'false cosmopolitan species' represent most records, their removal increases uncertainty while yielding distribution patterns more likely to be accurate. Disregarding untrustworthy distribution records of 'false cosmopolitan species' is the first step to better understanding tardigrade macroecology in the Neotropics, and probably worldwide. However, additional, preferably systematic sampling is required before we can infer general tardigrade biodiversity patterns in under-sampled regions. [ABSTRACT FROM AUTHOR]

Hypostomus is the most species-rich genus within the family Loricariidae and is widely distributed throughout the Neotropical region. Nonetheless, the diversity and distribution of these species have still large knowledge gaps. This scenario is more significant in some regions, such as the northeast of Brazil. In this region, the first species of the genus, H. pusarum , was described in the Northeast Caatinga and Costal Drainages ecoregion. Six congeners were subsequently described in the same ecoregion, all sharing the same colour pattern making them difficult to distinguish. All of them are collectively referred to as the H. pusarum complex. The present work seeks to clarify the diversity that constitutes the H. pusarum complex through an integrative study using molecular and morphological data. The results indicate that H. carvalhoi , H. jaguribensis , H. nudiventris , H. papariae , and H. salgadae are all junior synonyms of H. pusarum. However, one of the morphotypes that occurs in the Parnaíba River is a new species that differs from the others by the absence of a developed medial buccal papilla and the presence of a pre-anal plate. The data provided here highlight the importance of integrative taxonomy for assessing diversity in complex and diverse groups in the Neotropics. [ABSTRACT FROM AUTHOR]

Current knowledge of the global diversity of schizophoran flies, the megadiverse group that evolved during the episode of rapid dipteran radiations in the Early Cenozoic, is far from satisfactory. A significant part of this radiation is flesh flies (Sarcophagidae), which include about 3000 known species. Miltogramma Meigen, the largest genus of the flesh fly subfamily Miltogramminae, includes 119 known species with a peak of diversity in the Middle East and Central Asia. The taxonomy of the genus is acknowledged to be challenging, partly due to logistical issues associated with the deposition of type specimens in less accessible Russian institutions. Six new distinctive species of Miltogramma collected during recent expeditions to Iran and Uzbekistan are described using methods of integrative taxonomy: Miltogramma manouchehrii Szpila & Pape, sp. nov. , M. mikolajczyki Szpila & Pape, sp. nov. , M. rognesi Szpila & Pape, sp. nov. , M. soszynskii Szpila & Pape, sp. nov. , M. thompsoni Szpila & Pape, sp. nov. , and M. vervesi Szpila & Pape, sp. nov. Flies are characterized by secondary sexual dimorphism expressed in the form of species-specific chaetotaxy of the male fore tarsus, a character related to courtship behaviour. The reconnaissance surveys to both of the mentioned countries performed in the last decade brought information about a large number of potential new species of Miltogramma , despite the taxonomic work performed in this area in the past. Describing the majority of them requires extensive revisionary work, which involves accessing the type specimens and applying modern methods of species delimitation. [ABSTRACT FROM AUTHOR]

Mesoraphidiidae is an extinct family of the order Raphidioptera with an evolutionary history that is largely unexplored. Here, we uncovered the evolutionary history of Mesoraphidiidae using phylogenetic comparative approaches, based on an updated morphological dataset, with an additional description of two new genera and species with distinct cephalic elongation, Dracoraphidia brachystigma gen. et sp. nov. and Teratocephala macrostigma gen. et sp. nov. from mid-Cretaceous Myanmar amber. Phylogenetic analysis shows their affinity to the subfamily Alloraphidiinae. Our results show that the radiation of species diversity and morphological disparity of Mesoraphidiidae dates back to the Lower Cretaceous and experienced a distinct peak approximately 130–118 million years ago (Ma). This timeframe aligns with the Cretaceous Terrestrial Revolution (KTR), a period from 125 to 80 Ma marked by the proliferation of flowering plants and their interactions with insects. The habitat preference of mesoraphidiid larvae to gymnosperm plants might have led to their extinction during the KTR, with the associated decline of gymnosperm diversity. Despite reduction in the occupation of morphospace by Mesoraphidiinae, there is surprising expansion of morphospace occupation by Alloraphidiinae in the Upper Cretaceous, possibly related to cephalic elongation, which may have enhanced pollen-feeding or predation ability, in response to extrinsic changes to biodiversity and ecosystems during the KTR. This study enriches our understanding of the macroevolution of snakeflies during the Mesozoic and provides new evidence for the impact of the KTR on insects. [ABSTRACT FROM AUTHOR]

The genus Ctenomys (Rodentia: Hystricomorpha) includes an impressive diversity of species, all of which have evolved in southern South America. The number of recognized species is currently approaching 70. During the last few decades, taxonomic revisions and new field collections have resulted in both the description of new species and the synonymization of others, suggesting that much of the alpha taxonomy of Ctenomys remains unresolved, particularly when considering the vast areas of distribution that are still unsampled. Both phylogeographic patterns and the fossil record suggest that the Andean Cordillera has played a critical role in the diversification of the genus. Building upon recent, intensive field sampling in the Andean and pre-Andean regions of southern Mendoza Province, I integrated molecular and morphological data to evaluate the taxonomic status of populations of Ctenomys in this region. These analyses revealed a taxonomically-diverse Ctenomys assemblage within which here I provide the description for a new species. Available data indicate that this new species is endemic to southern portions of Mendoza Province, a geographic region that represents the confluence of 3 lineages ' magellanicus ,' ' maulinus ,' and ' mendocinus ,' and that it is thus an area of particular importance for the conservation of these rodents. [ABSTRACT FROM AUTHOR]

Several issues regarding the systematics and taxonomy of the Neotropical deer tribe Odocoileini, an assemblage of 18 recognized living species currently allocated into 7 genera, remain unclear. The few available phylogenetic analyses indicate that some genera are not monophyletic and that species richness in the group is underestimated. One genus that presents both problems are the stocky and short-legged dwarf deer, Pudu. As currently understood, it includes 2 species, the Northern pudu, Pudu mephistophiles from Peru, Ecuador, and Colombia; and the Southern pudu, P. puda , from southern Chile and nearby Argentina. Here, by means of qualitative and quantitative morphologic analysis and the assessment of genetic variation, we showed that 2 distinct species are encompassed by the current concept of P. mephistophiles. The typical form distributes north of the Huancabamba Depression from northernmost Peru to the north (Ecuador and Colombia), while the other distributes south of the Huancabamba Depression and is a Peruvian endemic. As no name is available for the last one, we describe and name it here. This is the first living cervid species described in the 21st century and the first from the New World in over 60 years. Additionally, as the Southern Pudu (the type species of Pudu) is not sister to the 2 northern pudu species, we revalidate the genus Pudella to allocate the latter 2 species. [ABSTRACT FROM AUTHOR]

Increasing coastal development and global warming have resulted in large-scale habitat changes, with artificial coastal structures replacing extensive tracts of natural shores. In Singapore, for example, more than 63% of the natural coastline has been replaced by seawalls. Multiple studies from both temperate and tropical regions have compared species diversity supported by these artificial structures with natural rocky shores. Few, however, have estimated and compared the population size and movement of common intertidal species between these two habitat types. Using mark–recapture techniques, this study investigated: (1) the population size of three common gastropod genera (Nerita spp. Trochus spp. and Turbo spp.) and (2) differences in displacement of Nerita spp. and Trochus spp. two common species found on natural rocky shores and seawalls in Singapore. The results of our mark–recapture surveys indicated that seawalls supported large densities of Nerita spp.—more than 50 times greater than that on adjacent rocky shores. The mark–recapture data also revealed that movement of the gastropod species differed between the two habitats, with individuals on seawalls generally travelling longer distances. [ABSTRACT FROM AUTHOR]

Macroevolutionary analyses can identify patterns associated with the origin and diversification of species. Here, we gathered currently available genetic and morphological information to explore the diversification dynamics in a highly diverse family of squamate lizards, Gymnophthalmidae. We downloaded the available GenBank data for four genetic markers (12S, 16S, ND4 , and c-mos) and generated a dated phylogenetic hypothesis to use as an operational framework. Using our time-calibrated tree, we conducted a Bayesian analysis of macroevolutionary mixtures (BAMM) to explore macroevolutionary patterns for both speciation and phenotypic evolution. For the latter, we included two morphological traits: body size and leg development. We recovered six major clades commonly referred to as subfamilies, whose common ancestor was recovered between 78.15 and 81.68 Myr. Additionally, we found that the major accumulation of extant lineages occurred during the Miocene. Overall, all the evolutionary rates tended to be low, with particular clades exhibiting higher rates and different but not congruent points of acceleration along the tree. These findings indicate that speciation and phenotypic evolution in this lizard group are heterogenic and decoupled, but several pulses of diversification have occurred. Geographically, we found older lineages to be concentrated in the Amazon and the Guiana Shield, whereas higher speciation rates are found in the tropical Andes and its adjacent lowlands. [ABSTRACT FROM AUTHOR]

The Pleistocene was characterized by climate fluctuations with rapid transitions between glacial and interglacial periods. East Asia's land bridge dynamics and monsoon system during the Middle Pleistocene transition (MPT) further constrained species distributions and dispersals, which promoted local adaptation and species diversification, making East Asia an excellent location to study species biogeography. Cypripedium macranthos Sw. a terrestrial orchid, diverged in the Pleistocene and became widespread in Russia, China, Korea, and Japan. Many populations are now at risk due to illegal harvesting or habitat loss. With comprehensive sampling including 171 individuals among 22 populations across the entire distribution range, together with plastid DNA sequencing, we have explored the origin and impact of palaeoclimate on its spatial genetic structure and historical biogeography. Regression-based analyses commonly used in landscape genetics were also applied to investigate the effects of precipitation, temperature, and wind on gene flow. The results revealed northeastern China as the probable cradle of C. macranthos , with northeastward divergence and range expansion during the MPT, aided by monsoon shifts and wind-driven seed dispersal. Isolation by environment was detected with winter temperature as a driver for north–south divergence controlling for an effect of isolation by distance, revealing cold adaptation of the northern populations or temperature-driven genetic differentiation. We also emphasize the founder speciation of an unique variety on Rebun Island of Japan. The widespread but genetically and ecologically divergent C. macranthos populations highlight the need for more conservation attention on northern populations under global warming. [ABSTRACT FROM AUTHOR]

Extreme drought and insect herbivores can affect plant community non-independently, and their interaction may be influenced by drought pattern. However, few studies have explored the interaction on plant community structure, and no study has investigated whether the interaction is affected by drought pattern. We explored the interaction of different extreme drought patterns and insect herbivores with a manipulated experiment in a semiarid grassland. There were three treatments for drought: control—ambient precipitation; chronic drought—66% precipitation reduction in the growing season (May–August); intense drought—completely exclusion of rain events from June to July. Herbivores removal and present treatments were imposed within each drought treatment. We found that although herbivores had no significant effects on the impacts of droughts on total species richness, it alleviated the impacts of chronic drought on total cover, and the alleviating role decreased under intense drought. Comparing with intense drought, more increasing of grass cover led to more alleviation under chronic drought associated with the decrease of forb which has low leaf carbon and dry matter content, along with high starch, calcium, magnesium and manganese concentration. These results indicate that the interaction of drought and herbivores is affected by drought pattern, and the changes in leaf traits that reduce herbivores feeding in grass might alleviate the impact of drought on grassland. [ABSTRACT FROM AUTHOR]

Asymmetric seasonal warming, characterized by more pronounced temperature increases in winter than in summer, has become a critical feature of global warming, especially in cold and high-altitude regions. Previous studies have primarily focused on year-round warming, while comparatively less attention was paid to winter warming. However, a significant knowledge gap exists regarding the impacts of winter warming on ecosystem functions. To address this, we conducted an 8-year manipulated warming experiment in an alpine grassland on the Tibetan Plateau, employing three treatments: no warming, year-round warming and winter warming. We found that neither year-round warming nor winter warming significantly alters species richness at the community level. Notably, community biomass stability was maintained via species asynchrony. However, warming exerted significant effects on the plant abundance groups (dominant, common and rare species). Specifically, winter warming enhanced the stability of dominant species by increasing species asynchrony of dominant species, as the compensatory dynamics occurred between the grass and forbs. In contrast, year-round warming reduced the stability of common species, correlated with an increase in species richness and a decline in asynchrony among common species. Thus, our study underscores the capacity of alpine grassland to maintain community biomass stability via asynchrony dynamics of species under different warming conditions, although the stability of different abundance groups would be changed. Importantly, our results provide valuable insights for understanding the alpine grassland ecosystem on the Tibetan Plateau. [ABSTRACT FROM AUTHOR]

Genetic diversity within a species can be shaped by abiotic factors, such as climate and geography. We aimed to ascertain the relative importance of these two abiotic factors to Indrella ampulla , a monotypic snail species from the Western Ghats, India, that has three colour morphs with some overlapping distributions. We also wanted to investigate whether these colour morphs represent divergent lineages or incipient species. We sequenced one nuclear and two mitochondrial genes from 32 individuals of I. ampulla. We used phylogenetic, population genetic, and niche modelling tools to address these questions. The results suggested that the colour morphs were not reciprocally monophyletic and exhibited considerable niche overlap, suggesting that they cannot be considered as incipient species. Furthermore, the results showed that the impact of palaeoclimatic oscillations in shaping the genetic diversity of this species cannot be determined conclusively. The Palghat Gap seems to have shaped the genetic diversity in this group to a certain degree. The colour morph distributed south of the Palghat Gap did not show admixture and exhibited the least amount of niche overlap with the other morphs. The geography of the landscape seems to have played a prominent role in shaping genetic diversity in this species. [ABSTRACT FROM AUTHOR]

Dispersal is one of the major processes controlling both genetic diversity and species diversity and is frequently studied in both phylogeography and community ecology. As such, integrating these fields to uncover how both historical and contemporary dispersal have affected local community structure can provide greater insights into community assembly. We used comparative phylogeography to determine if freshwater fish species in the Bonneville Basin show evidence of geologically recent dispersal and gene flow, which would probably have occurred when the basin was inundated by Lake Bonneville in the late Pleistocene. We then used museum records to uncover patterns of contemporary community structure and relate them to the results of the phylogeographical analyses. We found evidence for late Pleistocene dispersal throughout the Bonneville Basin in most of the fish species studied, which would have homogenized ancient communities. However, modern communities show evidence of non-random community structure and dispersal limitation between major sub-basins and habitats. Together, these results suggest that the Bonneville Basin fish fauna assembled due to a combination of historical dispersal and contemporary habitat filtering and extinction dynamics following isolation. Further work should continue to combine different data types to achieve more accurate inferences regarding contemporary community assembly. [ABSTRACT FROM AUTHOR]

Aims To compare the species diversity and composition of indigenous yeast communities of hybrid grapes from conventionally and organically cultivated vineyards of an emerging cool-climate wine producing region. Methods and Results Illumina MiSeq sequences from L'Acadie blanc grape musts were processed and filtered to characterize indigenous yeast communities in organic and conventional vineyards of the Annapolis Valley wine region in Nova Scotia, Canada. While cultivation practice was not associated with yeast diversity or species richness, there was a strong effect on yeast community composition, with conventional vineyards characterized by higher proportions of Sporidiobolales and Filobasidium magnum , and organic vineyards supporting Filobasidium species other than F. magnum and higher proportions of Symmetrospora. There was also variation in yeast community composition among individual vineyards, and from year to year. Conclusions This is the first comprehensive assessment of yeasts associated with hybrid grapes grown using different cultivation practices in a North American cool climate wine region. Communities were dominated by basidiomycete yeasts and species composition of these yeasts differed significantly between vineyards employing organic and conventional cultivation practices. The role of basidiomycete yeasts in winemaking is not well understood, but some species may influence wine characteristics. [ABSTRACT FROM AUTHOR]

Microbial evolution within polymicrobial communities is a complex process. Here, we report within-species diversification within multispecies microbial communities during experimental evolution with the nematode Caenorhabditis elegans. We describe morphological diversity in the target species Chryseobacterium gleum , which developed a novel colony morphotype in a small number of replicate communities. Alternate morphotypes coexisted with original morphotypes in communities, as well as in single-species experiments using evolved isolates. We found that the original and alternate morphotypes differed in motility and in spatial expansion in the presence of C. elegans. This study provides insight into the emergence and maintenance of intraspecies diversity in the context of microbial communities. [ABSTRACT FROM AUTHOR]

Bryum is a moss genus that is widely distributed across the planet. Many of its species are characterized by large phenotypic and morphological plasticity, generating uncertainty in species identification exclusively based on morphological characteristics. In Antarctica, the extreme and harsh environmental conditions are further likely to promote intra-specific morphological variation, leading to complexity in the taxonomic attribution of Bryum species. In this study, we apply molecular phylogenetic analyses to assist in developing accurate species identification of B. pseudotriquetrum and two other relatively abundant Bryum species (B. archangelicum and B. pallescens) currently reported as Antarctic species. A total of 51 Bryum samples collected in Antarctica (22) and from all other continents (29) were sequenced for ITS nrDNA and rps 4 cpDNA regions, using markers widely used in moss phylogenetic studies. Phylogenetic trees were constructed including ITS (23) and rps 4 (34) sequences representing the three more frequent of the seven Bryum species currently reported from Antarctica as well as several other Bryum species and related genera, incorporating all sequence data available in the literature and accessible databases. The molecular analyses provide strong support for a match between morphological and molecular attribution of specimens identified as B. pseudotriquetrum. The data also provide evidence of currently unrecognized Bryum diversity in Antarctica, with the identification of one individual of B. uliginosum. However, the analyses suggest that all Antarctic specimens currently assigned to other Bryum species are morphological variants of B. pseudotriquetrum. The integration of molecular and morphological analyses supports the presence of B. pseudotriquetrum as the most widely distributed species of the genus in Antarctica and of B. uliginosum with a much more restricted distribution (South Sandwich Islands). Our data suggest that further investigation is required of B. archangelicum and B. pallescens in other continents globally, as the identity of none of the herbarium specimens examined in this study could be confirmed with molecular data. [ABSTRACT FROM AUTHOR]

Evolutionary stasis characterizes lineages that seldom speciate and show little phenotypic change over long stretches of geological time. Although lineages that appear to exhibit evolutionary stasis are often called living fossils, no single mechanism is thought to be responsible for their slow rates of morphological evolution and low species diversity. Some analyses of molecular evolutionary rates in a handful of living fossil lineages have indicated that these clades exhibit slow rates of genomic change. Here, we investigate mechanisms of evolutionary stasis using a dataset of 1,105 exons for 481 vertebrate species. We demonstrate that two ancient clades of ray-finned fishes classically called living fossils, gars and sturgeons, exhibit the lowest rates of molecular substitution in protein-coding genes among all jawed vertebrates. Comparably low rates of evolution are observed at fourfold degenerate sites in gars and sturgeons, implying a mechanism of stasis decoupled from selection that we speculate is linked to a highly effective DNA repair apparatus. We show that two gar species last sharing common ancestry over 100 million years ago produce morphologically intermediate and fertile hybrids in the wild. This makes gars the oldest naturally hybridizing divergence among eukaryotes and supports a theoretical prediction that slow rates of nucleotide substitution across the genome slow the accumulation of genetic incompatibilities, enabling hybridization across deeply divergent lineages and slowing the rate of speciation over geological timescales. Our results help establish molecular stasis as a barrier to speciation and phenotypic innovation and provide a mechanism to explain the low species diversity in living fossil lineages. [ABSTRACT FROM AUTHOR]